These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence [CCAGGGTTATGTCCTCACGATCAGCTAGCGAAGCATATTTTGTGGTAGAAACTCTAAACTCTATCTATTTGTATATTATATCCACAACGAAAAGATCCCCCCTCCTCATAGTGACTGCTCTTTGATCTAAAACACAAAAGTGTGTCTGACCACTTAAAATTCTGGTGTATCNATTGAATCGCGATCAGCAGTAACGATCGACTATGCTCGGTAGAATTTGTATGGGNAAACGTTCAGCGGAAGGTTTACGGGACGACGGTCGCGCGCGTTTCNAGTCTCTATATATGTANAAGGCGGGTTGGCCGCCAAGTCCCACGTGTTTGGGGGTCCGAGTCCTGGCAGTGCNTAGTGAAGGNCNGAGTGATAGAGGCCGATTGTGGCCATTTCATACCATATTCTGACNNCATTGTGGCTCAAAGGGACAATAAAAGGTTGAGGGTGCCAGATTTATTTGTCACTAACAGCACAGATNTGNACGCAGNGATGATCCGGAGGAACGGTAATTGAAGCGCATGTGCAACTAGTGCATCAAAGTTAAGATGGCAGAAGGAACAAGACTACCTCCCAATTGGGACAAGNGGCTCAATAAGCCATGGCATCCATTTCATACCAACCGTCCGGACCAGCAATTTCCCTTGGAATTGGTTACAACGTTTGGTTGGCTCCCTTGTGCTGGCACACTTGAGTGGCNGGTTGGGTTTGGTNAGCGTTGCAAGTTCAACACGGTTGGCGTTAACCCCGGGGAAAAACCGGCAAACGGGCGCGGCGAGGCAAGGTTTATGGGCAAGAAGGCATTCCCCACAGNGAACAGGCTGTACGGAAAGCNGGTTACCTGAACCCCAAACCACTTGGCTCTCACCCAGTCTTGGGAAACTTAGGGGAG] [+] EMBL AL693291 [CCAGGGTTATGTCCTCACGATCAGCTAGCGAAGCATATTTTGTGGTAGAAACTCTAAACTCTATCTATTTGTATATTATATCCACAACGAAAAGATCCCCCCTCCTCATAGTGACTGCTCTTTGATCTAAAACACAAAAGTGTGTCTGACCACTTAAAATTCTGGTGTATCNATTGAATCGCGATCAGCAGTAACGATCGACTATGCTCGGTAGAATTTGTATGGGNAAACGTTCAGCGGAAGGTTTACGGGACGACGGTCGCGCGCGTTTCNAGTCTCTATATATGTANAAGGCGGGTTGGCCGCCAAGTCCCACGTGTTTGGGGGTCCGAGTCCTGGCAGTGCNTAGTGAAGGNCNGAGTGATAGAGGCCGATTGTGGCCATTTCATACCATATTCTGACNNCATTGTGGCTCAAAGGGACAATAAAAGGTTGAGGGTGCCAGATTTATTTGTCACTAACAGCACAGATNTGNACGCAGNGATGATCCGGAGGAACGGTAATTGAAGCGCATGTGCAACTAGTGCATCAAAGTTAAGATGGCAGAAGGAACAAGACTACCTCCCAATTGGGACAAGNGGCTCAATAAGCCATGGCATCCATTTCATACCAACCGTCCGGACCAGCAATTTCCCTTGGAATTGGTTACAACGTTTGGTTGGCTCCCTTGTGCTGGCACACTTGAGTGGCNGGTTGGGTTTGGTNAGCGTTGCAAGTTCAACACGGTTGGCGTTAACCCCGGGGAAAAACCGGCAAACGGGCGCGGCGAGGCAAGGTTTATGGGCAAGAAGGCATTCCCCACAGNGAACAGGCTGTACGGAAAGCNGGTTACCTGAACCCCAAACCACTTGGCTCTCACCCAGTCTTGGGAAACTTAGGGGAG] consensusID : consensus_3752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [GCAGAATCGGCACGTAGGGTGGTGTCCCTCACGATCAGCCTAGGGAAGCATAGTTGTGGAGAAACTCTAAACTCTTCTATTTGTTATTATATCCACAACAAAAGATCCCCCCTCCTCATAGTGACGCTCTTTATCAAGAACACAAAAGTGGTCTGACCACTTTTTATTCGGTTTCATTGAACGCGATCGCGTAACGATCGCTTGCTGGTGAATTTTTGGCCAAACGTCAGCGAAGGTTAGGGACGACGCGCGCGCGTTCAGTCTTTATTGTTAAGCGGTGGCCGCCAGTCCAGTGTTGGGTCGGTCTGCGTGCTGGAGCGAGTGATGAGCGTTGTGCATTAAAAGTTTTGAACATTGGGCTCAAGGGCATAAGTGAGGGCCACTTTTGCACACGAGCACAGTTGAGCGGTGATCGGAGGAACGGTATTGAACCAGTGAATAGTGCATCAAGTTAAGATGGCAGAAGAAAAGACTACCCCAATGGCAGCGCTAAAGCAGCTCATGCNAGCGAGCTCCGGACAACATNNACCTGNATGTACAGTGTGCTCTGCAGACCCATGGGGCGTGGAGTACGGCATCACGTGCGTACCGGGAAGACGGAAAGGGGACCCGGCGGNAANGGTNTGGGGAAACAGGGCGANTTCCCAGGGAAAANGCCCTGGTATNCGGNAAACCGGTTCAGGAAAGCCGCGAAAGAGCCACTTGGGGTNTGCCCCNAGGNCT] [+] EMBL BX467525 [GCAGAATCGGCACGTAGGGTGGTGTCCCTCACGATCAGCCTAGGGAAGCATAGTTGTGGAGAAACTCTAAACTCTTCTATTTGTTATTATATCCACAACAAAAGATCCCCCCTCCTCATAGTGACGCTCTTTATCAAGAACACAAAAGTGGTCTGACCACTTTTTATTCGGTTTCATTGAACGCGATCGCGTAACGATCGCTTGCTGGTGAATTTTTGGCCAAACGTCAGCGAAGGTTAGGGACGACGCGCGCGCGTTCAGTCTTTATTGTTAAGCGGTGGCCGCCAGTCCAGTGTTGGGTCGGTCTGCGTGCTGGAGCGAGTGATGAGCGTTGTGCATTAAAAGTTTTGAACATTGGGCTCAAGGGCATAAGTGAGGGCCACTTTTGCACACGAGCACAGTTGAGCGGTGATCGGAGGAACGGTATTGAACCAGTGAATAGTGCATCAAGTTAAGATGGCAGAAGAAAAGACTACCCCAATGGCAGCGCTAAAGCAGCTCATGCNAGCGAGCTCCGGACAACATNNACCTGNATGTACAGTGTGCTCTGCAGACCCATGGGGCGTGGAGTACGGCATCACGTGCGTACCGGGAAGACGGAAAGGGGACCCGGCGGNAANGGTNTGGGGAAACAGGGCGANTTCCCAGGGAAAANGCCCTGGTATNCGGNAAACCGGTTCAGGAAAGCCGCGAAAGAGCCACTTGGGGTNTGCCCCNAGGNCT] consensusID : consensus_3752#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGTGTGGTGTCCCTCACGATCAGCTAGGGAAGCATAGTTGTGGAGAAACTCTAAACTCTTCTATTTGTTATTATATCCACAACAAAAGATCCCCCCTCCTCATAGTGACGCTCTTTATCAAAACACAAAAGTGGTCTGACCACTTTTTATTCGGTTTCATTGAACGCGATCGCGTAACGATCGCTTGATGGTGAATTTTTGGCAAACGTTAGCGAAGGTTAGGGACAACGCGCGCGCGATCAGTCTTTATTGTTAAACGGTGGCCGCCAGTCCAGTGTTGGGTCGGTCTGCGTGCTGGGGCGAGTGATGAGCGTTGTGCATTAAAATTTTGGACATTGGCTCAAGGCATAAGTGAGGGCCACTTTTGCACACACACAGTTGAGCGGTGATCGGAGGAACGGTATTAACCAGTGAATAGTGCATCAAGTTAAGATGGCAGAAGAAAAGACTACCCCAATGGCAGCGCTAAAGCAGACGCTCCTCTCGCTGTCCCGTGTCGCTGTCCTACTACTGGCATCGGGCTGGTGCGCGGCTACTCCCGCACCGGCCGTCCCCTCCATGCACGCCACCGGTGCCGGA] [+] EMBL BM638492 [CCGCCCACGCGTCCGCCCACGCGTCCGCGTGTGGTGTCCCTCACGATCAGCTAGGGAAGCATAGTTGTGGAGAAACTCTAAACTCTTCTATTTGTTATTATATCCACAACAAAAGATCCCCCCTCCTCATAGTGACGCTCTTTATCAAAACACAAAAGTGGTCTGACCACTTTTTATTCGGTTTCATTGAACGCGATCGCGTAACGATCGCTTGATGGTGAATTTTTGGCAAACGTTAGCGAAGGTTAGGGACAACGCGCGCGCGATCAGTCTTTATTGTTAAACGGTGGCCGCCAGTCCAGTGTTGGGTCGGTCTGCGTGCTGGGGCGAGTGATGAGCGTTGTGCATTAAAATTTTGGACATTGGCTCAAGGCATAAGTGAGGGCCACTTTTGCACACACACAGTTGAGCGGTGATCGGAGGAACGGTATTAACCAGTGAATAGTGCATCAAGTTAAGATGGCAGAAGAAAAGACTACCCCAATGGCAGCGCTAAAGCAGACGCTCCTCTCGCTGTCCCGTGTCGCTGTCCTACTACTGGCATCGGGCTGGTGCGCGGCTACTCCCGCACCGGCCGTCCCCTCCATGCACGCCACCGGTGCCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3752#1 --------GCAGA-ATCGGCACGTAGG---GTGGTGTCCCTCACGATCAGCCTAGGGAAG 48 consensus_3752#2 CCGCCCACGCGTCCGCCCACGCGTCCGCGTGTGGTGTCCCTCACGATCAGC-TAGGGAAG 59 consensus_3752#0 ----------------------CCAGG---GTTATGTCC-TCACGATCAGC-TAGCGAAG 33 * ** ***** *********** *** **** consensus_3752#1 CATAGTT-GTGG-AGAAACTCTAAACTCT-TCTATTTGT-TATTATATCCACAAC-AAAA 103 consensus_3752#2 CATAGTT-GTGG-AGAAACTCTAAACTCT-TCTATTTGT-TATTATATCCACAAC-AAAA 114 consensus_3752#0 CATATTTTGTGGTAGAAACTCTAAACTCTATCTATTTGTATATTATATCCACAACGAAAA 93 **** ** **** **************** ********* *************** **** consensus_3752#1 GATCCCCCCTCCTCATAGTGAC-GCTCTTT-ATCAAGAACACAAAAGTG-GTCTGACCAC 160 consensus_3752#2 GATCCCCCCTCCTCATAGTGAC-GCTCTTT-ATCAA-AACACAAAAGTG-GTCTGACCAC 170 consensus_3752#0 GATCCCCCCTCCTCATAGTGACTGCTCTTTGATCTAAAACACAAAAGTGTGTCTGACCAC 153 ********************** ******* *** * ************ ********** consensus_3752#1 TTTTTATTC-GGT---TTCATTGAA-CGCGATCGC--GTAACGATCGCTTGC---TGGTG 210 consensus_3752#2 TTTTTATTC-GGT---TTCATTGAA-CGCGATCGC--GTAACGATCGCTTGA---TGGTG 220 consensus_3752#0 TTAAAATTCTGGTGTATCNATTGAATCGCGATCAGCAGTAACGATCGACTATGCTCGGTA 213 ** **** *** * ****** ******* ********** * *** consensus_3752#1 AATTTT---TGGCCAAACGT-CAGCGAAGG--TTA-GGGACGACG--CGCGCGCGTT--C 259 consensus_3752#2 AATTTT---TGGC-AAACGT-TAGCGAAGG--TTA-GGGACAACG--CGCGCGCGAT--C 268 consensus_3752#0 GAATTTGTATGGGNAAACGTTCAGCGGAAGGTTTACGGGACGACGGTCGCGCGCGTTTCN 273 * *** *** ****** **** * * *** ***** *** ******** * consensus_3752#1 AGTCTTTAT-----TGTTAAGCGG--TGGCCGCCA-GTCCA--GTGTT---GGGTC--GG 304 consensus_3752#2 AGTCTTTAT-----TGTTAAACGG--TGGCCGCCA-GTCCA--GTGTT---GGGTC--GG 313 consensus_3752#0 AGTCTCTATATATGTANAAGGCGGGTTGGCCGCCAAGTCCCACGTGTTTGGGGGTCCGAG 333 ***** *** * * *** ********* **** ***** ***** * consensus_3752#1 TC-------TGCGTGCTGGAG---CGAGTGATGAGCG----TTGTG-------CATTAAA 343 consensus_3752#2 TC-------TGCGTGCTGGGG---CGAGTGATGAGCG----TTGTG-------CATTAAA 352 consensus_3752#0 TCCTGGCAGTGCNTAGTGAAGGNCNGAGTGATAGAGGCCGATTGTGGCCATTTCATACCA 393 ** *** * ** * ******* * ***** *** * consensus_3752#1 AGTTTTG--AACATTG-GGCTCAAGGGCATAA---------GTGAGGGCCACTTTTG--- 388 consensus_3752#2 A-TTTTG--GACATTG-G-CTCAAGG-CATAA---------GTGAGGGCCACTTTTG--- 394 consensus_3752#0 TATTCTGACNNCATTGTGGCTCAAAGGGACAATAAAAGGTTGAGGGTGCCAGATTTATTT 453 ** ** ***** * ***** * * ** * * * **** *** consensus_3752#1 --CAC-ACGAGCACAGTTG-------AGCGGTGATC-GGAGGAACGGTA-TTGAACCA-- 434 consensus_3752#2 --CAC-ACA--CACAGTTG-------AGCGGTGATC-GGAGGAACGGTA-TT-AACCA-- 437 consensus_3752#0 GTCACTAACAGCACAGATNTGNACGCAGNGATGATCCGGAGGAACGGTAATTGAAGCGCA 513 *** * ***** * ** * ***** ************ ** ** * consensus_3752#1 ---GTGAATAGTGCATCAA-GTTAAGATGGCAGAAGAAA--AGACTACC--CCAATGGC- 485 consensus_3752#2 ---GTGAATAGTGCATCAA-GTTAAGATGGCAGAAGAAA--AGACTACC--CCAATGGC- 488 consensus_3752#0 TGTGCAACTAGTGCATCAAAGTTAAGATGGCAGAAGGAACAAGACTACCTCCCAATTGGG 573 * * *********** **************** ** ******** ***** * consensus_3752#1 ---AGCGCTAAAGCAGCTCATGCNAGCGAGCTCCGGACAACATNNACCTGNATGTACAGT 542 consensus_3752#2 ---AGCGCTAAAGCAG---ACGCTC-----CTCT------CGCTGTCCCGTGT---CGCT 528 consensus_3752#0 ACAAGNGGCTCAATAAGCCATGGCATCCATTTCA---TACCAACCGTCCGGACCAGCAAT 630 ** * * * * * ** * * * * * consensus_3752#1 GTGCT-CTGCAG-ACCCATGGGGCGTGGAGTACGGCATCACGT--GCGTACCGGGAAGAC 598 consensus_3752#2 GTCCTACTACTG-GC--ATCGGGC-TGGTGCGCGGC--TACTC--CCGCACCGGCCGTCC 580 consensus_3752#0 TTCCCTTGGAATTGGTTACAACGTTTGGTTGGCTCCCTTGTGCTGGCACACTTGAGTGGC 690 * * * * *** * * * ** * * consensus_3752#1 GGAAAGGGGAC-CCGGCGGNAANGGTNTGGGGAAACAGGGCGANTTCCCAGGGAAAANGC 657 consensus_3752#2 CCTCCATGCACGCCACCGGTGCCGGA---------------------------------- 606 consensus_3752#0 NGGTTGGGTTTGGTNAGCGTTGCAAGTTCAACACGGTTGGCGTTAACCCCGGGGAAAAAC 750 * * consensus_3752#1 CCTGGTATNCGGNAAACCGGTTCAGGAAAGCCGCGAAAGAGCCACTTGGGGTNTGCCCCN 717 consensus_3752#2 ------------------------------------------------------------ consensus_3752#0 CGGCAAACGGGCGCGGCGAGGCAAGGTTTATGGGCAAGAAGGCATTCCCCACAGNGAACA 810 consensus_3752#1 AGGNCT------------------------------------------------------ 723 consensus_3752#2 ------------------------------------------------------------ consensus_3752#0 GGCTGTACGGAAAGCNGGTTACCTGAACCCCAAACCACTTGGCTCTCACCCAGTCTTGGG 870 consensus_3752#1 ------------- consensus_3752#2 ------------- consensus_3752#0 AAACTTAGGGGAG 883 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||