These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3802#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [CCGCCCACGCGTCCGCGATCTTTTGCGCGGTACGCATACGCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGATTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCCCGCTGGGTGTTCAGCAGGGGCAGCCCACCAATGGAACCGCCCCGGCCACCGATGCTGTACGACCGCAACCTGTCCTACGAGGCTTCACCGAACGTCAGTGGCGGTTCGATCAAGTTTTCTCCTGCGCTGCGGAAGCTAGGCCCGCCGGGCGATACGATACTGGATGATAAATTTATGGAAAACTATGCACATAAGTTCAATCTTTCCTACAGCGAA] [+] EMBL BM612714 [CCGCCCACGCGTCCGCGATCTTTTGCGCGGTACGCATACGCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGATTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCCCGCTGGGTGTTCAGCAGGGGCAGCCCACCAATGGAACCGCCCCGGCCACCGATGCTGTACGACCGCAACCTGTCCTACGAGGCTTCACCGAACGTCAGTGGCGGTTCGATCAAGTTTTCTCCTGCGCTGCGGAAGCTAGGCCCGCCGGGCGATACGATACTGGATGATAAATTTATGGAAAACTATGCACATAAGTTCAATCTTTCCTACAGCGAA] consensusID : consensus_3802#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [AATTGCCCCGAGGCNTTATTCGTCTCCGATCTCGATCTTTTGCGCGGTACGCGTACGCATTTTAGCGAAATGTCTAGCAATCCTGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGCTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCCCGCTGGGTGTTCAGCAGGGGCAGCCAACGATGGAACCGGCCCGGCACCGATGCTGTACGACCGAACTGTCTACGAAAGCGTCACCGAACGTCAGTGGCGGTTCGATCCA] [+] EMBL AL694200 [AATTGCCCCGAGGCNTTATTCGTCTCCGATCTCGATCTTTTGCGCGGTACGCGTACGCATTTTAGCGAAATGTCTAGCAATCCTGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGCTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCCCGCTGGGTGTTCAGCAGGGGCAGCCAACGATGGAACCGGCCCGGCACCGATGCTGTACGACCGAACTGTCTACGAAAGCGTCACCGAACGTCAGTGGCGGTTCGATCCA] consensusID : consensus_3802#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [CCGGCATTTTCTCCGTGTTCCGTCTCCGATCTCGATCTTTTGCGCGGTACGCATACGCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTTGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTATACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCGCCGCTGGGGTGTTCAACAGGGGGCAGCCCACCGATGGAACCGGC] [+] EMBL BM628317 [CCGGCATTTTCTCCGTGTTCCGTCTCCGATCTCGATCTTTTGCGCGGTACGCATACGCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAATCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCACGGTGCACATACTGCTACTGTCCGTGGTGCTGTTTGACATTTCCAACAAGTGTTCGTACTCGTTTTCGAACCTATACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGTGTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGAACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCTGCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTTGCGGTCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCCGCCGCTGGGGTGTTCAACAGGGGGCAGCCCACCGATGGAACCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3802#1 ----AATTGCCCCGAGGCNTTATTCGTCTCCGATCTCGATCTTTTGCGCGGTACGCGTAC 56 consensus_3802#2 CCGGCATTTTCTC----CGTGTTCCGTCTCCGATCTCGATCTTTTGCGCGGTACGCATAC 56 consensus_3802#0 ---------------------CCGCCCACGCGTCCGCGATCTTTTGCGCGGTACGCATAC 39 * ** * ******************** *** consensus_3802#1 GCATTTTAGCGAAATGTCTAGCAATCCTGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAA 116 consensus_3802#2 GCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAA 116 consensus_3802#0 GCATTTTAGCGAAATGTCTAGCAATCCCGGTTCCCCGGTGCAGTGCAGCCCGATCGTGAA 99 *************************** ******************************** consensus_3802#1 TCGGACGCTTGAGCTGAACCTAAATAGGAAGCGCTCGAAGGAATGCTTGCGATGGGGCAC 176 consensus_3802#2 TCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCAC 176 consensus_3802#0 TCGGACGCTTGAGCTGAACCTAAATAGGAAGCGTTCGAAGGAATGCTTGCGATGGGGCAC 159 ********************************* ************************** consensus_3802#1 GGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTC 236 consensus_3802#2 GGTGCACATACTGCTACTGTCCGTGGTGCTGTTTGACATTTCCAACAAGTGTTCGTACTC 236 consensus_3802#0 GGTGCACATACTGCTACTGTCCGTGGTGCTGTTCGACATTTCCAACAAGTGTTCGTACTC 219 ********************************* ************************** consensus_3802#1 GTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGC-ATGCTGTCCTGCAGCATGGT 295 consensus_3802#2 GTTTTCGAACCTATACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGT 296 consensus_3802#0 GTTTTCGAACCTGTACTACGTGGAGTACGTCGCCGCGGCCATGCTGTCCTGCAGCATGGT 279 ************ ************************** ******************** consensus_3802#1 GTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGA 355 consensus_3802#2 GTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGA 356 consensus_3802#0 GTACTACTACACCTGCTACTTTTACTACCTGTTCAGTGCGGAGCCCATCCGGGGCACGGA 339 ************************************************************ consensus_3802#1 ACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCT 415 consensus_3802#2 ACAGCAACGGCGAATACTCAGGTTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCT 416 consensus_3802#0 ACAGCAACGGCGAATACTCAGATTCGATGCAAACGATAGCTCGTTCATCACCACTCCGCT 399 ********************* ************************************** consensus_3802#1 GCAGGCCAAGCAATCGGC-AGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTT 474 consensus_3802#2 GCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTT 476 consensus_3802#0 GCAGGCCAAGCAATCGGCCAGCGCGGACAACACGCCAATGAACGTGTCCACCTCACTGTT 459 ****************** ***************************************** consensus_3802#1 GCGGTCCCTTTCACGAATCGAGCTTTTCGATTGCCTCGCC-CCGCTGGG-TGTTCAGCAG 532 consensus_3802#2 GCGGTCC-TTTCACGAATCGAGCTTTTCGATTGCCTCGCCGCCGCTGGGGTGTTCAACAG 535 consensus_3802#0 GCGGTCC-TTTCACGAATCGAGCTTTTCGATTGCCTCGCC-CCGCTGGG-TGTTCAGCAG 516 ******* ******************************** ******** ****** *** consensus_3802#1 GGG-CAGCCAAC-GATGGAACCGGCCCGGC-ACCGATGCTGTACGACCGAA--CTGTCTA 587 consensus_3802#2 GGGGCAGCCCACCGATGGAACCGGC----------------------------------- 560 consensus_3802#0 GGG-CAGCCCACCAATGGAACCGCCCCGGCCACCGATGCTGTACGACCGCAACCTGTCCT 575 *** ***** ** ********* * consensus_3802#1 CGAAAGCGTCACCGAACGTCAGTGGCGGTTCGATCCA----------------------- 624 consensus_3802#2 ------------------------------------------------------------ consensus_3802#0 ACGAGGCTTCACCGAACGTCAGTGGCGGTTCGATCAAGTTTTCTCCTGCGCTGCGGAAGC 635 consensus_3802#1 ------------------------------------------------------------ consensus_3802#2 ------------------------------------------------------------ consensus_3802#0 TAGGCCCGCCGGGCGATACGATACTGGATGATAAATTTATGGAAAACTATGCACATAAGT 695 consensus_3802#1 -------------------- consensus_3802#2 -------------------- consensus_3802#0 TCAATCTTTCCTACAGCGAA 715 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||