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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 914 fasta sequence
[GTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAANAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCAACAAACTTCTTAGCATTCTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANCNAGTAGTACGCAAGTAACATTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTCGATACCGTAACAACNCACNCAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANACTGCNNCTACATCTCACTATCCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCGCCCTNTGAAAAAGCCCCGNCGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCTTCCAAACTTGGCCCGAGCAACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNGGCCCCATTGGGACACACNCACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCANACAGGCCNCCCGGCACCACAACACACANCAAAACACAACCAANNACAGCANCACACNAAACGCANAACNCACAANCACCCCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCAACACTGNGGANAAC]
[+] EMBL AL693825 [GTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAANAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCAACAAACTTCTTAGCATTCTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANCNAGTAGTACGCAAGTAACATTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTCGATACCGTAACAACNCACNCAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANACTGCNNCTACATCTCACTATCCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCGCCCTNTGAAAAAGCCCCGNCGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCTTCCAAACTTGGCCCGAGCAACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNGGCCCCATTGGGACACACNCACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCANACAGGCCNCCCGGCACCACAACACACANCAAAACACAACCAANNACAGCANCACACNAAACGCANAACNCACAANCACCCCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCAACACTGNGGANAAC]
consensusID : consensus_3781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence
[TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTTTTGTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTCTAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCGCTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTATCTAATGCATAATTATATCGCCGCGATGTACATATTCACTGTTTTGCTGTTTTGCGGTTTTGTTTTTCAGCTTATTTATGCGGATGTTCAGTAGTAGGATTTGCTGTTTTGCTTCCGG]
[+] EMBL BX624975 [TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTTTTGTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTCTAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCGCTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTATCTAATGCATAATTATATCGCCGCGATGTACATATTCACTG ]
[-] EMBL BX613668 [ ATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTTTTGTTATTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTCTAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCGCTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTATCTAATGCATAATTATATCGCCGCGATGTACATATTCACTGTTTTGCTGTTTTGCGGTTTTGTTTTTCAGCTTATTTATGCGGATGTTCAGTAGTAGGATTTGCTGTTTTGCTTCCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3781#0 -----------------------------------------GTGTTTGTGTGTTCTTGTG 19
consensus_3781#1 TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTG 60
*******************
consensus_3781#0 TTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATAT 79
consensus_3781#1 TTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATAT 120
************************************************************
consensus_3781#0 GTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAA 139
consensus_3781#1 GTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAA 180
************************************************************
consensus_3781#0 GTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAANAAAAAACTAGTAAAAAAC 199
consensus_3781#1 GTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAAC 240
***************************************** ******************
consensus_3781#0 ACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCCTAGAATTGCGGTGCGCGAT 259
consensus_3781#1 ACTTATGCGCACGCAAATTTGTTTT-GTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGAT 299
********************** ** *******************************
consensus_3781#0 ATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCAACAAACTTCTTAGCATT 319
consensus_3781#1 ATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATT 359
******************************************* ****************
consensus_3781#0 CTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACA 379
consensus_3781#1 CTAACCATTTTTTTA--TGAGCGATCGTCGAAAACATAAACACAACCACACACACACACA 417
********** * * *******************************************
consensus_3781#0 CACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANCNAGTAGTACGCAAGTAACA 439
consensus_3781#1 CACATAGACACTCTCGCTCTCGG--ATCGTCCTTTT----TTAGTGTCGTTTAAATTA-- 469
*********************** ***** * * * *** ** * *
consensus_3781#0 TTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTCGATACCGTAACAACNCACN 499
consensus_3781#1 -----AATGT-GGATCGCTTCATGACGGTTGCGATCG-GTCGAT--CGTAAAAAAAAACT 520
***** ************************** ****** ***** ** **
consensus_3781#0 CAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANACTGCNNCTACATCTCACTAT 559
consensus_3781#1 AA---TGCTTAGCTCATACTTATCTAATGCA-TAATTATATCGCCGCGATGTACA--TAT 574
* * * * ** * ** * * ** ** * ** * * * ***
consensus_3781#0 CCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCGCCCTNTGAAAAAGCCCCGN 619
consensus_3781#1 TCACTGTTTTGCTGT---TTTGCGGTTTTGTTTTTCAGCTTATTTATGCGGATGTTCAGT 631
* * * *** * * * ** * * * * ** * * * *
consensus_3781#0 CGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCTTCCAAACTTGGCCCGAGCA 679
consensus_3781#1 AGTAGGATT-TGCTGTTTTGCTTCCGG--------------------------------- 657
* * * * * * **
consensus_3781#0 ACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNGGCCCCATTGGGACACACNC 739
consensus_3781#1 ------------------------------------------------------------
consensus_3781#0 ACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCANACAGGCCNCCCGGCACCAC 799
consensus_3781#1 ------------------------------------------------------------
consensus_3781#0 AACACACANCAAAACACAACCAANNACAGCANCACACNAAACGCANAACNCACAANCACC 859
consensus_3781#1 ------------------------------------------------------------
consensus_3781#0 CCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCAACACTGNGGANAAC 914
consensus_3781#1 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||