These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 942 fasta sequence [CCGGCAAAAGCAAAAGTTTTTGATCGTTTTTGGGCATCGTGACGCATAGAAACAATCCTTACCAAAAAAAAACCCCCCCGGGTTCTGATCGTTCCCCATTCTCCGATCTTCCTCCCTTCCAAACAGTGCGTGTGTGTTTGTGTCTTGCGTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGCTGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTTGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCTGACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCATGATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCCGAACTACTCCTACTCCTCCTACTCCGCGAATGGTGGCCGGCAGGACGGTGTCGGTGCGCCCAGCAGCGCTGCCAACAGTAGTGCACCGAACATAACCACCACCGCCGGCGCATCCAGCAACGGCGGGGCCAGCATAGGCGGTGGAGAAGGGCCCGGCGGCATGTCTTCGCCCACGCACACCCGGTTCGGGCGCGACTTTCACCACTCCGATCATGAAGGTATTTCATTTGCCGGCATGACGGACACAAGCGACGACATTCCCGGCATCGGGCAGTATGAGGATTTTCACACAATCGACTGGCAGCGGGACATTGCCCGGGATCGTATGCGCCATCGGTACATAGTGAAAAAGCGGCAGGACTCGTTCTGGGATCTTTTAAAGGGTGCACACGATG] [+] EMBL BM582331 [CCGGCAAAAGCAAAAGTTTTTGATCGTTTTTGGGCATCGTGACGCATAGAAACAATCCTTACCAAAAAAAAACCCCCCCGGGTTCTGATCGTTCCCCATTCTCCGATCTTCCTCCCTTCCAAACAGTGCGTGTGTGTTTGTGTCTTGCGTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGCTGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTTGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCAC ] [+] EMBL BM628905 [ ccgGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTTGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCTGACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCATGATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCCGAACTACTCCTACTCCTCCTACTCCGCGAATGGTGGCCGGCAGGACGGTGTCGGTGCGCCCAGCAGCGCTGCCAACAGTAGTGCACCGAACATAACCACCACCGCCGGCGCATCCAGCAACGGCGGGGCCAGCATAGGCGGTGGAGAAGGGCCCGGCGGCATGTCTTCGCCCACGCACACCCGGTTCGGGCGCGACTTTCACCACTCCGATCATGAAGGTATTTCATTTGCCGGCATGACGGACACAAGCGACGACATTCCCGGCATCGGGCAGTATGAGGATTTTCACACAATCGACTGGCAGCGGGACATTGCCCGGGATCGTATGCGCCATCGGTACATAGTGAAAAAGCGGCAGGACTCGTTCTGGGATCTTTTAAAGGGTGCACACGATG] consensusID : consensus_3787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGGCAAGAAGAATCTATCGTCGTGGAATTTTTGCATTCGCGTTCGTGTACGTGCATCAAATCCGGCCCTCCAGTTGGCACGATCACGGTTGGAACCGTCGGACGGTGGTCAAAAAACAAAAGTTTCGTGTAAACAACGGGATTGCAATAGCAGAACACATACTGTATGGTGGGGTGTGCATTACCCTGGCCGTGTGAAGGAATTCTGAACGTGCGTGTGTGTTTGTGTATTGCGTATCGTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGCTGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTGGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCTGACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCATGATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCC] [+] EMBL BM593669 [CCGGCAAGAAGAATCTATCGTCGTGGAATTTTTGCATTCGCGTTCGTGTACGTGCATCAAATCCGGCCCTCCAGTTGGCACGATCACGGTTGGAACCGTCGGACGGTGGTCAAAAAACAAAAGTTTCGTGTAAACAACGGGATTGCAATAGCAGAACACATACTGTATGGTGGGGTGTGCATTACCCTGGCCGTGTGAAGGAATTCTGAACGTGCGTGTGTGTTTGTGTATTGCGTATCGTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGCTGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTTTCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGCCACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTGGGCAGCAAGCCCGGCAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCTGACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCATGATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3787#0 ------------------------------------------------------------ consensus_3787#1 CCGGCAAGAAGAATCTATCGTCGTGGAATTTTTGCATTCGCGTTCGTGTACGTGCATCAA 60 consensus_3787#0 --------------------CCGGCAAAAGCAAAAGTTTTTGATCGTTTTTGGGCATCGT 40 consensus_3787#1 ATCCGGCCCTCCAGTTGGCACGATCACGGTTGGAACCGTCGGACGGTGGTCAAAAAACAA 120 * ** ** * ** ** * * * consensus_3787#0 GA--CGCATAGAAACAATCC--TTACCAAAAAAAAACCCCCCCGGGTTCTGATCGTTCCC 96 consensus_3787#1 AAGTTTCGTGTAAACAACGGGATTGCAATAGCAGAACACATACTGTATGGTGGGGTGTGC 180 * * * ****** ** * * * * *** * * * * ** * consensus_3787#0 CATTCTCCGATCTTCCTCCC---TTCCAAACAGTGCGTGTGTGTTTGTGTCTTGCGTAT- 152 consensus_3787#1 ATTACCCTGGCCGTGTGAAGGAATTCTGAAC-GTGCGTGTGTGTTTGTGTATTGCGTATC 239 * * * * * * *** *** ****************** ******** consensus_3787#0 ----GTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGC 208 consensus_3787#1 GTATGTGTGTTCCTACCAAGTGTGAGGTGTTTCGGTGACGTGGCAGCGGATCGCCGTAGC 299 ******************************************************** consensus_3787#0 TGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTT 268 consensus_3787#1 TGAAAGCTAAAAACACAAGCGTCACGTTGCTGCTGCGGGTCGCAAAAGTATGGAAAAGTT 359 ************************************************************ consensus_3787#0 TCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGC 328 consensus_3787#1 TCCCCTGAAAGGCACCGGCAACATCAGCAGCAGCAACAACCTTTCGATATCATCCGCCGC 419 ************************************************************ consensus_3787#0 CACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTTGGCAGCAAGCCCGG 388 consensus_3787#1 CACCAACCATCCGCTCAGTGGTGATCATCCGTCTTATCAGTCAGTGGGCAGCAAGCCCGG 479 ********************************************* ************** consensus_3787#0 CAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCT 448 consensus_3787#1 CAAAGGTTCTCCAGCGTCCGGTGCGGAACGACACATCACCACCACTACCACCACCTCGCT 539 ************************************************************ consensus_3787#0 GACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCAT 508 consensus_3787#1 GACAACTGCACCGGGCACGGTCGGGGCGGTACCGGTGTACGAGGCGGACGAGGACGGCAT 599 ************************************************************ consensus_3787#0 GATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCCGAACTACTCCTACTCCTCCTA 568 consensus_3787#1 GATCGACATAACGCCCGGGAACGGCGGCCTCACCAACCC--------------------- 638 *************************************** consensus_3787#0 CTCCGCGAATGGTGGCCGGCAGGACGGTGTCGGTGCGCCCAGCAGCGCTGCCAACAGTAG 628 consensus_3787#1 ------------------------------------------------------------ consensus_3787#0 TGCACCGAACATAACCACCACCGCCGGCGCATCCAGCAACGGCGGGGCCAGCATAGGCGG 688 consensus_3787#1 ------------------------------------------------------------ consensus_3787#0 TGGAGAAGGGCCCGGCGGCATGTCTTCGCCCACGCACACCCGGTTCGGGCGCGACTTTCA 748 consensus_3787#1 ------------------------------------------------------------ consensus_3787#0 CCACTCCGATCATGAAGGTATTTCATTTGCCGGCATGACGGACACAAGCGACGACATTCC 808 consensus_3787#1 ------------------------------------------------------------ consensus_3787#0 CGGCATCGGGCAGTATGAGGATTTTCACACAATCGACTGGCAGCGGGACATTGCCCGGGA 868 consensus_3787#1 ------------------------------------------------------------ consensus_3787#0 TCGTATGCGCCATCGGTACATAGTGAAAAAGCGGCAGGACTCGTTCTGGGATCTTTTAAA 928 consensus_3787#1 ------------------------------------------------------------ consensus_3787#0 GGGTGCACACGATG 942 consensus_3787#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||