These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 914 fasta sequence [GTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAANAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCAACAAACTTCTTAGCATTCTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANCNAGTAGTACGCAAGTAACATTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTCGATACCGTAACAACNCACNCAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANACTGCNNCTACATCTCACTATCCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCGCCCTNTGAAAAAGCCCCGNCGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCTTCCAAACTTGGCCCGAGCAACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNGGCCCCATTGGGACACACNCACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCANACAGGCCNCCCGGCACCACAACACACANCAAAACACAACCAANNACAGCANCACACNAAACGCANAACNCACAANCACCCCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCAACACTGNGGANAAC] [+] EMBL AL693825 [GTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAANAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCAACAAACTTCTTAGCATTCTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANCNAGTAGTACGCAAGTAACATTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTCGATACCGTAACAACNCACNCAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANACTGCNNCTACATCTCACTATCCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCGCCCTNTGAAAAAGCCCCGNCGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCTTCCAAACTTGGCCCGAGCAACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNGGCCCCATTGGGACACACNCACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCANACAGGCCNCCCGGCACCACAACACACANCAAAACACAACCAANNACAGCANCACACNAAACGCANAACNCACAANCACCCCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCAACACTGNGGANAAC] consensusID : consensus_3781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 657 fasta sequence [TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTTTTGTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTCTAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCGCTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTATCTAATGCATAATTATATCGCCGCGATGTACATATTCACTGTTTTGCTGTTTTGCGGTTTTGTTTTTCAGCTTATTTATGCGGATGTTCAGTAGTAGGATTTGCTGTTTTGCTTCCGG] [+] EMBL BX624975 [TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTTTTGTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTCTAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCGCTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTATCTAATGCATAATTATATCGCCGCGATGTACATATTCACTG ] [-] EMBL BX613668 [ ATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTTTTGTTATTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTCTAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCGCTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTATCTAATGCATAATTATATCGCCGCGATGTACATATTCACTGTTTTGCTGTTTTGCGGTTTTGTTTTTCAGCTTATTTATGCGGATGTTCAGTAGTAGGATTTGCTGTTTTGCTTCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3781#0 -----------------------------------------GTGTTTGTGTGTTCTTGTG 19 consensus_3781#1 TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTG 60 ******************* consensus_3781#0 TTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATAT 79 consensus_3781#1 TTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATAT 120 ************************************************************ consensus_3781#0 GTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAA 139 consensus_3781#1 GTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAA 180 ************************************************************ consensus_3781#0 GTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAANAAAAAACTAGTAAAAAAC 199 consensus_3781#1 GTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAAC 240 ***************************************** ****************** consensus_3781#0 ACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCCTAGAATTGCGGTGCGCGAT 259 consensus_3781#1 ACTTATGCGCACGCAAATTTGTTTT-GTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGAT 299 ********************** ** ******************************* consensus_3781#0 ATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCAACAAACTTCTTAGCATT 319 consensus_3781#1 ATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATT 359 ******************************************* **************** consensus_3781#0 CTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACA 379 consensus_3781#1 CTAACCATTTTTTTA--TGAGCGATCGTCGAAAACATAAACACAACCACACACACACACA 417 ********** * * ******************************************* consensus_3781#0 CACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANCNAGTAGTACGCAAGTAACA 439 consensus_3781#1 CACATAGACACTCTCGCTCTCGG--ATCGTCCTTTT----TTAGTGTCGTTTAAATTA-- 469 *********************** ***** * * * *** ** * * consensus_3781#0 TTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTCGATACCGTAACAACNCACN 499 consensus_3781#1 -----AATGT-GGATCGCTTCATGACGGTTGCGATCG-GTCGAT--CGTAAAAAAAAACT 520 ***** ************************** ****** ***** ** ** consensus_3781#0 CAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANACTGCNNCTACATCTCACTAT 559 consensus_3781#1 AA---TGCTTAGCTCATACTTATCTAATGCA-TAATTATATCGCCGCGATGTACA--TAT 574 * * * * ** * ** * * ** ** * ** * * * *** consensus_3781#0 CCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCGCCCTNTGAAAAAGCCCCGN 619 consensus_3781#1 TCACTGTTTTGCTGT---TTTGCGGTTTTGTTTTTCAGCTTATTTATGCGGATGTTCAGT 631 * * * *** * * * ** * * * * ** * * * * consensus_3781#0 CGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCTTCCAAACTTGGCCCGAGCA 679 consensus_3781#1 AGTAGGATT-TGCTGTTTTGCTTCCGG--------------------------------- 657 * * * * * * ** consensus_3781#0 ACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNGGCCCCATTGGGACACACNC 739 consensus_3781#1 ------------------------------------------------------------ consensus_3781#0 ACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCANACAGGCCNCCCGGCACCAC 799 consensus_3781#1 ------------------------------------------------------------ consensus_3781#0 AACACACANCAAAACACAACCAANNACAGCANCACACNAAACGCANAACNCACAANCACC 859 consensus_3781#1 ------------------------------------------------------------ consensus_3781#0 CCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCAACACTGNGGANAAC 914 consensus_3781#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||