cluster # 3796

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Anopheles gambiae
cluster # 3796 cluster # 3796 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3796#0 length = 685 sequences # 1

consensus_3796#1 length = 527 sequences # 2

consensusID : consensus_3796#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [GAATTCCCCGAGGTTAACGAATGCAGTAAGTCGTTGGCAAAATAAAATGTCTTCGGATAAAGGATTCGATCTTATTAGAGAGTATGAAAGGTCAACTGATCCCATACCAGCGTTTAACGATGATGGCGTCCGTTCTGTGCTGGAGGACATTTCAAAGATCTATCAAGAAAATTATGCACATGCAATAACGTTCAACGAAACGGGTGACCGGAAACTGCTTCCACTCGTCATGTACCGCCACAATCTCATCAAGCGCCAGAAACGATGCGTCCTGGCCTACCTGTCCAATCGTCTGTTTCGTCTCAAACGGCTTCGCTGGCATGTCGGTCCAATCCTGCCGCCCGAAATCAAATCCTGCATCAACGATCCGGAATCGGCGTGGTTCAACAAGTACTCGCGCATACTGGCCGAGTACATGGCCTCCATTCACGACGGGTACGGGTTGAATCTGACGAACGACATCAAACCGCCGAAATCCCTCTACATCGAGGTACGCTGCCTGACCGACTACGGAAAGTTTGAGCTGGAAAGTGGGGAAATAGTGCTGCTGAAGAAGAACAGTCAACCACTACCTACCGAAGCTGCAGTGCGAACAGCTGATCCGGCAGGGCATCCTGCAACACATTACATAGGGACAACGTANTNGTTCTGTTCTGGAATGTTTGAACACCTAGCACCATAAACC]

[+] EMBL AL694114             [GAATTCCCCGAGGTTAACGAATGCAGTAAGTCGTTGGCAAAATAAAATGTCTTCGGATAAAGGATTCGATCTTATTAGAGAGTATGAAAGGTCAACTGATCCCATACCAGCGTTTAACGATGATGGCGTCCGTTCTGTGCTGGAGGACATTTCAAAGATCTATCAAGAAAATTATGCACATGCAATAACGTTCAACGAAACGGGTGACCGGAAACTGCTTCCACTCGTCATGTACCGCCACAATCTCATCAAGCGCCAGAAACGATGCGTCCTGGCCTACCTGTCCAATCGTCTGTTTCGTCTCAAACGGCTTCGCTGGCATGTCGGTCCAATCCTGCCGCCCGAAATCAAATCCTGCATCAACGATCCGGAATCGGCGTGGTTCAACAAGTACTCGCGCATACTGGCCGAGTACATGGCCTCCATTCACGACGGGTACGGGTTGAATCTGACGAACGACATCAAACCGCCGAAATCCCTCTACATCGAGGTACGCTGCCTGACCGACTACGGAAAGTTTGAGCTGGAAAGTGGGGAAATAGTGCTGCTGAAGAAGAACAGTCAACCACTACCTACCGAAGCTGCAGTGCGAACAGCTGATCCGGCAGGGCATCCTGCAACACATTACATAGGGACAACGTANTNGTTCTGTTCTGGAATGTTTGAACACCTAGCACCATAAACC]




>consensus_3796#0
GAATTCCCCGAGGTTAACGAATGCAGTAAGTCGTTGGCAAAATAAAATGTCTTCGGATAA
AGGATTCGATCTTATTAGAGAGTATGAAAGGTCAACTGATCCCATACCAGCGTTTAACGA
TGATGGCGTCCGTTCTGTGCTGGAGGACATTTCAAAGATCTATCAAGAAAATTATGCACA
TGCAATAACGTTCAACGAAACGGGTGACCGGAAACTGCTTCCACTCGTCATGTACCGCCA
CAATCTCATCAAGCGCCAGAAACGATGCGTCCTGGCCTACCTGTCCAATCGTCTGTTTCG
TCTCAAACGGCTTCGCTGGCATGTCGGTCCAATCCTGCCGCCCGAAATCAAATCCTGCAT
CAACGATCCGGAATCGGCGTGGTTCAACAAGTACTCGCGCATACTGGCCGAGTACATGGC
CTCCATTCACGACGGGTACGGGTTGAATCTGACGAACGACATCAAACCGCCGAAATCCCT
CTACATCGAGGTACGCTGCCTGACCGACTACGGAAAGTTTGAGCTGGAAAGTGGGGAAAT
AGTGCTGCTGAAGAAGAACAGTCAACCACTACCTACCGAAGCTGCAGTGCGAACAGCTGA
TCCGGCAGGGCATCCTGCAACACATTACATAGGGACAACGTANTNGTTCTGTTCTGGAAT
GTTTGAACACCTAGCACCATAAACC

consensusID : consensus_3796#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 527
fasta sequence

                              [GTTCTTGTCCTAAAAGTGATCGGCCGAATGCAGTAAGTTCGTTGGCAAAATAAAATGTCGTCGGATAAAGGATTCGATCTTATTAGAGAGTATGAAAGGTCAACTGATCCCATACCAGCGTTTAACGATGATGGCGTCCGTTCTGTGCTGGAGGACATTTCAAAGATCTATCAAGAAAATTATGCACATGCGTAAGAATTTACTTCACGGTAGCACCTTATTTTCTTCCCAATTGGCTCATACTCGCTTTCCACTGGCTCCAAACAGAATAACGTTCAACGAAACGGGTGACCGGAAACTGCTTCCACTCGTCATGTACCGCCACAATCTCATCAAGCGCCAGAAACGATGCGTCCTGGCCTACCTGTCCAATCGTCTGTTTCGTCTCAAACGGCTTCGCTGGCATGTCGGTCCAATCCTGCCGCCCGAAATCAAATCCTGCATCAACGATCCGGAATCGGCGTGGTTCAACAAGTACTCGCGCATACTGGCCGAGTACATGGCCTCCATTCACGACGGGTACGGGT]

[+] EMBL BX627707             [GTTCTTGTCCTAAAAGTGATCGGCCGAATGCAGTAAGTTCGTTGGCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX622142             [gnTCTTGTCCTAAAAGTGATCGGCCGAATGCAGTAAGTTCGTTGGCAAAATAAAATGTCGTCGGATAAAGGATTCGATCTTATTAGAGAGTATGAAAGGTCAACTGATCCCATACCAGCGTTTAACGATGATGGCGTCCGTTCTGTGCTGGAGGACATTTCAAAGATCTATCAAGAAAATTATGCACATGCGTAAGAATTTACTTCACGGTAGCACCTTATTTTCTTCCCAATTGGCTCATACTCGCTTTCCACTGGCTCCAAACAGAATAACGTTCAACGAAACGGGTGACCGGAAACTGCTTCCACTCGTCATGTACCGCCACAATCTCATCAAGCGCCAGAAACGATGCGTCCTGGCCTACCTGTCCAATCGTCTGTTTCGTCTCAAACGGCTTCGCTGGCATGTCGGTCCAATCCTGCCGCCCGAAATCAAATCCTGCATCAACGATCCGGAATCGGCGTGGTTCAACAAGTACTCGCGCATACTGGCCGAGTACATGGCCTCCATTCACGACGGGTACGGGT]




>consensus_3796#1
GTTCTTGTCCTAAAAGTGATCGGCCGAATGCAGTAAGTTCGTTGGCAAAATAAAATGTCG
TCGGATAAAGGATTCGATCTTATTAGAGAGTATGAAAGGTCAACTGATCCCATACCAGCG
TTTAACGATGATGGCGTCCGTTCTGTGCTGGAGGACATTTCAAAGATCTATCAAGAAAAT
TATGCACATGCGTAAGAATTTACTTCACGGTAGCACCTTATTTTCTTCCCAATTGGCTCA
TACTCGCTTTCCACTGGCTCCAAACAGAATAACGTTCAACGAAACGGGTGACCGGAAACT
GCTTCCACTCGTCATGTACCGCCACAATCTCATCAAGCGCCAGAAACGATGCGTCCTGGC
CTACCTGTCCAATCGTCTGTTTCGTCTCAAACGGCTTCGCTGGCATGTCGGTCCAATCCT
GCCGCCCGAAATCAAATCCTGCATCAACGATCCGGAATCGGCGTGGTTCAACAAGTACTC
GCGCATACTGGCCGAGTACATGGCCTCCATTCACGACGGGTACGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3796#0      --GAATTCCCCGAGGTTAA-----CGAATGCAGTAAGT-CGTTGGCAAAATAAAATGTCT 52
consensus_3796#1      GTTCTTGTCCTAAAAGTGATCGGCCGAATGCAGTAAGTTCGTTGGCAAAATAAAATGTCG 60
                           *  **  *   * *     ************** ******************** 

consensus_3796#0      TCGGATAAAGGATTCGATCTTATTAGAGAGTATGAAAGGTCAACTGATCCCATACCAGCG 112
consensus_3796#1      TCGGATAAAGGATTCGATCTTATTAGAGAGTATGAAAGGTCAACTGATCCCATACCAGCG 120
                      ************************************************************

consensus_3796#0      TTTAACGATGATGGCGTCCGTTCTGTGCTGGAGGACATTTCAAAGATCTATCAAGAAAAT 172
consensus_3796#1      TTTAACGATGATGGCGTCCGTTCTGTGCTGGAGGACATTTCAAAGATCTATCAAGAAAAT 180
                      ************************************************************

consensus_3796#0      TATGCACATGC------------------------------------------------- 183
consensus_3796#1      TATGCACATGCGTAAGAATTTACTTCACGGTAGCACCTTATTTTCTTCCCAATTGGCTCA 240
                      ***********                                                 

consensus_3796#0      ---------------------------AATAACGTTCAACGAAACGGGTGACCGGAAACT 216
consensus_3796#1      TACTCGCTTTCCACTGGCTCCAAACAGAATAACGTTCAACGAAACGGGTGACCGGAAACT 300
                                                 *********************************

consensus_3796#0      GCTTCCACTCGTCATGTACCGCCACAATCTCATCAAGCGCCAGAAACGATGCGTCCTGGC 276
consensus_3796#1      GCTTCCACTCGTCATGTACCGCCACAATCTCATCAAGCGCCAGAAACGATGCGTCCTGGC 360
                      ************************************************************

consensus_3796#0      CTACCTGTCCAATCGTCTGTTTCGTCTCAAACGGCTTCGCTGGCATGTCGGTCCAATCCT 336
consensus_3796#1      CTACCTGTCCAATCGTCTGTTTCGTCTCAAACGGCTTCGCTGGCATGTCGGTCCAATCCT 420
                      ************************************************************

consensus_3796#0      GCCGCCCGAAATCAAATCCTGCATCAACGATCCGGAATCGGCGTGGTTCAACAAGTACTC 396
consensus_3796#1      GCCGCCCGAAATCAAATCCTGCATCAACGATCCGGAATCGGCGTGGTTCAACAAGTACTC 480
                      ************************************************************

consensus_3796#0      GCGCATACTGGCCGAGTACATGGCCTCCATTCACGACGGGTACGGGTTGAATCTGACGAA 456
consensus_3796#1      GCGCATACTGGCCGAGTACATGGCCTCCATTCACGACGGGTACGGGT------------- 527
                      ***********************************************             

consensus_3796#0      CGACATCAAACCGCCGAAATCCCTCTACATCGAGGTACGCTGCCTGACCGACTACGGAAA 516
consensus_3796#1      ------------------------------------------------------------
                                                                                  

consensus_3796#0      GTTTGAGCTGGAAAGTGGGGAAATAGTGCTGCTGAAGAAGAACAGTCAACCACTACCTAC 576
consensus_3796#1      ------------------------------------------------------------
                                                                                  

consensus_3796#0      CGAAGCTGCAGTGCGAACAGCTGATCCGGCAGGGCATCCTGCAACACATTACATAGGGAC 636
consensus_3796#1      ------------------------------------------------------------
                                                                                  

consensus_3796#0      AACGTANTNGTTCTGTTCTGGAATGTTTGAACACCTAGCACCATAAACC 685
consensus_3796#1      -------------------------------------------------