These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [TTTAATAAATATTCAAAATGCACGATATTATCATTCAAACAGTGTCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCTGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTATGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCTGGCAGGACCTGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGCGTGAACCGGCGGCGAAGGAGGTGTACCGCTGGCTGGCAATCGTTCGACTGGAACGTTAGCTGGACTTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTNTCGANACACTGGGTCGANGAGCAGGCTGGACACAGNGCTCAACTACGGGCAGCCTCGAGGCGGCNCTGCTCCGNGCACTGACCTGAACTTGTGANNTATGACTAACAACGGAAGCCAGTATTAACCAAAGTTATCCCCAATGCTTTACAAATAGCTGTATCCCGAGGTTTACCTATTTCAACATCANNCNCTTCCCCTATCAAAGTTACCTCTTCTAACATNATAGTCATATAGCAGTAGCTAACCGTNTNCACATCTTTAATCCGAAT] [+] EMBL AL694100 [TTTAATAAATATTCAAAATGCACGATATTATCATTCAAACAGTGTCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCTGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTATGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCTGGCAGGACCTGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGCGTGAACCGGCGGCGAAGGAGGTGTACCGCTGGCTGGCAATCGTTCGACTGGAACGTTAGCTGGACTTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTNTCGANACACTGGGTCGANGAGCAGGCTGGACACAGNGCTCAACTACGGGCAGCCTCGAGGCGGCNCTGCTCCGNGCACTGACCTGAACTTGTGANNTATGACTAACAACGGAAGCCAGTATTAACCAAAGTTATCCCCAATGCTTTACAAATAGCTGTATCCCGAGGTTTACCTATTTCAACATCANNCNCTTCCCCTATCAAAGTTACCTCTTCTAACATNATAGTCATATAGCAGTAGCTAACCGTNTNCACATCTTTAATCCGAAT] consensusID : consensus_3793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 759 fasta sequence [ACTTTCGCACCGAGAGGATTATTTTTTTAAATAAATATCCAAAATGCACGATATTATCATTCAAACAGTGTCCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTTGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCGGCAGGACCGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGGTGAACCGGCGGGAAGGAGGTGTACCGCTGGTGGAATCGTTCGACTGGAACGTTAGCTGGATTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTTCGAAATGGGTCGAGAGCAGGTGGAACAGGTAATACGGGAGCTCGAGGCGGTTGTTGGATGACTGAATTTGTGAGTATGACTAACAACGGAAGCCAGTTTAACAAAGTTTCCCCAATGCTTTACAATAGCTGTATCCCGAGGTTTCCTTTTCAAATTAAATTCCTATCAAGTTACTCTTCTAAATTTGTCATTAGAGTGCTAAAG-TTTAATTTTAATCGAATAAAATATGTA] [+] EMBL BX627882 [ACTTTCGCACCGAGAGGATTATTTTTTTAAATAAATATCCAAAATGCACGATATTATCATTCAAACAGTGTCCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTTGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCGGCAGGACCGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGGTGAACCGGCGGGAAGGAGGTGTACCGCTGGTGGAATCGTTCGACTGGAACGTTAGCTGGATTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTTCGAAATGGGTCGAGAGCAGGTGGAACAGGTAATACGGGAGCTCGAGGCGGTTGTTGGATGACTGAATTTGTGAGTATGACTAACAACGGAAGCCAGTTTAACAAAGTTTCCCCAATGCTTTACAATAGCTGTATCCCGAGGTTTCCTTTTCAAATTAAATTCCTATCAAGTTACTCTTCTAAATTTGTCATTAGAGTGCTAAAG TTTAATTTTAATCGAATAAAATATGTA] [+] EMBL BX622583 [ TTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCGTCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTTGGCCCAGCTGCTCGGTCATGCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAATACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCGAACCGGCAGGACCGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGACGGTTGATCGATGAGGTGAACCGGCGGGAAGGAGGTGTACCGCTGGTGGAATCGTTCGACTGGAACGTTAGCTGGATTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCTGTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTTCGAAATGGGTCGAGAGCAGGTGGAACAGGTAATACGGGAGCTCGAGGCGGTTGTTGGATGACTGAATTTGTGAGTATGACTAACAACGGAAGCCAGTTTAACAAAGTTTCCCCAATGCTTTACAATAGCTGTATCCCGAGGTTTCCTTTTCAAATTAAATTCCTATCAAGTTACTCTTCTAAATTTGTCATTAGAGTGCTAAAGTTTTATTTTTAATCGAAT AAATATG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3793#0 --------------------------TTTAATAAATATTCAAAATGCACGATATTATCAT 34 consensus_3793#1 ACTTTCGCACCGAGAGGATTATTTTTTTAAATAAATATCCAAAATGCACGATATTATCAT 60 ** ********* ********************* consensus_3793#0 TCAAACAGTGTC-GAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATCTG 93 consensus_3793#1 TCAAACAGTGTCCGAGCAAGATTTTACAGAGGCCATTTTCCTGCTTATCGATTACATC-G 119 ************ ********************************************* * consensus_3793#0 TCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTTATGGCCCAGCTGCTCGGTCAT 153 consensus_3793#1 TCGAGGTGCCCCGGCAAAGCCAGCAGTGTCGCGACCGTT-TGGCCCAGCTGCTCGGTCAT 178 *************************************** ******************** consensus_3793#0 GCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAA 213 consensus_3793#1 GCCACCTCCAGCGACGAGCTGAAACACACGCTGAAGTTGTTTGAAGCGCTCGTTCGCAAA 238 ************************************************************ consensus_3793#0 TACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCG 273 consensus_3793#1 TACTGCATCGGTGAGGTGGATGAAGTGCGGCTCCGCTCACATTTAGCCCAGCTTTCTCCG 298 ************************************************************ consensus_3793#0 AACCTGGCAGGACCTGGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGAC 333 consensus_3793#1 AACC-GGCAGGACC-GGGTGGTGGAAATAGTGAACCTTCGTCGACCGGAAATAGCACGAC 356 **** ********* ********************************************* consensus_3793#0 GGTTGATCGATGAGCGTGAACCGGCGGCGAAGGAGGTGTACCGCTGGCTGGCAATCGTTC 393 consensus_3793#1 GGTTGATCGATGAG-GTGAACCGGCGG-GAAGGAGGTGTACCGCTGGTGG--AATCGTTC 412 ************** ************ ******************* * ******** consensus_3793#0 GACTGGAACGTTAGCTGGACTTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCT 453 consensus_3793#1 GACTGGAACGTTAGCTGGA-TTATGGGAAGTAGCAGTTTGGCGTCACACCGCAAACAGCT 471 ******************* **************************************** consensus_3793#0 GTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTNTCG 513 consensus_3793#1 GTGCACGGTAGCACTTGCCTGCCGGGATGGTGCAGCGAAGCCGCACACGATCAGCTT-CG 530 ******************************************************** ** consensus_3793#0 ANACACTGGGTCGANGAGCAGGCTGGACACAGNGCTCAACTACGGGCAGCCTCGAGGCGG 573 consensus_3793#1 AAA---TGGGTCGAG-AGCAGGTGGAACAGGTAA------TACGGG--AGCTCGAGGCGG 578 * * ******** ****** * *** ****** ********** consensus_3793#0 CNCTGCTCCGNGCACTGACCTGAACTTGTGANNTATGACTAACAACGGAAGCCAGTATTA 633 consensus_3793#1 TT-------GTTGGATGAC-TGAATTTGTGAGT-ATGACTAACAACGGAAGCCAGT-TTA 628 * **** **** ****** ********************** *** consensus_3793#0 ACCAAAGTTATCCCCAATGCTTTACAAATAGCTGTATCCCGAGGTTTACCTATTTCAACA 693 consensus_3793#1 AC-AAAGTT-TCCCCAATGCTTTACAA-TAGCTGTATCCCGAGGTTTCCTT--TTCAA-A 682 ** ****** ***************** ******************* * * ***** * consensus_3793#0 TCANNCNCTTCCCCTATCAAAGTTACCTCTTCTAACATNATAGTCATATAGCAGTAGCTA 753 consensus_3793#1 TTAAATT-----CCTATCAA-GTTAC-TCTTCTAAATTTGTCATTAGAGTGCTAAAGTTT 735 * * ******** ***** ******** * * * * * ** ** * consensus_3793#0 ACCGTNTNCACATCTTTAATCCGAAT 779 consensus_3793#1 AAT-TTTAATCGAATAAAATATGTA- 759 * * * * * *** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||