These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1344 fasta sequence [CCGCCCACGCGTCCGCTGGTACGAAGGTGGATTCCAAGCAGCGCATCACCGTGCGAAATTTGCGCATTCGCGAGGATACGGCAAAGTACCTCCGCAATCTTGATCCCAATTCGGCCTACTACGACCCAAAGACGCGCTCGATGCGCGACAATCCTACGCCACAGCTCAACCCGGAGGAGACCGAGTTTGCGGGAGAGAACTTTGTGCGCTACTCGGGTGACATCCAGAAGCACGCCCAGGCGCAACTGTTTGCGTGGGAAGCGTACGGCAAGGGTGTGGATGTGCATGTGCTGGCCGAGCCGACGAAGCTGGAGTTGCTGCAAAAGGAATACGAGAAGAAAAAGTCACAGTTCAAGGATGAGGTGAAAAACAAAGTGCTGGAGCAGTACGGCGGGGAGGAGCATTTAGCCGTGCCGCCCAAAGCACTGTTGCTGGCCCAGACGGAAAACTATGTGGAGTATTCGCGATACGGCAAAATTATCAAGGGACAGGATAAGCCCATCATTCGGTCACGGTACGAAGAAGACGTATACATTAACAATCACACCACCGTGTGGGGTTCGTATTGGAGCAACGGTTGCTGGGGTTACAAGTGTTGCGAGTCGATGATCAAAAACTCATACTGCGTGGGAGAGAATGGCAAAGCTGCTACGACTAAGCCAACCAATGAGGTCGCCAACCCGTCCGAAACGGTTGTCGAAAACGACGCGCCTAAAATGTGCCCAGAAAATCAAGCTAAACCACCACCTGCTGCTGTAGCGGATGCATTGCAAACTACTGACAAACAGCAGAGCCAACAAACAGCACGCGGTGCTTCGCAGCCGGAAGGAACAACACCAGTAGGCGGCGACAACAACAGCAGTGACAGCAGCAACAGCGACAGCGATTCCGAATCCGAAGGCACTGCTAAGCGCGGTCGCAAGGAATCGAAGAAATCGAAAAAGAAGCGCAAGAAGGAAAAGAAGCGTCAGCAACGGCGGGAAGAGAAAAACTCACGCAAAAAGTCCGAGGGCAAGGCAGAGAAAGATAAGCTACAGCTTGCGCTGGAAGCGGAAGAGCAAAGCCAGCGGCGGGCAGCAGAACTATTACGCCAGGACGAACGAAAACGTCCGTACAACAGTATGTACGACGTGAAAGCCCCAACTGAGGAGGAAATTGAAGCCTACATGATGAAGCGACGCCGGGAGGAAGATCCAATGCTGGCGTTCATGGACAAGTGAGCGCGACAATCAATCGGCAATATGCATTAGAATGGGCGTGAGTATCGCGTAATATATAATTTGAAGCTTTAGTTTTACGGACAAACGCGCAGATTCAAACTTTATGCNAATAATGTAACTGTAT] [+] EMBL BM624305 [CCGCCCACGCGTCCGCTGGTACGAAGGTGGATTCCAAGCAGCGCATCACCGTGCGAAATTTGCGCATTCGCGAGGATACGGCAAAGTACCTCCGCAATCTTGATCCCAATTCGGCCTACTACGACCCAAAGACGCGCTCGATGCGCGACAATCCTACGCCACAGCTCAACCCGGAGGAGACCGAGTTTGCGGGAGAGAACTTTGTGCGCTACTCGGGTGACATCCAGAAGCACGCCCAGGCGCAACTGTTTGCGTGGGAAGCGTACGGCAAGGGTGTGGATGTGCATGTGCTGGCCGAGCCGACGAAGCTGGAGTTGCTGCAAAAGGAATACGAGAAGAAAAAGTCACAGTTCAAGGATGAGGTGAAAAACAAAGTGCTGGAGCAGTACGGCGGGGAGGAGCATTTAGCCGTGCCGCCCAAAGCACTGTTGCTGGCCCAGACGGAAAACTATGTGGAGTATTCGCGATACGGCAAAATTATCAAGGGACAGGATAAGCCCATCATTCGGTCACGGTACGAAGAAGACGTATACATTAACAATCACACCACCGTGTGGGGTTCGTATTGGAGCAACGGTTGCTGGGGTTACAAGTGTTGCGAGTCGATGATCAAAAACTCATACTGCGTGGGAGAGAATGGCAAAGCTGC ] [+] EMBL BX625239 [ CGTATTGGAGCAACGGTTGCTGGGGTTACAAGTGTTGCGAGTCGATGATCAAAAACTCATACTGCGTGGGAGAGAATGGCAAAGCTGCTACGACTAAGCCAACCAATGAGGTCGCCAACCCGTCCGAAACGGTTGTCGAAAACGACGCGCCTAAAATGTGCCCAGAAAATCAAGCTAAACCACCACCTGCTGCTGTAGCGGATGCATTGCAAACTACTGACAAACAGCAGAGCCAACAAACAGCACGCGGTGCTTCGCAGCCGGAAGGAACAACACCAGTAGGCGGCGACAACAACAGCAGTGACAGCAGCAACAGCGACAGCGATTCCGAATCCGAAGGCACTGCTAAGCGCGGTCGCAAGGAATCGAAGAAATCGAAAAAGAAGCGCAAGAAGGAAAAGAAGCGTCAGCAACGGCGGGAAGAGAAAAACTCACGCAAAAAGTCCGAGGGCAAGGCAGAGAAAGATAAGCTACAGCTTGCGCTGGAAGCGGAAGAGCAAAGCCAGCGGCGGGCAGCAGAACTATTACGCCAGGACGAACGAAAACGTCCGTACAACAGTATGTACGACGTGAAAGCCCCAACTGAGGAGGAAATTGAAGCCTACATGATGAAGCGACGCCGGGAGGAAGATCCAATGCTGGCGTTCATGGACAAGTGAGCGCGACAATCAATCGGCAATATGCATTAGAATGGGCGTGAGTATCGCGTAATATATAATTTGAAGCTTTAGTTTTACGGACAAACGCGCAGATTCAAACTTTATGCNAATAATGTAACTGTAT] consensusID : consensus_3798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 254 fasta sequence [AGCACGCCCAGGCGCAACTTTTTGCGTGTGGAAGCGTACGGCAAGGGTGTGTGATGTGCATGTGCTGGCCGAGCCGACGAAGCTTGGAGTTTGCTTGGCAAAAGGAGTACGAGAAGGAAAAAAGGTTCCGCCAAGGTTCCAAGGGATTGAAGGGTTGGAAAAACCAAAAGGTTGGCTTGGGAAGGCCAAGGTTACCGGGCCGGGGGGAAGGGAAGGCCAATTTTAAGGCCCGGTTGGCCCCGGCCCCAAAAGGC] [+] EMBL AL694164 [AGCACGCCCAGGCGCAACTTTTTGCGTGTGGAAGCGTACGGCAAGGGTGTGTGATGTGCATGTGCTGGCCGAGCCGACGAAGCTTGGAGTTTGCTTGGCAAAAGGAGTACGAGAAGGAAAAAAGGTTCCGCCAAGGTTCCAAGGGATTGAAGGGTTGGAAAAACCAAAAGGTTGGCTTGGGAAGGCCAAGGTTACCGGGCCGGGGGGAAGGGAAGGCCAATTTTAAGGCCCGGTTGGCCCCGGCCCCAAAAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3798#0 CCGCCCACGCGTCCGCTGGTACGAAGGTGGATTCCAAGCAGCGCATCACCGTGCGAAATT 60 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 TGCGCATTCGCGAGGATACGGCAAAGTACCTCCGCAATCTTGATCCCAATTCGGCCTACT 120 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 ACGACCCAAAGACGCGCTCGATGCGCGACAATCCTACGCCACAGCTCAACCCGGAGGAGA 180 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 CCGAGTTTGCGGGAGAGAACTTTGTGCGCTACTCGGGTGACATCCAGAAGCACGCCCAGG 240 consensus_3798#1 ------------------------------------------------AGCACGCCCAGG 12 ************ consensus_3798#0 CGCAACTGTTTGCGTG-GGAAGCGTACGGCAAGGGTGTG-GATGTGCATGTGCTGGCCGA 298 consensus_3798#1 CGCAACTTTTTGCGTGTGGAAGCGTACGGCAAGGGTGTGTGATGTGCATGTGCTGGCCGA 72 ******* ******** ********************** ******************** consensus_3798#0 GCCGACGAAGCT-GGAGTT-GCT--GCAAAAGGAATACGAGAAGAAAAAGTCACAGTTCA 354 consensus_3798#1 GCCGACGAAGCTTGGAGTTTGCTTGGCAAAAGGAGTACGAGAAGGAAAA---AAGGTTCC 129 ************ ****** *** ********* ********* **** * **** consensus_3798#0 AGGATGAGGTGAAAAACAAAGTGCTGGAGCAGTACGGCGGGGAGGAGCATTTAGCCGTGC 414 consensus_3798#1 --GCCAAGGTTC----CAAGGGATTGAAG------GGTTGGAAAAACCAAAAGGTTGGCT 177 * **** *** * ** ** ** ** * * ** * * consensus_3798#0 CGCCCAAAGCACTGTTGCTGGCCCAGACGGAAAACTATGTGGAGTATTCGCGATACGGCA 474 consensus_3798#1 TGGGAAGGCCAAGGTTACCGGGCCGGGGGGAAG-------GGAAGGCCAATTTTAAGGCC 230 * * ** *** * ** ** * **** *** ** *** consensus_3798#0 AAATTATCAAGGGACAGGATAAGCCCATCATTCGGTCACGGTACGAAGAAGACGTATACA 534 consensus_3798#1 CGGTTGGCCCCGGCCCCAAAAGGC------------------------------------ 254 ** * ** * * * ** consensus_3798#0 TTAACAATCACACCACCGTGTGGGGTTCGTATTGGAGCAACGGTTGCTGGGGTTACAAGT 594 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 GTTGCGAGTCGATGATCAAAAACTCATACTGCGTGGGAGAGAATGGCAAAGCTGCTACGA 654 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 CTAAGCCAACCAATGAGGTCGCCAACCCGTCCGAAACGGTTGTCGAAAACGACGCGCCTA 714 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 AAATGTGCCCAGAAAATCAAGCTAAACCACCACCTGCTGCTGTAGCGGATGCATTGCAAA 774 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 CTACTGACAAACAGCAGAGCCAACAAACAGCACGCGGTGCTTCGCAGCCGGAAGGAACAA 834 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 CACCAGTAGGCGGCGACAACAACAGCAGTGACAGCAGCAACAGCGACAGCGATTCCGAAT 894 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 CCGAAGGCACTGCTAAGCGCGGTCGCAAGGAATCGAAGAAATCGAAAAAGAAGCGCAAGA 954 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 AGGAAAAGAAGCGTCAGCAACGGCGGGAAGAGAAAAACTCACGCAAAAAGTCCGAGGGCA 1014 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 AGGCAGAGAAAGATAAGCTACAGCTTGCGCTGGAAGCGGAAGAGCAAAGCCAGCGGCGGG 1074 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 CAGCAGAACTATTACGCCAGGACGAACGAAAACGTCCGTACAACAGTATGTACGACGTGA 1134 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 AAGCCCCAACTGAGGAGGAAATTGAAGCCTACATGATGAAGCGACGCCGGGAGGAAGATC 1194 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 CAATGCTGGCGTTCATGGACAAGTGAGCGCGACAATCAATCGGCAATATGCATTAGAATG 1254 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 GGCGTGAGTATCGCGTAATATATAATTTGAAGCTTTAGTTTTACGGACAAACGCGCAGAT 1314 consensus_3798#1 ------------------------------------------------------------ consensus_3798#0 TCAAACTTTATGCNAATAATGTAACTGTAT 1344 consensus_3798#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||