These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3785#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 727 fasta sequence [AGGTTAAACATGGAGCTCATACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTATNCGTACGAAAGCGANGATACTAGTAGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTACGAAGTGCGCCACGTGTACTACACGCCGAACGCGCGCACGTACCGACGGGNAACTACAGCGGCAAACCATATACTGCATACACGTACCGAGANACTTGCTACGAGTGTATGTGGGAAGGATTTCGGGTACCATTACTATTACAATCGGCACATGCTGACGGTGCACAACATTAAGACGAATGCAGCGGGTCAAGATACCCGNANAGTGGGCACNGCTTGGCTAGCAGCACAAGATATANTACGGCGCAANNTAGCTGCTACCNTACGAGCGAGGATACGTGAAATNGGTGTTGTAGTAGTNGTAGTTCCGTGTANGTACCCCACATACNNCCAGGGAATATATTNGGCAGGTAATAATAAGGCCAGNTACCACAGGCTTATANGGTNGTAAACNTNGGACTAGGCCCTNGGGGCGACCTTAAGNAAGCATAGGACGCGGATTGTGGACACAGCCANGNGGCTTACCTTAGGTATGATGGGTACACCCCGGGGTTGGGCACCATTNAACNGGGAAAAACGGGTTGGGNAACGGAAAAACCGGTTNNTCCTANTAGCCTCCCTATATCAATCAGANAAAAACACACCAATACTNTANGCN] [+] EMBL AL693932 [AGGTTAAACATGGAGCTCATACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTATNCGTACGAAAGCGANGATACTAGTAGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTACGAAGTGCGCCACGTGTACTACACGCCGAACGCGCGCACGTACCGACGGGNAACTACAGCGGCAAACCATATACTGCATACACGTACCGAGANACTTGCTACGAGTGTATGTGGGAAGGATTTCGGGTACCATTACTATTACAATCGGCACATGCTGACGGTGCACAACATTAAGACGAATGCAGCGGGTCAAGATACCCGNANAGTGGGCACNGCTTGGCTAGCAGCACAAGATATANTACGGCGCAANNTAGCTGCTACCNTACGAGCGAGGATACGTGAAATNGGTGTTGTAGTAGTNGTAGTTCCGTGTANGTACCCCACATACNNCCAGGGAATATATTNGGCAGGTAATAATAAGGCCAGNTACCACAGGCTTATANGGTNGTAAACNTNGGACTAGGCCCTNGGGGCGACCTTAAGNAAGCATAGGACGCGGATTGTGGACACAGCCANGNGGCTTACCTTAGGTATGATGGGTACACCCCGGGGTTGGGCACCATTNAACNGGGAAAAACGGGTTGGGNAACGGAAAAACCGGTTNNTCCTANTAGCCTCCCTATATCAATCAGANAAAAACACACCAATACTNTANGCN] consensusID : consensus_3785#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 721 fasta sequence [GATNGCCGAGCATTCACGCAGCGATATGAAAAGTATACCACCGGTGCAATGGCGAATGTGCGCGAATGTAGCGGAAGGCTCCTCGATACCCGCTACACTTTGCGTCGCTCGCCGGGCTAGATCTCGGCAAGCGGTTAGGCCAGCCGGATATGTACTTCAAAAACCCTTACAACACGGAAAGCGACGAAGATGGATCACCGGAGGCGG-CAACGGGATGCATCTGGCTGCGGCGGCGGCAGCGG-AG-AGAGGCTGCGG-TGGATCCGTCACTGGTGGCGGGGCGGCCCAAAAAACCAAACAACCTCGAAAACGGCAAAGTACCGGCAAGCGCAAGCCAAAGCTTCCGAAGGAGGAGTCACCGGCCGAGCTGGCGCTGCGCAAGTTCCCCTGTCCGGAGTGTCCCCTGTCGTTCAAGACGGGGTACCACCTGAAGCGCCACCATGCGACGATCCATCAGGACCAGCGGTTCCCCTGCACGGTGTGCCACACGTCGTACGGGCGGCGCGAGAAGCTTCGTGCGCACATGGAGCTCATACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTTTCGTACGAAAGCGAGGATCTGCTGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTCGAGTGCGCCACGTGTCTCACGCCGAACGCGCGCACGTCCGACGGGAACTACAGCGGCAACCATATCTGCATCACGTACCAGAAC] [+] EMBL AL931175 [GATNGCCGAGCATTCACGCAGCGATATGAAAAGTATACCACCGGTGCAATGGCGAATGTGCGCGAATGTAGCGGAAGGCTCCTCGATACCCGCTACACTTTGCGTCGCTCGCCGGGCTAGATCTCGGCAAGCGGTTAGGCCAGCCGGATATGTACTTCAAAAACCCTTACAACACGGAAAGCGACGAAGATGGATCACCGGAGGCGG CAACGGGATGCATCTGGCTGCGGCGGCGGCAGCGG AG AGAGGCTGCGG TGGATCCGTCA ] [+] EMBL BM645825 [ ccggccgcCGAATGTAGCGGAAGGCTCCTCGATA CCGCTACACTTTGCGTCGCTCGCCGGGCTAGATCTCGGCAAGCGGTTAGGCC GCCGGATATGTACTTCAAAAACCCTTACAACACGGAAAGCGACGAAGATGGATCACCGGAGGCGGCCAACGGGATGCATCTGGCTGCGGCGGCGGCAGCGGCAGCAGCAGCTGCGGCTGCATCCGTCACTGGTGGCGGGGCGGCCCAAAAAACCAAACAACCTCGAAAACGGCAAAGTACCGGCAAGCGCAAGCCAAAGCTTCCGAAGGAGGAGTCACCGGCCGAGCTGGCGCTGCGCAAGTTCCCCTGTCCGGAGTGTCCCCTGTCGTTCAAGACGGGGTACCACCTGAAGCGCCACCATGCGACGATCCATCAGGACCAGCGGTTCCCCTGCACGGTGTGCCACACGTCGTACGGGCGGCGCGAGAAGCTTCGTGCGCACATGGAGCTCATACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTTTCGTACGAAAGCGAGGATCTGCTGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTCGAGTGCGCCACGTGTCTCACGCCGAACGCGCGCACGTCCGACGGGAACTACAGCGGCAACCATATCTGCATCACGTACCAGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3785#0 AGGTTAAACATGGAGCTCATACACAA-GAT-TCAAAGCTACTTCGTGTGCGAAATCTGTC 58 consensus_3785#1 -----GATNGCCGAGCATTCACGCAGCGATATGAAAAGTATACCACCGGTGCAATGGCGA 55 * **** ** ** *** * *** ** * * * *** consensus_3785#0 TGGTATNCGTACGAAAGCGANGATACT--AGTAGCAGCGACACGT-GTACCGCCACGAGC 115 consensus_3785#1 ATGTGCGCGAATGTAGCGGAAGGCTCCTCGATACCCGCTACACTTTGCGTCGCTCGCCGG 115 ** ** * * * ** * * ** * ** **** * * *** * consensus_3785#0 ACCCGAAGCCGCTACGAAGT-GCGCCACGTGTAC-TACACGCCGAACGCGCGCACGTACC 173 consensus_3785#1 GCTAGATCTCGGCAAGCGGTTAGGCCAGCCGGATATGTACTTCAAAAACCCTTACAACAC 175 * ** ** * * ** **** * * * ** * ** * * ** * consensus_3785#0 GACGGGNAACTACAGCGGCAAACCATATACTGCATACACGTACCGAGANACTTGCTACGA 233 consensus_3785#1 GGAAAGCGACGAAGATGGATCACCGGAGGCGGCAACGGGATGC--ATCTGGCTGCGGCGG 233 * * ** * ** *** * * *** * * * *** ** consensus_3785#0 GTGTATGTGGGAAGGATTTCGGGTACCATTACTATTACAATCGGCACATGCTGACGGTGC 293 consensus_3785#1 CGGCA-GCGGAGAGAGGCTGCGGTGGATCCGTCACTGGTGGCGGGGCGGCCCAAAAAACC 292 * * * ** ** * *** * * *** * * * * consensus_3785#0 ACAACATTAAGACGAATGCAGCGGGTCAAGATACCCGNANAGTGGGCACNGCTTGGCTAG 353 consensus_3785#1 AAACAACCTCGAAAACGGCAAAGTACCGGCAAGCGCAAGCCAAAGCTTCCGAAGGAGGAG 352 * * * ** * *** * * * * * * * * * ** consensus_3785#0 -CAGCACAAGATATANTACGGCGCAANNTAGCTGCTACCNTACGAGCGAGGATACGTGAA 412 consensus_3785#1 TCACCGGCCGAGCTGGCGCTGCGCAAGTTCCCCTGTCCGGAGTGTCCCCTGTCGTTCAAG 412 ** * ** * * ****** * * * * * * * * consensus_3785#0 ATNGGTGTTGTAGTAGTNGTAGTTCCGTGTANGTACCCCACAT-ACNNCCAGGGAATATA 471 consensus_3785#1 ACGGG-GTACCACCTGAAGCGCCACCATGCGACGATCCATCAGGACCAGCGGTTCCCCTG 471 * ** ** * * * ** ** * ** ** ** * * * consensus_3785#0 TTNGGCAGGTAATA----ATAAGGCCAGNTACCACAGGCTTATANGGTNGTAAACNTNGG 527 consensus_3785#1 CACGGTGTGCCACACGTCGTACGGGCGGCGCGAGAAGCTTCGTGCGCACATGGAGCTCAT 531 ** * * * ** ** * * ** * * * * * * consensus_3785#0 ACTAGGCCCTNGGGGCGACCTTAAGNAAGCATAGGACGCGGATTGTGGACACAGCCANGN 587 consensus_3785#1 ACACAAGATTCAAAGCTACTTCGTGTGCGAAATCTGTCTGGTTTC---GTACGAAAGCGA 588 ** * ** ** * * * * ** ** ** * consensus_3785#0 GGCTTACCTTAGGTATGATGGGTAC-ACCCCGGG-GTTGGGCACCATTNAACNGGGAAAA 645 consensus_3785#1 GGATCTGCTGCAGCGACACGTGTACCGCCACGAGCACCCGAAGCCGCTCGAGTGCGCCA- 647 ** * ** * * * **** ** ** * * ** * * * * * consensus_3785#0 ACGGGTTGGGNAACGGAAAAACCGGTTNNTCCTANTAGCCTCCCTATATCAATCAGANA- 704 consensus_3785#1 -CGTGTCTCACGCCG--AACGCGCGCACGTCCGACGGGAACTACAGCGGCAACCATATCT 704 ** ** ** ** * * *** * * * *** ** * consensus_3785#0 --AAAACACACCAATACTNTANGCN 727 consensus_3785#1 GCATCACGTACCAGAAC-------- 721 * ** **** ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||