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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 868 fasta sequence
[GAATCCCCGAGTTATGAGGAGGTATTCAGGAGGAAATCCTTAACGACACCACCATCACCAACACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCACCTCGCTCGATGAGGATGACTGGAGCTACACGCTCAACCCGATCACGCCCCAGAAGCTGGAGGAGCTGAATGCGGCCCGGCCCGTGCGGATGAAGAACCCGAGCGGCTCGCGCAAGCGCCCGAAACCGGCGGAAGAGAAACAGGACAAGAAGGAGCGGAAAAACCAATACTCCACCACCACCTGCTACATCTGTGATACGCACCACGAGTCGATCGCGCAGCGGGACGACCACTTCCGCAACCACATCCACATGCTGCCGTACGAGTGCACGGAGTGTTTGGCCGATCCGCCCCCGGAGGACGCCGATTCGCCGCGGAAGGACCAGCCAGCAACGGAACATCCCACCCACATCGTGCTGCGCAGCGTCATCCAGCTGAACAGCCACATGATGATGCACGGTTTCCGCACAAGTGTGAGCACTGCTACCGGCGCTTCACCGACCGTGTATCTGCTGAAACCAACACCTGTTGGAACTANCACCAGGCAATCGAAGGAGGGTCTGACCGTGCCGAGTGGTGCGGCAAGCGGGTACTANTCCCGGCGCCCGGTTCCCAGACACCGTGNGGCGCCACAAGCACTCCGTCACGGAACGGTCAAGTTGCACGAGTCGGCTGCTTCGNTTCCGAAGCNTTTGCCCCCGAGATGTNCCACGGCNACCAGCACAATGCNCTATTCCGCTTTACCNCGGANGCTCACANTGGGTCACGCAGGCCAGTCGANTCGATAAAANTCNGAA]
[+] EMBL AL932804 [GAATCCCCGAGTTATGAGGAGGTATTCAGGAGGAAATCCTTAACGACACCACCATCACCAACACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCACCTCGCTCGATGAGGATGACTGGAGCTACACGCTCAACCCGATCACGCCCCAGAAGCTGGAGGAGCTGAATGCGGCCCGGCCCGTGCGGATGAAGAACCCGAGCGGCTCGCGCAAGCGCCCGAAACCGGCGGAAGAGAAACAGGACAAGAAGGAGCGGAAAAACCAATACTCCACCACCACCTGCTACATCTGTGATACGCACCACGAGTCGATCGCGCAGCGGGACGACCACTTCCGCAACCACATCCACATGCTGCCGTACGAGTGCACGGAGTGTTTGGCCGATCCGCCCCCGGAGGACGCCGATTCGCCGCGGAAGGACCAGCCAGCAACGGAACATCCCACCCACATCGTGCTGCGCAGCGTCATCCAGCTGAACAGCCACATGATGATGCACGGTTTCCGCACAAGTGTGAGCACTGCTACCGGCGCTTCACCGACCGTGTATCTGCTGAAACCAACACCTGTTGGAACTANCACCAGGCAATCGAAGGAGGGTCTGACCGTGCCGAGTGGTGCGGCAAGCGGGTACTANTCCCGGCGCCCGGTTCCCAGACACCGTGNGGCGCCACAAGCACTCCGTCACGGAACGGTCAAGTTGCACGAGTCGGCTGCTTCGNTTCCGAAGCNTTTGCCCCCGAGATGTNCCACGGCNACCAGCACAATGCNCTATTCCGCTTTACCNCGGANGCTCACANTGGGTCACGCAGGCCAGTCGANTCGATAAAANTCNGAA]
consensusID : consensus_3760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence
[AAGAATTGCCCTGAGGTTACACGTGCCGCTNGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCCACCTCGCTCGATGAGTGATGACTGGAGCTACACGCTCAACCCGATCACGCCCCAGAAGCTGGAGTGAGCTGAATGCGTGCCCTGGCCCTGTGCTGTGATGAATGAACCCTGAGCTGGCTCGCTGCAATGCTGCCCGAAACCTGGCTGGAATGAGAAACATGGACAATGAAGTGAGCTGGAAAAACCAATACTCCACCACCACTGTCTACATCTGTGATACGCACCACGAGTCGATCTGCTGCAGACTGNGGACTGACGCACATTACCTGACAAAGACANCGATCCCAACGATTGCTTGCTCNGGTAACGAAGATTGCACGNGAGATTGTTTTGGGACCGAGTCCCGGCCCCCCCTGGTGAAGGAACGCCCGACTTCCGCCCCGGCTGGAAAGTGACCCAAGGCCAGGCAAAACTGGGAAAACCAATTCCCCCAAANCGCAACAACTTTCGGGGTNGACCATTGCGGCCAGAGGAAGGGTTTCAAATACCCCAAGGCGTTTGANAATCATGGGCGCACCNAATTGCATCTGAATTTGCCACANGNGCGACTATATTACTCCTGNCNAACAAAGTTTNAGNTNGAATGCNCAACACTGGCGTAACCCCAGGGGTCGGGCCATTTCAACACCGAAAACCCGGGGTGNGTATATTCCTATNCTA]
[+] EMBL AL693462 [AAGAATTGCCCTGAGGTTACACGTGCCGCTNGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCCACCTCGCTCGATGAGTGATGACTGGAGCTACACGCTCAACCCGATCACGCCCCAGAAGCTGGAGTGAGCTGAATGCGTGCCCTGGCCCTGTGCTGTGATGAATGAACCCTGAGCTGGCTCGCTGCAATGCTGCCCGAAACCTGGCTGGAATGAGAAACATGGACAATGAAGTGAGCTGGAAAAACCAATACTCCACCACCACTGTCTACATCTGTGATACGCACCACGAGTCGATCTGCTGCAGACTGNGGACTGACGCACATTACCTGACAAAGACANCGATCCCAACGATTGCTTGCTCNGGTAACGAAGATTGCACGNGAGATTGTTTTGGGACCGAGTCCCGGCCCCCCCTGGTGAAGGAACGCCCGACTTCCGCCCCGGCTGGAAAGTGACCCAAGGCCAGGCAAAACTGGGAAAACCAATTCCCCCAAANCGCAACAACTTTCGGGGTNGACCATTGCGGCCAGAGGAAGGGTTTCAAATACCCCAAGGCGTTTGANAATCATGGGCGCACCNAATTGCATCTGAATTTGCCACANGNGCGACTATATTACTCCTGNCNAACAAAGTTTNAGNTNGAATGCNCAACACTGGCGTAACCCCAGGGGTCGGGCCATTTCAACACCGAAAACCCGGGGTGNGTATATTCCTATNCTA]
consensusID : consensus_3760#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence
[CCGCAGCAATCGATTCTCAACATGTCTGCGGAATGTTCTGACGCGTCCACCGACCCGCGGCTGCTGCAGTATCGGGACCTGTTTTGTCGAATATGCCTTCAGTACAGCAAAGGGGCGCTGATCCCGATTGGGGCGGAGATAAAGAAAACCACCCTGCTGGACATGTTTATACAGCTCACCACTTTTGAGCTGGATCACAATGACGCGTTTCCAAGGTTCATGTGCGAGCAGTGCGTCAGCAAGCTGACGCTGGCGTACAGCATCCGGGAGGAGTTCATCTCGCAGACCGATCTGCTGCTGAAGCTGGTGGTGCAGAAGCAAATCATTAAGTACTACGAGCAATTTCCGCTGGAACCGAAGGTTCAGGCACCGCCCAAGGTAATACAGCCGAGCGTCCATGCCCCGTTCCGGGAGCTAAAGCCCACCCGGGTGGCGAAGCCAACCGGCGGAGTGCCGGTGGTAAAACCGCAGCAGATGTTAATTCAGGAAAGCATCAAAGATGAAACGGTAGAGGAATTGGATGTAGATGAGGAGGTAATTCAGGAGGAAATCCTTAACGACACCACCACCACCACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCCACCTCGCTCGATG]
[+] EMBL BM586997 [CCGCAGCAATCGATTCTCAACATGTCTGCGGAATGTTCTGACGCGTCCACCGACCCGCGGCTGCTGCAGTATCGGGACCTGTTTTGTCGAATATGCCTTCAGTACAGCAAAGGGGCGCTGATCCCGATTGGGGCGGAGATAAAGAAAACCACCCTGCTGGACATGTTTATACAGCTCACCACTTTTGAGCTGGATCACAATGACGCGTTTCCAAGGTTCATGTGCGAGCAGTGCGTCAGCAAGCTGACGCTGGCGTACAGCATCCGGGAGGAGTTCATCTCGCAGACCGATCTGCTGCTGAAGCTGGTGGTGCAGAAGCAAATCATTAAGTACTACGAGCAATTTCCGCTGGAACCGAAGGTTCAGGCACCGCCCAAGGTAATACAGCCGAGCGTCCATGCCCCGTTCCGGGAGCTAAAGCCCACCCGGGTGGCGAAGCCAACCGGCGGAGTGCCGGTGGTAAAACCGCAGCAGATGTTAATTCAGGAAAGCATCAAAGATGAAACGGTAGAGGAATTGGATGTAGATGAGGAGGTAATTCAGGAGGAAATCCTTAACGACACCACCACCACCACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTGGGATTCGTCCAGCACGGCCACCTCGCTCGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3760#0 GAATCCCCGAGTTATGAGGAGGTATTCAGGAGGAAATCCTTAACGACACCACCATCACCA 60
consensus_3760#1 -----------------------------------------AAGAATTGCCCTGAGGTTA 19
consensus_3760#2 ------------------------------------------------------------
consensus_3760#0 ACACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTG-GGATTCG 119
consensus_3760#1 -CAC-GTGCCGCTNGACGAGTCCAGTCTCGCGGTTGATTTCAAAGACGACTG-GGATTCG 76
consensus_3760#2 ------------------------CCGCAGCAATCGATTCTCAACATGTCTGCGGAATGT 36
** * **** ** * * *** *** *
consensus_3760#0 TCCAGCACGGC-ACCTCGCTCGATGAG-GATG-ACTGGAGCTACACGCTCAACCCGATCA 176
consensus_3760#1 TCCAGCACGGCCACCTCGCTCGATGAGTGATG-ACTGGAGCTACACGCTCAACCCGATCA 135
consensus_3760#2 TCTGACGCGTCCAC--CGACCCGCGGCTGCTGCAGTATCGGGACCTGTTTTGTC-GAATA 93
** * ** * ** ** * * * ** * * * ** * * * ** *
consensus_3760#0 CGCCCCAGAAGCTGGAG-GAGCTGAATGCG-GCCCGGCCCGTGCG----GATGAA-GAAC 229
consensus_3760#1 CGCCCCAGAAGCTGGAGTGAGCTGAATGCGTGCCCTGGCCCTGTGCTGTGATGAATGAAC 195
consensus_3760#2 TGCCTTCAGTACAGCAAAGGGGCG---CTGATCCCGATTGGGGCG--GAGATAAAGAAAA 148
*** * * * * * * * *** * * *** ** **
consensus_3760#0 CC-GAGC-GGCTCGC-GCAAG--CGCCCGAAACC--GGCGGAA--GAGAAACA-GGACAA 279
consensus_3760#1 CCTGAGCTGGCTCGCTGCAATGCTGCCCGAAACCT-GGCTGGAATGAGAAACATGGACAA 254
consensus_3760#2 CC--ACCCTGCTGGACATGTTTATACAGCTCACCACTTTTGAGCTGGATCACAATGACGC 206
** * * *** * * *** * * *** ***
consensus_3760#0 -GAAG-GAGC-GGAAAAACCAATACTCCACCACCA--CCTGCTACATC-TGTGATACGCA 333
consensus_3760#1 TGAAGTGAGCTGGAAAAACCAATACTCCACCACCA--CTGTCTACATC-TGTGATACGCA 311
consensus_3760#2 GTTTCCAAGGTTCATGTGCGAGCAGTGCGTCAGCAAGCTGACGCTGGCGTACAGCATCCG 266
** * * * * * * ** ** * * * * * *
consensus_3760#0 CCACGAGTCGATCGCGCAG-CGGGACGACCACTTCCGCAACCACATCCACATGCTGCCGT 392
consensus_3760#1 CCACGAGTCGATC-TGCTG-CAGACTGNGGACTGACGCA--CATTACCTGACAAAGACAN 367
consensus_3760#2 GGAGGAGTTCATCTCGCAGACCGATCTGCTGCTGAAGCTGGTGGTGCAGAAGCAAATCAT 326
* **** *** ** * * * ** ** * * *
consensus_3760#0 ACGAGTGCACGGAGTGTTTGGCCGATCCGCCCCCGGAGGACGCCGATTCGCCGCGGAAGG 452
consensus_3760#1 -CGATCCCAACGATTGCTTG-----------CTCNGGTAACGAAGATTGCACGNG---AG 412
consensus_3760#2 -TAAGTACTACGAGCAATTT----------CCGCTGGAACCGAAGGTTCAGGCACCGCCC 375
* * ** ** * * * ** * **
consensus_3760#0 ACCAGCCAGCAACGGAACATCCCACCCACATCGTGCTGCGCAGCGTCATCCAGCTGAAC- 511
consensus_3760#1 ATTGTTTTGGGACCGA--GTCCCGGCCCCCCCTGGTGAAGGAACGCCCGACTTCCGCCCC 470
consensus_3760#2 AAGGTAATACAGCCGAGCGTCCATGCCCCGTTCCGGGAGCTAAAGCC---CACCCGGGT- 431
* * ** *** ** * * * * * * * *
consensus_3760#0 AGCCACATGATGATGCACGGTTTCCGCACAAGTGTGAGCACTGCTACCGGCGCTTCACCG 571
consensus_3760#1 GGCTGGAAAGTGACCCAAGGCCAG-GCAAAACTGGGAAAACCAATTCC-------CCCAA 522
consensus_3760#2 GGC--GAAGCCAACCGGCGGA----GTGCCGGTGGTAAAACCG------------CAGCA 473
** * * ** * ** * ** *
consensus_3760#0 ACCGTGTATCTGCTGAAACCAACACCTGTTGGAACTANCACCAGGCAATCGAAGGAGGGT 631
consensus_3760#1 ANCG---------------CAACAACTTTCGGGGTNGACCATTGCGGCCAGAGGAAGGGT 567
consensus_3760#2 GATGT-----------------TAATTCAGGAAAGCATCAAAGATGAAACGGTAGAGGAA 516
* * * * * * ***
consensus_3760#0 CT-GACCGTGCCGAGTGGTGCGGCAAGC--GGGTACTANTCCCGGCGCCCGGTTCCCAGA 688
consensus_3760#1 TTCAAATACCCCAAGGCGTTTGANAATCATGGGCGCACCNAATTGCATCTGAATTTGCCA 627
consensus_3760#2 TT-GGATGT---AGATGAGGAGGTAATTCAGGAGGAAATCCTTAACGACACCACCACCAC 572
* * ** ** * *
consensus_3760#0 CACCGTGNGGCGCCACAAGCACTCCGTCACGGAACGGTCAAGTTGCACGAGTCGGCTGCT 748
consensus_3760#1 CAN-GNGCGAC--TATATTACTCCTGNCNAACAAAGTTTNAGNT---NGAATGCNCAACA 681
consensus_3760#2 CACCGTGCCGCTGGACGAGTCCAGTCTCGCGGTTGATTTCAAAG--ACGACTGGGATTCG 630
** * * * * * * * ** * *
consensus_3760#0 TCGNTTCCGAAGCNTTTGCCCCCGAGATGTNCCACGGCNACCAGCACAATGCNC-TATTC 807
consensus_3760#1 CTGG---CGTAACCCCAGGGGTCGGGCCATTTCAACACCGAAAACCCGGGGTGNGTATAT 738
consensus_3760#2 TCCAG--CACGGCCACCTCGCTCGATG--------------------------------- 655
* * **
consensus_3760#0 CGCTTTACCNCGGANGCTCACANTGGGTCACGCAGGCCAGTCGANTCGATAAAANTCNGA 867
consensus_3760#1 TCCTATNCTA-------------------------------------------------- 748
consensus_3760#2 ------------------------------------------------------------
consensus_3760#0 A 868
consensus_3760#1 -
consensus_3760#2 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||