These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 543 fasta sequence [ACTAATACTAATAGAAGGATAAAAGAGCAACAAGAAACGAGAACGGAATAAAAACAGAAGGAAAAACTCACAACAGAGAAACACACTAGAGAAGAAAACAAAAATTAAGAACAACACACACGGTAGCAAAGCAAAGAGCGTGGAAGAGAGCTTGGATGGATTGGTTTTGTGCCTAAGGGAGGATTTTTTGTTGTAAAAGAGTTAGAAAGCTTTCGTTTTTACACTGTCAGTGCGTTCAAAATTGCATAACAAGAAAAGGATCTAGATATAGAAGCCATGACTCTAAGCAGACTTAAATAGAGTATAGAAAGAACAAACAGGAAGAAG--AAAAAAAACAAACCATGAACAGAAACAGTTAGAAGATTGTTCTATATCATTTTGATTTGATTTTGGTTGAAAATTACTTAAAAGCGTATTAAGTGAAAGAGGGAGATAGAGAGAGAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAAGAAATAGTAAAAGCGAAAGCATA] [+] EMBL BM607256 [ACTAATACTAATAGAAGGATAAAAGAGCAACAAGAAACGAGAACGGAATAAAAACAGAAGGAAAAACTCACAACAGAGAAACACACTAGAGAAGAAAACAAAAATTAAGAACAACACACACGGTAGCAAAGCAAAGAGCGTGGAAGAGAGCTTGGATGGATTGGTTTTGTGCCTAAGGGAGGATTTTTTGTTGTAAAAGAGTTAGAAAGCTTTCGTTTTTACACTGTCAGTGCGTTCAAAATTGCATAACAAGAAAAGGATCTAGATATAGAAGCCATGACTCTAAGCAGACTTAAATAGAGTATAGAAAGAACAAACAGGAAGAAG AAAAAAAACAAACCATGAACAGAAACAGTTAGAAGATTGTTCTATATCATTTTGATTTGATTTTGGTTGAAAATTACTTAAAAGCGTATTAAGTGAAAGAGGGAGATAGAGAGAGAGAGAGAGAGGTCTCCGAGTAAGACCACAG ] [+] EMBL BX620235 [ GGATAAAAGAGCAACAAGAAACGAGAACGGAATAAAAACAGAAGGAAAAACTCACAACAGAGAAACACACTAGAGAAGAAAACAAAAATTAAGAACAACACNCACGGNAGCAAAGCAAAGAGCGTGGAAGAGAACTTGAATGGATTGGTTCTGTGCCTAGGGGAGGATTTTTTGTTGTAAAAGAGTTAGAAAACATTCGTTTTTACACTGTCAGTGCGTTCAAAATTGCATAACAAGAAAAGGATCTAGATGTAGAAG CATGACTCTAAGCAGACTTAAATAGAGTATAGAAAGAACAAACAGGAAGAAGAAAAAAAAAACAAACCATGAACAGAAACAGTTAGAAGATAGTTCTATATCATTTTGATTTGATTTTGGTTGAAAATAACTTAAAAGCGTATTAAGTGAAAGGGAGAGAGAGAGCGATAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAAGAAATAGTAAAAGCGAAAGCATA] consensusID : consensus_3746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [TAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAGGGAGAGAGAGAGAGGAGATAAAAGATGAAAAAGAAAGAGCAAAGGCATAGCTAATAGTGTGAAGCAATCTTTTCACTTCTAAATTTTACCTTGTTATAAACAACATGCTGCGGGGCATGTGACCGGCCCCACAAAGCGAATGTGGTGAATGTGGCGTCAGAGGCAAACGCAAAGCGCAAAACTTTCGAAAAGCACTTAAACAATTCG] [+] EMBL BX618979 [TAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAGAAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAGGGAGAGAGAGAGAGGAGATAAAAGATGAAAAAGAAAGAGCAAAGGCATAGCTAATAGTGTGAAGCAATCTTTTCACTTCTAAATTTTACCTTGTTATAAACAACATGCTGCGGGGCATGTGACCGGCCCCACAAAGCGAATGTGGTGAATGTGGCGTCAGAGGCAAACGCAAAGCGCAAAACTTTCGAAAAGCACTTAAACAATTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3746#0 ACTAATACTAATAGAAGGATAAAAGAGCAACAAGAAACGAGAACGGAATAAAAACAGAAG 60 consensus_3746#1 --------------TAGAGAGAGAGGTCTCCGAGTAA-GACCACAGAAGAAGAAGAAAAA 45 ** * ** * * ** ** ** ** *** ** ** * ** consensus_3746#0 GAAAAACTCACAACAGAGAAACA-CACTAGAGAAGAAAACAAAAATTAAGAACAACACAC 119 consensus_3746#1 ACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAGGGAGAGAGAGAGAGGAGATAAAAGAT 105 * * * * * *** ** ***** * * * * * * * ** * * consensus_3746#0 ACGGTAGCAAAGCAAAGAGCGTGGAAGAGAGCTTGGATGGATTGGTTTTGTGCCTAAGGG 179 consensus_3746#1 GAAAAAGAAAGAGCAAAGGCATAGCTAATAGTGTGAA-GCAATCTTTTCACTTCTAAATT 164 ** ** ** ** * * * ** ** * * * * *** **** consensus_3746#0 AGGATTTTTTGTTGTAAAAGAGTTAGAAAGCTT----TCGTTTTTACACTGTCAGTGCGT 235 consensus_3746#1 TTACCTTGTTATAAACAACATGCTGCGGGGCATGTGACCGGCCCCACAAAGCGAATGTGG 224 ** ** * ** * * ** * ** *** * * ** * consensus_3746#0 TCAAAATTGCATAACAAGAAAAGGATCTAGATATAGAAGCCATGACTCTAAGCAGACTTA 295 consensus_3746#1 TGAATGTGGCGTCAGAGGCAAACG--CAAAGCGCAAAACTT-----TCGAAAAGCACTTA 277 * ** * ** * * * * *** * * * * ** ** ** ***** consensus_3746#0 AATAGAGTATAGAAAGAACAAACAGGAAGAAGAAAAAAAACAAACCATGAACAGAAACAG 355 consensus_3746#1 AACAATTCG--------------------------------------------------- 286 ** * consensus_3746#0 TTAGAAGATTGTTCTATATCATTTTGATTTGATTTTGGTTGAAAATTACTTAAAAGCGTA 415 consensus_3746#1 ------------------------------------------------------------ consensus_3746#0 TTAAGTGAAAGAGGGAGATAGAGAGAGAGAGAGAGAGGTCTCCGAGTAAGACCACAGAAG 475 consensus_3746#1 ------------------------------------------------------------ consensus_3746#0 AAGAAGAAAAAACAGGAACTAGTCTAAAAGCACAGCAAGAGAGAAGAAATAGTAAAAGCG 535 consensus_3746#1 ------------------------------------------------------------ consensus_3746#0 AAAGCATA 543 consensus_3746#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||