These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3768#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAACATTGTGGAGTCTTCGCACTACCAAAAGATCG] [+] EMBL BM638713 [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAACATTGTGGAGTCTTCGCACTACCAAAAGATCG] consensusID : consensus_3768#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGA] [+] EMBL BM655706 [CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGA] consensusID : consensus_3768#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTAGTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC] [+] EMBL BM606379 [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTAGTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3768#0 CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGT-- 58 consensus_3768#1 --------CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTAC 52 consensus_3768#2 CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTAC 60 ************************************************ consensus_3768#0 ----------------------------------------------GAATCATTATTGCG 72 consensus_3768#1 CGCGGGTTCGACGACTGGCCAATCCGCAGAGGT-------------GAATCATTATTGCG 99 consensus_3768#2 CGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCG 120 ************** consensus_3768#0 GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTA 132 consensus_3768#1 GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTA 159 consensus_3768#2 GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTA 180 ************************************* ********************** consensus_3768#0 GTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTG 192 consensus_3768#1 GTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTG 219 consensus_3768#2 GTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTG 240 ******** **************************** ********************** consensus_3768#0 AAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAG 252 consensus_3768#1 AAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAG 279 consensus_3768#2 AAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAG 300 ****************************** ***************************** consensus_3768#0 CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG 312 consensus_3768#1 CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG 339 consensus_3768#2 CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG 360 ************************************************************ consensus_3768#0 TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG 372 consensus_3768#1 TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG 399 consensus_3768#2 TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG 420 ************************************************************ consensus_3768#0 CAGTAGTAGCAGCA---ACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC 429 consensus_3768#1 CAGTAGTAGCAGCA---ACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC 456 consensus_3768#2 CAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC 480 *** ** ** **** ******************************************* consensus_3768#0 TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA 489 consensus_3768#1 TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA 516 consensus_3768#2 TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA 540 ************************************************************ consensus_3768#0 TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGG-AAGGA 548 consensus_3768#1 TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGG-AAGGA 575 consensus_3768#2 TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGA 600 ************************************************* **** ***** consensus_3768#0 CGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATG 608 consensus_3768#1 CGATGGA---CGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATG 632 consensus_3768#2 CGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC------------------- 641 ******* ******************************* consensus_3768#0 GATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAACATTGTGGA 668 consensus_3768#1 GATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGA----------------------- 669 consensus_3768#2 ------------------------------------------------------------ consensus_3768#0 GTCTTCGCACTACCAAAAGATCG 691 consensus_3768#1 ----------------------- consensus_3768#2 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||