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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1083 fasta sequence
[NGGTTTATGATGTGCTGATCGGTCTGCGTACGATCTGACGCATCACACGAACGCGACGGGAGTGAAGCTGGTGTGCTGGAGAAAAAGCTACCCGCACCGAAAACGATCGAAGTGACGGAAGTTGTACCTGAACAAGGCCGCCATCGGGAAGTGCGTTCAAGAAGGAAGCGAAGTGCCATTACGGAGTGCGCTGGACAAAGCTTGAGACCTGGTGTGAGTGTAGAGACCATATTGGGCAAGAAGTCTACGGGTGACAGCTTGGGTGAGCACTTTGCTTGGAGCGGTCAAATGGCACCCGATNGTAGAAGGTAAACGAAACGATCTTGATATTGCGNGGTTGGAAACAACTAAATACTTCCCAAAGACCGGTGCACCGGTAATTGAACAGAAGGATTTAACCCCCGGAAGACCGTCATTNGNATGGGCCCTTTCCGTATACCGGGACATTATTGGGCCCTGNCATTNATGTTACTACCACTTGGCTTNGGAAGAGCCATTAGGCCTTCCCGGGGATGCCGCCGACAGAGCCGAACGAGAACTAGATGACCAAGGCTTAACTATANTTACAGACTTGGGCCCNAAACCGGGTNTTAGTNGGAGCATACCCCGGTATGAAAAAGTTGGCGTCACCCGGNTGGCTATAACNACGGATAGGAAAGTTAAAACAACATNTGGCCCCNGGAGNTANATAGGGAACACCGGGATTTGNTNNGAAAGGAAAAGAATATTACCTTTACACAGGGGAACCCTTCCCACCAATACCCGNAACGCAACNGTNAGTACGCCACAAAGGGGACTNTTGAACTTGAACNATACCCCGAAGCCGNGGGTACACCGACAACCGCGTAACCNGCCTCCAGCTANNNTTTACAACACGGGCNACCGGGGANCCGCACGAAACTTATGGGNCCAACTTTCCCCAGTGGAACCGGTNGAACAACTATAACAGCANCGTCAGCAGAATCATCACAACAGCACAGGCCTATGAAAACGGTGNAACCCNGCACANACCGGTGATNAACACGCTCATGCCGAAAAACACGGGTGAACACATCCGAAAAAAAGCACAGCACGTCNACAACA]
[+] EMBL AL695238 [NGGTTTATGATGTGCTGATCGGTCTGCGTACGATCTGACGCATCACACGAACGCGACGGGAGTGAAGCTGGTGTGCTGGAGAAAAAGCTACCCGCACCGAAAACGATCGAAGTGACGGAAGTTGTACCTGAACAAGGCCGCCATCGGGAAGTGCGTTCAAGAAGGAAGCGAAGTGCCATTACGGAGTGCGCTGGACAAAGCTTGAGACCTGGTGTGAGTGTAGAGACCATATTGGGCAAGAAGTCTACGGGTGACAGCTTGGGTGAGCACTTTGCTTGGAGCGGTCAAATGGCACCCGATNGTAGAAGGTAAACGAAACGATCTTGATATTGCGNGGTTGGAAACAACTAAATACTTCCCAAAGACCGGTGCACCGGTAATTGAACAGAAGGATTTAACCCCCGGAAGACCGTCATTNGNATGGGCCCTTTCCGTATACCGGGACATTATTGGGCCCTGNCATTNATGTTACTACCACTTGGCTTNGGAAGAGCCATTAGGCCTTCCCGGGGATGCCGCCGACAGAGCCGAACGAGAACTAGATGACCAAGGCTTAACTATANTTACAGACTTGGGCCCNAAACCGGGTNTTAGTNGGAGCATACCCCGGTATGAAAAAGTTGGCGTCACCCGGNTGGCTATAACNACGGATAGGAAAGTTAAAACAACATNTGGCCCCNGGAGNTANATAGGGAACACCGGGATTTGNTNNGAAAGGAAAAGAATATTACCTTTACACAGGGGAACCCTTCCCACCAATACCCGNAACGCAACNGTNAGTACGCCACAAAGGGGACTNTTGAACTTGAACNATACCCCGAAGCCGNGGGTACACCGACAACCGCGTAACCNGCCTCCAGCTANNNTTTACAACACGGGCNACCGGGGANCCGCACGAAACTTATGGGNCCAACTTTCCCCAGTGGAACCGGTNGAACAACTATAACAGCANCGTCAGCAGAATCATCACAACAGCACAGGCCTATGAAAACGGTGNAACCCNGCACANACCGGTGATNAACACGCTCATGCCGAAAAACACGGGTGAACACATCCGAAAAAAAGCACAGCACGTCNACAACA]
consensusID : consensus_3794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[AGAATCCCCCGAGGTTATGACAGTGGGGAGCATTTGCTGGCGGTCATGGCACGATGTGAAGCTAACGAACGATCTGATTGCGGTGAAAACTACCTCCAAGACGGTGCACGTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGGCATTGGCCGCATTATGTACTCACTGCTGGAGCATAGCTTCCGGATGCGCGAAGGCGACGAACAGCGCAGCTACTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCTCCGTGCTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCGGCCTCACATCCGTCGACGTGTCGCACAAGGTGGATGATTCGAGCGGTTCGATCGGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTACGGAATTACGATCGATTTCGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAAGTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAACAGGACGCACAAGCTGGGCCGAGGTGGANACAAAAGTATCCACGATTTGAGCAGCAAGAAGCGAGCGCGAAGTAAATCAGAAACAAATCGAATTTACTAGGCGTGGAAGAATAATATGCATTTGGAAATTTAAATGACACTAAACGCTTTATACGATAGCGATCGCCTTTCTATCCCTTTCCCCCAGTGTTNTGTTTACTTAATGTTTAATTTAAAGCATAATTTTACATATAA]
[+] EMBL AL694106 [AGAATCCCCCGAGGTTATGACAGTGGGGAGCATTTGCTGGCGGTCATGGCACGATGTGAAGCTAACGAACGATCTGATTGCGGTGAAAACTACCTCCAAGACGGTGCACGTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGGCATTGGCCGCATTATGTACTCACTGCTGGAGCATAGCTTCCGGATGCGCGAAGGCGACGAACAGCGCAGCTACTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCTCCGTGCTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCGGCCTCACATCCGTCGACGTGTCGCACAAGGTGGATGATTCGAGCGGTTCGATCGGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTACGGAATTACGATCGATTTCGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAAGTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAACAGGACGCACAAGCTGGGCCGAGGTGGANACAAAAGTATCCACGATTTGAGCAGCAAGAAGCGAGCGCGAAGTAAATCAGAAACAAATCGAATTTACTAGGCGTGGAAGAATAATATGCATTTGGAAATTTAAATGACACTAAACGCTTTATACGATAGCGATCGCCTTTCTATCCCTTTCCCCCAGTGTTNTGTTTACTTAATGTTTAATTTAAAGCATAATTTTACATATAA]
consensusID : consensus_3794#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[GCCGCCATCGGGAAGGCGTTCAAGAAGGAAGCGAAGGCCATTACGGAGGCGCTGGCAAAGCTGAGCCTGGGTGAGGTAGAGACCATTGGCAAGAGTCTCGGTGACAGTGGGGAGCATTTGCTGGCGGTCAATGGCACCGATGTGAAGCTAACGAACGATCTGATTGCGGTGAAAACTACCTCCAAGACGGTGCACGTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGGCATTGGCCGCATTATGTACTCACTGCTGGAGCATAGCTTCCGGATGCGCGAAGGCGACGAACAGCGCAGCTACTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCTCCGTGCTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCGGCCCTCACATCCGTCGACGTGTCGCACAAGGTGGATGATTCGAGCGGTTCGATCGGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTACGGAATTACGATCGATTTCGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAAGTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAACAGGACGC]
[+] EMBL BX627936 [GCCGCCATCGGGAAGGCGTTCAAGAAGGAAGCGAAGGCCATTACGGAGGCGCTGGCAAAGCTGAGCCTGGGTGAGGTAGAGACCATTGGCAAGAGTCTCGGTGACAGTGGGGAGCATTTGCTGGCGGTCAATGGCACCGATGTGAAGCTAACGAACGATCTGATTGCGGTGAAAACTACCTCCAAGACGGTGCACGTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGGCATTGGCCGCATTATGTACTCACTGCTGGAGCATAGCTTCCGGATGCGCGAAGGCGACGAACAGCGCAGCTACTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCTCCGTGCTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCGGCCCTCACATCCGTCGACGTGTCGCACAAGGTGGATGATTCGAGCGGTTCGATCGGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTACGGAATTACGATCGATTTCGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAAGTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAACAGGACGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3794#1 ------------------------------------------------------------
consensus_3794#2 ------------------------------------------------------------
consensus_3794#0 NGGTTTATGATGTGCTGATCGGTCTGCGTACGATCTGACGCATCACACGAACGCGACGGG 60
consensus_3794#1 ------------------------------------------------------------
consensus_3794#2 ------------------------------------------------------------
consensus_3794#0 AGTGAAGCTGGTGTGCTGGAGAAAAAGCTACCCGCACCGAAAACGATCGAAGTGACGGAA 120
consensus_3794#1 ------------------------------------------------------------
consensus_3794#2 ----------------GCCGCCATCGGGAAG-GCGTTCAAGAAGGAAGCGAAG-GCCATT 42
consensus_3794#0 GTTGTACCTGAACAAGGCCGCCATCGGGAAGTGCGTTCAAGAAGGAAGCGAAGTGCCATT 180
consensus_3794#1 ------------------------------------------AGAATC-------CCCCG 11
consensus_3794#2 ACGGAG---GCGCTGGCAAAGCTGAGCCTGGGTGAGGTAGAGACCATT-------GGCAA 92
consensus_3794#0 ACGGAGTGCGCTGGACAAAGCTTGAGACCTGGTGTGAGTGTAGAGACCATATTGGGCAAG 240
*
consensus_3794#1 AGGTT-----ATGACAGT---GGGGAGCA-TTTGCT---GGCGGTCA--TGGCAC----- 52
consensus_3794#2 GAGTCTC--GGTGACAGT---GGGGAGCA-TTTGCT---GGCGGTCAA-TGGCACC---- 138
consensus_3794#0 AAGTCTACGGGTGACAGCTTGGGTGAGCACTTTGCTTGGAGCGGTCAAATGGCACCCGAT 300
** ****** ** ***** ****** ******* ******
consensus_3794#1 GATGTGAAGCTAACGAA-CGATCTG---ATTGCGG---TGAAAAC-------TACCTCCA 98
consensus_3794#2 GATGTGAAGCTAACGAA-CGATCTG---ATTGCGG---TGAAAAC-------TACCTCCA 184
consensus_3794#0 NGTAGAAGGTAAACGAAACGATCTTGATATTGCGNGGTTGGAAACAACTAAATACTTCCC 360
* * * ****** ****** ****** ** **** *** ***
consensus_3794#1 AGA---CGGTGCAC-----GTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGG 150
consensus_3794#2 AGA---CGGTGCAC-----GTTGAAGAGATTACCCCGAGCGTCATTGAGCCTTCGTTCGG 236
consensus_3794#0 AAAGACCGGTGCACCGGTAATTGAACAGAAGGATTTAACCCCCGGAAGACCGTCATTNGN 420
* * ******** ***** *** * * * ** ** ** *
consensus_3794#1 CATTGGCCGCATTATGTACT----CACTGCTGGAGCATAGCTTCCG-GATGCGCGAAGGC 205
consensus_3794#2 CATTGGCCGCATTATGTACT----CACTGCTGGAGCATAGCTTCCG-GATGCGCGAAGGC 291
consensus_3794#0 ATGGGCCCTTTCCGTATACCGGGACATTATTGGGCCCTGNCATTNATGTTACTACCACTT 480
* ** * *** ** * *** * * * * * * * *
consensus_3794#1 GAC--GAACAGCGCAGCTA---CTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCT 260
consensus_3794#2 GAC--GAACAGCGCAGCTA---CTTCTCGCTGCCACCGGTTGTGGCTCCGTTGAAGTGCT 346
consensus_3794#0 GGCTTNGGAAGAGCCATTAGGCCTTCCCGGGGATGCCGCCGACAGAGCCGAACGAGAACT 540
* * ** ** ** **** ** * *** * *** ** **
consensus_3794#1 CCGTG-CTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCG 319
consensus_3794#2 CCGTG-CTTCCGCTGAGTAACAATGCCGAGTTTGCACCGTTTGTGAAGAAGATTTCTTCG 405
consensus_3794#0 AGATGACCAAGGCTTAACTATANTTACAGACTTGGGCC---CNAAACCGGGTNTTAGTNG 597
** * *** * * * * * *** ** * * ** * *
consensus_3794#1 GCC-TCACATCCGTC--GACGTGTCG----CACAAGGTGGATGATTCGAGCGGTTCGATC 372
consensus_3794#2 GCCCTCACATCCGTC--GACGTGTCG----CACAAGGTGGATGATTCGAGCGGTTCGATC 459
consensus_3794#0 GAGCATACCCCGGTATGAAAAAGTTGGCGTCACCCGGNTGGCTATAACNACGGATAGGAA 657
* ** * ** * ** * *** ** * ** *** * *
consensus_3794#1 GGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTAC-GGAATTACGATCGATTT 431
consensus_3794#2 GGTCGTCGTTATGCACGCACGGACGAGATTGCCATTCCGTAC-GGAATTACGATCGATTT 518
consensus_3794#0 AGTTAAAACAACATNTGGCCCCNGGAGNTANATAGGGAACACCGGGATTTGNTNNGAAAG 717
** * * * *** * * ** ** *** **
consensus_3794#1 CGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAA-- 489
consensus_3794#2 CGACACGCTGAAGGAACCGCATACGGTGACGCTGCGCGAACGGGACTCGATGAAGCAA-- 576
consensus_3794#0 GAAAAGAATATTACCTTTACACAGGGGAACCCTTC-CCACCAATACCCGN-AACGCAACN 775
* * * ** * ** ** ** * * * * ** ** * ****
consensus_3794#1 GTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAAC-AGGACGCAC 548
consensus_3794#2 GTTCGCATTGGATTGGATGAAGTTGCAAACACTATTCGTGATCTAGCAAC-AGGACGC-- 633
consensus_3794#0 GTNAGTACGCCACAAAGGGGACTNTTGAACTTGAACNATACCCCGAAGCCGNGGGTACAC 835
** * * * * * * *** * * * * ** *
consensus_3794#1 AAGCTGGGCCGAGGTGGANACAAA---AGTATCCACGATTTGAGCAGCAAGAAGCGAGCG 605
consensus_3794#2 ------------------------------------------------------------
consensus_3794#0 CGACAACCGCGTAACCNGCCTCCAGCTANNNTTTACAACACGGGCNACCGGGGANCCGCA 895
consensus_3794#1 CGAAGTAAATCAGAAACAAATCGAATTTACTAGGCGTGGAAGAATAATATGCATTTGGAA 665
consensus_3794#2 ------------------------------------------------------------
consensus_3794#0 CGAAACTTAT--GGGNCCAACTTTCCCCAGTGGAACCGGTNGAACAACTATAACAGCANC 953
consensus_3794#1 ATTTAAATGACACTAAACGCTTTATACGATAGCGATCGCCTTTCTATCCCTTTCCC-CCA 724
consensus_3794#2 ------------------------------------------------------------
consensus_3794#0 GTCAGCAGAATCATCACAACAGCACAGGCCTATGAAAACGGTGNAACCCNGCACANACCG 1013
consensus_3794#1 GTGTTNTGTTTACTTAATGTTTAATTTAAAGCATAATTTTACATATAA------------ 772
consensus_3794#2 ------------------------------------------------------------
consensus_3794#0 GTGATNAACACGCTCA-TGCCGAAAAACACGGGTGAACACATCCGAAAAAAAGCACAGCA 1072
consensus_3794#1 -----------
consensus_3794#2 -----------
consensus_3794#0 CGTCNACAACA 1083
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||