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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCATCGTCGGTCGCCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCAGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGT]
[+] EMBL BM607125 [CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCATCGTCGGTCGCCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCAGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGT]
consensusID : consensus_3754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[CCGCGGACGCGTGGGCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCGGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCGAGCGTGCG]
[+] EMBL BM626527 [CCGCGGACGCGTGGGCGAGCGCACAGGACGTACCAAGCGGCAGCAGCAGCAACCACAAGGCGCCACAAGCGTAGCGTTGATACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCCTGCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATTGTTGATGTTTTTATTTTGTTATATATTTGTGTGTGTGTGTGTGTGCGAGAGGATAACTCATCGAAAGTGAATTAAAACGACAACAACAAAAAAACCCTTCAGCGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACAAGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGTGTGTGCATTCGGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCGAGCGTGCG]
consensusID : consensus_3754#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[TACGGCACGAGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCGCCACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTGTGTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACAACAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCACGAAACCCGGGGNATTGGACAGGCCTTTCACAAAGCACCACGGGNCCATTGGAAGGGTGCCACCAAGAACNGGTGCCATTGGCCAACTATGGTGCCACCGCGANTA]
[+] EMBL BX619837 [TACGGCACGAGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCGCCACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCCACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGCAGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCACCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACTTTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTGGATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTGTGTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACAACAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCACGAAACCCGGGGNATTGGACAGGCCTTTCACAAAGCACCACGGGNCCATTGGAAGGGTGCCACCAAGAACNGGTGCCATTGGCCAACTATGGTGCCACCGCGANTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3754#0 CCGCGGCGACCCTACAGCATAACTCCGGCACGAGCTCGGGCACGGTACGCGCCAGTGCAT 60
consensus_3754#1 --------------------------------------------------------CCGC 4
consensus_3754#2 ----------------------------------------------------------TA 2
consensus_3754#0 CGTCG-GTCGCCGAGCGCACAGGACGTACCA-AGCGGCAGCAGCAGCAACCACAAGGCGC 118
consensus_3754#1 GGACGCGTGGGCGAGCGCACAGGACGTACCA-AGCGGCAGCAGCAGCAACCACAAGGCGC 63
consensus_3754#2 CGGCACG-AGGCGAGTGCACAGGACGTACCAGAGCGGCAGCAGCAGCAACCACAAGGCGC 61
* * * * **** *************** ****************************
consensus_3754#0 CACA-AGCGTAGCGTTGAT-ACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCC 176
consensus_3754#1 CACA-AGCGTAGCGTTGAT-ACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCC 121
consensus_3754#2 CACGGAGCGTAGCGTTGATTACAGCTCGATACGCACGATACAAGCCTTTGCGCGAGAGCC 121
*** ************** ****************************************
consensus_3754#0 ACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGC 236
consensus_3754#1 ACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGC 181
consensus_3754#2 ACAAGCTAAAGACGCGAGCGCGTACGCGAACGGCATGGTGCATCCTTCTGCCATCCGAGC 181
************************************************************
consensus_3754#0 AGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCA 296
consensus_3754#1 AGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCA 241
consensus_3754#2 AGGCCCCCGTGAAGGACAGATTGATCGTAAATCACACACGAAACACGGTGCGGTTTTCCA 241
************************************************************
consensus_3754#0 CCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACT 356
consensus_3754#1 CCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACT 301
consensus_3754#2 CCTATTGCCTGCTTTGATTTAAAAACAAACCAAAAAAACACACACAAGCGGCATTTGACT 301
************************************************************
consensus_3754#0 TTTCCAAGCTGTGAATCAGCTGTTCCTG--CCTGTGCATTCCTTCCTGTTTCGCGAGTGG 414
consensus_3754#1 TTTCCAAGCTGTGAATCAGCTGTTCCTG--CCTGTGCATTCCTTCCTGTTTCGCGAGTGG 359
consensus_3754#2 TTTCCAAGCTGTGAATCAGCTGTTCNTNGNCCTGTGCATTCCTTCCTGTTTCGCGAGTGG 361
************************* * ******************************
consensus_3754#0 ATCGTGTGACTGATGGTGTGAGGTGATTGTTGTGATGTTTTTATTTTGTTATATATTTGT 474
consensus_3754#1 ATCGTGTGACTGATGGTGTGAGGTGATTGTTG--ATGTTTTTATTTTGTTATATATTTGT 417
consensus_3754#2 ATCGTGTGACTGATGGTGTGAGGTGATNGTTGTGATGTTTTTATTTTGTNATATATNTGT 421
*************************** **** *************** ****** ***
consensus_3754#0 GTGTG-TGTG-TGTGTGCGAGAGG-ATAACTCATC-GAAAGTGAATTAAAACGACAACAA 530
consensus_3754#1 GTGTG-TGTG-TGTGTGCGAGAGG-ATAACTCATC-GAAAGTGAATTAAAACGACAACAA 473
consensus_3754#2 GTGTNGTGTNGTGTGTGCGAGAGGGATAACNCATCCGAAAGTGAATTAAAACGACAACAA 481
**** *** ************* ***** **** ************************
consensus_3754#0 CAAAAAAA---CCCTTCAG--CGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACA 585
consensus_3754#1 CAAAAAAA---CCCTTCAG--CGGCTCCCTTTCCCACGAACCGGGATTGACAGCTTCACA 528
consensus_3754#2 CAAAAAAAACCCCTTTCAAGCCGGCTCCCNTTNCCCCA---CGAAACCCGGGGNATTG-- 536
******** ** **** ******** ** ** * ** * * *
consensus_3754#0 AGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGT 645
consensus_3754#1 AGACACGGGCATTGAGGTGCACAAGACGGTGCATTGCAACTATGTGCACCGCGACTAGGT 588
consensus_3754#2 -GACAGGCCTTTCACAAAGCACCACG-GGNCCATTGGAAGGGTGC-CACCAAGAACNGGT 593
**** * * **** * ** ***** ** ** **** ** ***
consensus_3754#0 GTGTGCATTCAGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGT--------------- 690
consensus_3754#1 GTGTGCATTCGGCGGCGGCGGCGGCGGCGGCGACCCGTCAGCTGTGCTGATCTGCGTGCG 648
consensus_3754#2 GC---CATTGGCCAACTATGGTGCCACCG-CGANTA------------------------ 625
* **** * * ** * * ** ***
consensus_3754#0 --------
consensus_3754#1 AGCGTGCG 656
consensus_3754#2 --------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||