These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3789#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [TTGTTATAGTGTCACAAGCCGCAAGAAACTCAAACTACCTCGAACTACCGTGTGTATGTATTGGATATGCAGTCGAATTCGACCGAGACTGTGATCGTAACGATGGATATTAAGCCGAAAAGCCGCCCATGGCCAGTTGCGCCGAAAAAAACCATACGGCTTCGTATTCCCGGCCCTAGGGGCAAGTGTTTCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGATTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATATACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAGAAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAACCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTACACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTGCAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATTGTAAGCACAAGGAGGCGCGTAGTCTAATCGCAAA] [+] EMBL BX628794 [TTGTTATAGTGTCACAAGCCGCAAGAAACTCAAACTACCTCGAACTACCGTGTGTATGTATTGGATATGCAGTCGAATTCGACCGAGACTGTGATCGTAACGATGGATATTAAGCCGAAAAGCCGCCCATGGCCAGTTGCGCCGAAAAAAACCATACGGCTTCGTATTCCCGGCCCTAGGGGCAAGTGTTTCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGATTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATATACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAGAAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAACCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTACACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTGCAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATTGTAAGCACAAGGAGGCGCGTAGTCTAATCGCAAA] consensusID : consensus_3789#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence [CCGCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGAGTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATACACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAGAAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAACCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTACACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTGCAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATGTTTGGCATCATCTGCAGAATACCTCGACGAGGAGATGTGTACAGTAACACCATTCCTTGAACTATTTGCGATGAGCATAATCGCATCGACAGAAACAGATACCGAAGCTGAGGATGAAGAGGAGATGCATTATAGATACATTCACAGTAGCTTC] [+] EMBL BM605418 [CCGCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGAGTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATACACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAGAAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAACCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTACACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTGCAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATGTTTGGCATCATCTGCAGAATACCTCGACGAGGAGATGTGTACAGTAACACCATTCCTTGAACTATTTGCGATGAGCATAATCGCATCGACAGAAACAGATACCGAAGCTGAGGATGAAGAGGAGATGCATTATAGATACATTCACAGTAGCTTC] [+] EMBL BM608973 [CCGCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAGCCAAGACCACGTCGAAAGGAGTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATCATTCAATATACACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTGATTCCTGGTAATGATGTGTTGAATAGCAGCATAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3789#0 TTGTTATAGTGTCACAAGCCGCAAGAAACTCAAACTACCTCGAACTACCGTGTGTATGTA 60 consensus_3789#1 ------------------------------------------------------------ consensus_3789#0 TTGGATATGCAGTCGAATTCGACCGAGACTGTGATCGTAACGATGGATATTAAGCCGAAA 120 consensus_3789#1 ------------------------------------------------------------ consensus_3789#0 AGCCGCCCATGGCCAGTTGCGCCGAAAAAAACCATACGGCTTCGTATTCCCGGCCCTAGG 180 consensus_3789#1 ------------------------------------------------------------ consensus_3789#0 GGCAAGTGTTTCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAG 240 consensus_3789#1 --------CCGCACAAACCGGCTCGAATGGCAAGAGCGGATGGCAGCGAAACAAATCAAG 52 ************************************************* consensus_3789#0 CCAAGACCACGTCGAAAGGATTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATC 300 consensus_3789#1 CCAAGACCACGTCGAAAGGAGTTCCGCATCAAAGAGCAAGCGAACATGCACAACAGCATC 112 ******************** *************************************** consensus_3789#0 ATTCAATATATACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTG 360 consensus_3789#1 ATTCAATATACACGCGACAATGCCGAATCAGACGAAAGCGATGATGATTCTGGAACGTTG 172 ********** ************************************************* consensus_3789#0 ATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAG 420 consensus_3789#1 ATTCCTGGTAATGATGTGTTGAATAGCAGCATAGCATCAATCAATATCAGCGGAAGCCAG 232 ************************************************************ consensus_3789#0 AAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAA 480 consensus_3789#1 AAGGAAATTGGTCACAACAGCGGTGAAGCCATCAACGAGATCCGGGACTGTGAAAGCGAA 292 ************************************************************ consensus_3789#0 CCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTAC 540 consensus_3789#1 CCGCACAATCAACACCATGCAATCACTACAGCATCACTCAACCCTGAACATGCCATTTAC 352 ************************************************************ consensus_3789#0 ACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTG 600 consensus_3789#1 ACCGAACCAGGTGTAACGGGTGTACTGACACAGCGGCGGGGCAAGTCCACGGAGTCAGTG 412 ************************************************************ consensus_3789#0 CAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATTGTAAGCACAAGGAGGCGCG 660 consensus_3789#1 CAGGTCCGCCACCAAAACGATGGGCCGCCTGTTCCGGCATGTTTGGCATCATCTGCAGAA 472 **************************************** * *** * * * consensus_3789#0 TAGTCTAATCGCAAA--------------------------------------------- 675 consensus_3789#1 TACCTCGACGAGGAGATGTGTACAGTAACACCATTCCTTGAACTATTTGCGATGAGCATA 532 ** * * consensus_3789#0 ------------------------------------------------------------ consensus_3789#1 ATCGCATCGACAGAAACAGATACCGAAGCTGAGGATGAAGAGGAGATGCATTATAGATAC 592 consensus_3789#0 --------------- consensus_3789#1 ATTCACAGTAGCTTC 607 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||