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Anopheles gambiae
cluster # 3768 cluster # 3768       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3768#0 length = 691 sequences # 1  
consensus_3768#1 length = 669 sequences # 1  
consensus_3768#2 length = 641 sequences # 1  

consensusID : consensus_3768#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence
                              [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAACATTGTGGAGTCTTCGCACTACCAAAAGATCG]

[+] EMBL BM638713             [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAACATTGTGGAGTCTTCGCACTACCAAAAGATCG]


>consensus_3768#0 CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTGA ATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAG TGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGT GGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCA AAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGAT ACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAG TAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTG CCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGG AACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGG AGGAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCG ACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAAC ATTGTGGAGTCTTCGCACTACCAAAAGATCG



consensusID : consensus_3768#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence
                              [CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGA]

[+] EMBL BM655706             [CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGA]


>consensus_3768#1 CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTT CGACGACTGGCCAATCCGCAGAGGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTT TGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTAGTTGCACCTCGTTGCCTTTGT GCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTA ACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAA GGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTA CTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGTAGTAGCAGCAACGATGT CATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCC CGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGAC AGACGTACCATCCGCAGTTCCTGTCGGAGGAAGGACGATGGACGGATCTGAGCATCAAGG TGCCCGGCTCGACCTGTCTCCGCGACAAGATGGATCTGCTGGACTACTGCAAGAAGGTGT ACCCGGGGA



consensusID : consensus_3768#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence
                              [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTAGTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC]

[+] EMBL BM606379             [CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTACCGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCGGTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTAGTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTGAAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAGCTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAGTTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAGCAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCCTGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGATTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGACGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC]


>consensus_3768#2 CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTAC CGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCG GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTA GTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTG AAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAG CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG CAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGA CGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3768#0      CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGT-- 58
consensus_3768#1      --------CCGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTAC 52
consensus_3768#2      CCGGCCGTAAGCAGTCACATCGGAAATTGCTTCCGTTCCAGTGGTTCTCAGTGCAGGTAC 60
                                ************************************************  

consensus_3768#0      ----------------------------------------------GAATCATTATTGCG 72
consensus_3768#1      CGCGGGTTCGACGACTGGCCAATCCGCAGAGGT-------------GAATCATTATTGCG 99
consensus_3768#2      CGCGGGTTCGACGACTGGCCAATCCGCAGAGGTGTGCAAGCTGTGTGAATCATTATTGCG 120
                                                                    **************

consensus_3768#0      GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTA 132
consensus_3768#1      GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTTCCAGTGTGAGTGTCGTGCATTA 159
consensus_3768#2      GTGAGTGTTCAGTTTAGTCTTTGCACCCGAGTGCCGTCCCAGTGTGAGTGTCGTGCATTA 180
                      ************************************* **********************

consensus_3768#0      GTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTG 192
consensus_3768#1      GTTGCACCTCGTTGCCTTTGTGCAGCGCTACGTTGTGGACATTATAGTGGTACTAAGGTG 219
consensus_3768#2      GTTGCACCCCGTTGCCTTTGTGCAGCGCTACGTTGTGAACATTATAGTGGTACTAAGGTG 240
                      ******** **************************** **********************

consensus_3768#0      AAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAG 252
consensus_3768#1      AAAGAAACGAAAGAGTGTGTAACGAAAAAAGAAAACCAAATCAAACCAAAAACGAACGAG 279
consensus_3768#2      AAAGAAACGAAAGAGTGTGTAACGAAAAAATAAAACCAAATCAAACCAAAAACGAACGAG 300
                      ****************************** *****************************

consensus_3768#0      CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG 312
consensus_3768#1      CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG 339
consensus_3768#2      CTCCGAAGTAGAGCTACGGAAGGATACAGTGTGTTGTATACAGGTGATACAACCTGGTAG 360
                      ************************************************************

consensus_3768#0      TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG 372
consensus_3768#1      TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG 399
consensus_3768#2      TTTGAAAGTGTGTCGCAGTTACTGCCGTTTCAGCGTCCATTAACATAGTAGCAGCAGCAG 420
                      ************************************************************

consensus_3768#0      CAGTAGTAGCAGCA---ACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC 429
consensus_3768#1      CAGTAGTAGCAGCA---ACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC 456
consensus_3768#2      CAGCAGCAGTAGCAGCTACGATGTCATCCTCAGTGTGGCCAGTGGCGTTTGCCCTTGTCC 480
                      *** ** ** ****   *******************************************

consensus_3768#0      TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA 489
consensus_3768#1      TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA 516
consensus_3768#2      TGGTGACACTTTATTCCACGGTCCCGTCTCAGGCTGCCTCACCACGATGGGAACCACAGA 540
                      ************************************************************

consensus_3768#0      TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGG-AAGGA 548
consensus_3768#1      TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCGGAGG-AAGGA 575
consensus_3768#2      TTTCGGTGCTGTGCGAAGCCGGACAGACGTACCATCCGCAGTTCCTGTCCGAGGCAAGGA 600
                      ************************************************* **** *****

consensus_3768#0      CGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATG 608
consensus_3768#1      CGATGGA---CGGATCTGAGCATCAAGGTGCCCGGCTCGACCTGTCTCCGCGACAAGATG 632
consensus_3768#2      CGATGGACCACGGATCTGAGCATCAAGGTGCCCGGCTCGAC------------------- 641
                      *******   *******************************                   

consensus_3768#0      GATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGACGAGATATTACGAACATTGTGGA 668
consensus_3768#1      GATCTGCTGGACTACTGCAAGAAGGTGTACCCGGGGA----------------------- 669
consensus_3768#2      ------------------------------------------------------------
                                                                                  

consensus_3768#0      GTCTTCGCACTACCAAAAGATCG 691
consensus_3768#1      -----------------------
consensus_3768#2      -----------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)