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Anopheles gambiae
cluster # 3781 cluster # 3781       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3781#0 length = 914 sequences # 1  
consensus_3781#1 length = 657 sequences # 2  

consensusID : consensus_3781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 914
fasta sequence
                              [GTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAANAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCAACAAACTTCTTAGCATTCTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANCNAGTAGTACGCAAGTAACATTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTCGATACCGTAACAACNCACNCAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANACTGCNNCTACATCTCACTATCCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCGCCCTNTGAAAAAGCCCCGNCGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCTTCCAAACTTGGCCCGAGCAACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNGGCCCCATTGGGACACACNCACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCANACAGGCCNCCCGGCACCACAACACACANCAAAACACAACCAANNACAGCANCACACNAAACGCANAACNCACAANCACCCCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCAACACTGNGGANAAC]

[+] EMBL AL693825             [GTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAANAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCAACAAACTTCTTAGCATTCTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANCNAGTAGTACGCAAGTAACATTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTCGATACCGTAACAACNCACNCAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANACTGCNNCTACATCTCACTATCCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCGCCCTNTGAAAAAGCCCCGNCGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCTTCCAAACTTGGCCCGAGCAACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNGGCCCCATTGGGACACACNCACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCANACAGGCCNCCCGGCACCACAACACACANCAAAACACAACCAANNACAGCANCACACNAAACGCANAACNCACAANCACCCCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCAACACTGNGGANAAC]


>consensus_3781#0 GTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAA CATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGG GTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAA NAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCC TAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCAC CAACAAACTTCTTAGCATTCTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAAC ACAACCACACACACACACACACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANC NAGTAGTACGCAAGTAACATTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTC GATACCGTAACAACNCACNCAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANAC TGCNNCTACATCTCACTATCCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCG CCCTNTGAAAAAGCCCCGNCGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCT TCCAAACTTGGCCCGAGCAACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNG GCCCCATTGGGACACACNCACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCAN ACAGGCCNCCCGGCACCACAACACACANCAAAACACAACCAANNACAGCANCACACNAAA CGCANAACNCACAANCACCCCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCA ACACTGNGGANAAC



consensusID : consensus_3781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 657
fasta sequence
                              [TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTTTTGTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTCTAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCGCTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTATCTAATGCATAATTATATCGCCGCGATGTACATATTCACTGTTTTGCTGTTTTGCGGTTTTGTTTTTCAGCTTATTTATGCGGATGTTCAGTAGTAGGATTTGCTGTTTTGCTTCCGG]

[+] EMBL BX624975             [TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTGTTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATATGTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTTTTGTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTCTAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCGCTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTATCTAATGCATAATTATATCGCCGCGATGTACATATTCACTG                                                                             ]
[-] EMBL BX613668             [                                                                                                                                               ATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAAGTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAACACTTATGCGCACGCAAATTTGTTTTGTTATTTGCCTGTCCTAGAATTGCGGTGCGCGATATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTCTAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACACATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCGCTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTATCTAATGCATAATTATATCGCCGCGATGTACATATTCACTGTTTTGCTGTTTTGCGGTTTTGTTTTTCAGCTTATTTATGCGGATGTTCAGTAGTAGGATTTGCTGTTTTGCTTCCGG]


>consensus_3781#1 TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTG TTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATAT GTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAA GTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAAC ACTTATGCGCACGCAAATTTGTTTTGTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGATA TTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATTC TAACCATTTTTTTATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACACAC ATAGACACTCTCGCTCTCGGATCGTCCTTTTTTAGTGTCGTTTAAATTAAATGTGGATCG CTTCATGACGGTTGCGATCGGTCGATCGTAAAAAAAAACTAATGCTTAGCTCATACTTAT CTAATGCATAATTATATCGCCGCGATGTACATATTCACTGTTTTGCTGTTTTGCGGTTTT GTTTTTCAGCTTATTTATGCGGATGTTCAGTAGTAGGATTTGCTGTTTTGCTTCCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3781#0      -----------------------------------------GTGTTTGTGTGTTCTTGTG 19
consensus_3781#1      TCTATCTTTCCTATTTTATCGCAATAGACTTCAGCTTTCGTGTGTTTGTGTGTTCTTGTG 60
                                                               *******************

consensus_3781#0      TTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATAT 79
consensus_3781#1      TTGTGTGTGCTTGGTTTTATAGTTGTGTTTTTCGTGCCTAACATGCTACCGGATGCATAT 120
                      ************************************************************

consensus_3781#0      GTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAA 139
consensus_3781#1      GTGTTATGCCTATTTAATAATTTATTTCCATCGCAAACGGGGTCGGACGATTATCCGAAA 180
                      ************************************************************

consensus_3781#0      GTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAANAAAAAACTAGTAAAAAAC 199
consensus_3781#1      GTTCGAAATGATTTTCATAAACACGCACACACTTTGGATAAAAAAAAACTAGTAAAAAAC 240
                      ***************************************** ******************

consensus_3781#0      ACTTATGCGCACGCAAATTTGTCCCCGTCGTTTGCCTGTCCTAGAATTGCGGTGCGCGAT 259
consensus_3781#1      ACTTATGCGCACGCAAATTTGTTTT-GTTGTTTGCCTGTCCTAGAATTGCGGTGCGCGAT 299
                      **********************    ** *******************************

consensus_3781#0      ATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCAACAAACTTCTTAGCATT 319
consensus_3781#1      ATTCACGACCGTCTGTGCTTAAGGATTTTCTCTTATTGCACCACCAAACTTCTTAGCATT 359
                      ******************************************* ****************

consensus_3781#0      CTAACCATTTCTCTNCATGAGCGATCGTCGAAAACATAAACACAACCACACACACACACA 379
consensus_3781#1      CTAACCATTTTTTTA--TGAGCGATCGTCGAAAACATAAACACAACCACACACACACACA 417
                      ********** * *   *******************************************

consensus_3781#0      CACATAGACACTCTCGCTCTCGGGCATCGTACCTATAAANCNAGTAGTACGCAAGTAACA 439
consensus_3781#1      CACATAGACACTCTCGCTCTCGG--ATCGTCCTTTT----TTAGTGTCGTTTAAATTA-- 469
                      ***********************  ***** * * *      ***       ** * *  

consensus_3781#0      TTCACAATGTAGGATCGCTTCATGACGGTTGCGATCGAGTCGATACCGTAACAACNCACN 499
consensus_3781#1      -----AATGT-GGATCGCTTCATGACGGTTGCGATCG-GTCGAT--CGTAAAAAAAAACT 520
                           ***** ************************** ******  ***** **   ** 

consensus_3781#0      CAACCTACNTGCCTTAGCCTCAATAACCTCAACTCCTANACTGCNNCTACATCTCACTAT 559
consensus_3781#1      AA---TGCTTAGCTCATACTTATCTAATGCA-TAATTATATCGCCGCGATGTACA--TAT 574
                       *   * * *  ** *  ** *   *   **     ** *  **  * *  *     ***

consensus_3781#0      CCGCCGGACGAATGTACATATTCACCTTGGCCNCCCNNCCGCCCTNTGAAAAAGCCCCGN 619
consensus_3781#1      TCACTGTTTTGCTGT---TTTGCGGTTTTGTTTTTCAGCTTATTTATGCGGATGTTCAGT 631
                       * * *      ***   * * *   ** *     *  *     * **   * *  * * 

consensus_3781#0      CGCATCACCACGGCTCCCTACNCCCAACGCCCCTCTAACCTTCCAAACTTGGCCCGAGCA 679
consensus_3781#1      AGTAGGATT-TGCTGTTTTGCTTCCGG--------------------------------- 657
                       * *  *    *      * *  **                                   

consensus_3781#0      ACTTTGCATAACCAAGCCTACGCCTNACGCGAATTCAGCNGGCCCCATTGGGACACACNC 739
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      ACNGAAGGCCCANNNAACCCCCCAGCGAGCCGCCCACNCANACAGGCCNCCCGGCACCAC 799
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      AACACACANCAAAACACAACCAANNACAGCANCACACNAAACGCANAACNCACAANCACC 859
consensus_3781#1      ------------------------------------------------------------
                                                                                  

consensus_3781#0      CCAACCATCCGCCCGCGCACCCCTTGNGCCACNACACANCAACACTGNGGANAAC 914
consensus_3781#1      -------------------------------------------------------
                                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)