These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 488 fasta sequence [CCG-GTTTGGATTTGGCGTCTTAATCTTCGCGTTGTGAAATAAACACAAGATCATCTCAAACAACATCAAAATGGCAAAACTTATGGTAGTTGCCCTGGCCCTTGCGCTGTGCGTCGTGCTTGTTAGTGCTTCTGGCGATGAGTGTCCACTCGCGTCCAAAGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAAGGC] [+] EMBL BM605582 [CCG GTTTGGATTTGGCGTCTTAATCTTCGCGTTGTGAAATAAACACAAGATCATCTCAAACAACATCAAAATGGCAAAACTTATGGTAGTTGCCCTGGCCCTTGCGCTGTGCGTCGTGCTTGTTAGTGCTTCTGGCGATGAGTGTCCACTCGCGTCCAAAGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAAGGC] [+] EMBL BM637891 [CCGCGTTTGGATTTGGCGTCTTAATCTTCGCGTTGTGAAATAAACACAAGATCATCTCAAACAACATCAAAATGGCAAAACTTATGGTAGTTGCCCTGGCCCTTGCGCTGTGCGTCGTGCTTGTGAGTGCTTCTGGCGATGAGTGTCCACTCGCGTCCAAAGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAATGAAATGATTAGCTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTG ] consensusID : consensus_3782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [CCGCCCACGCGTCCGGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTTTGACGAGATTGACCGTTTAGGGGCAGATTACTAAAAATATCACACTGTCTATTGATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAAGGCATTT] [+] EMBL BM623541 [CCGCCCACGCGTCCGGTTGGCTCCTGCTCACCGACCTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAATCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTTTGACGAGATTGACCGTTTAGGGGCAGATTACTAAAAATATCACACTGTCTATTGATGGTTCCAACTCCGGTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATCCATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGGAGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAAGGCATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3782#0 CCGGTTTGGATTTGGCGTCTTAATCTTCGCGTTGTGAAATAAACACAAGATCATCTCAAA 60 consensus_3782#1 ------------------------------------------------------------ consensus_3782#0 CAACATCAAAATGGCAAAACTTATGGTAGTTGCCCTGGCCCTTGCGCTGTGCGTCGTGCT 120 consensus_3782#1 ------------------------------------------------------------ consensus_3782#0 TGTTAGTGCTTCTGGCGATGAGTGTCCACTCGCGTCCAAAGTTGGCTCCTGCTCACCGAC 180 consensus_3782#1 -------------------------CCGCCCACGCGTCCGGTTGGCTCCTGCTCACCGAC 35 ** * * ** ******************** consensus_3782#0 CTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAA 240 consensus_3782#1 CTGCCTGACCGATCGGGACTGTGCCGACATCGGTGGCAAGTGCTGCTCCAACGCCTGCAA 95 ************************************************************ consensus_3782#0 TCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGT---------- 290 consensus_3782#1 TCGCAAATCCTGCGTCGAGCGAAGCAAACTGAAGCAGGGCAGCAACAAGTTTGACGAGAT 155 ************************************************** consensus_3782#0 ---------------------------------------------ATGGTTCCAACTCCG 305 consensus_3782#1 TGACCGTTTAGGGGCAGATTACTAAAAATATCACACTGTCTATTGATGGTTCCAACTCCG 215 *************** consensus_3782#0 GTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATC 365 consensus_3782#1 GTTCGGGCTCGTACTGTGGCAGCACCAAGTGCAACTCGTTCGAGAAGTGTGGCGTCGATC 275 ************************************************************ consensus_3782#0 CATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGG 425 consensus_3782#1 CATCCTCCAAGAAGCCGAAGTGTGTCCGTGCGTAATGGAAGCGAGAAGCTCGGGGTCGGG 335 ************************************************************ consensus_3782#0 AGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAA 485 consensus_3782#1 AGTGAAATGATTAGTTTATAACAAACAAAATTGTTCTTAAATAAACTATTAAATTTTGAA 395 ************************************************************ consensus_3782#0 GGC---- 488 consensus_3782#1 GGCATTT 402 *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||