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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1050 fasta sequence
[CCGGCCGTGAACGGCGACGAATTCGGCTGGAAGTGAGTTAGAAGATTAGCTCGAGCAGTGTTCAAGAAAGTGTTCTAAGTCGGGTATTAAGTTGCCAATACCCAGCGAGCAAGGTGTCAGTTTCGAACAGTTAGAGTGTGTGTGTTTTTTATGCATTTTAAACAACTCACGTTCCGTGGTGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGCGCACGATTGCTTAACGCTATCACAGCGATTGAAACGTAGTGCCTGGTGCATCAAAGTGAAGAAGTTAACAAACATCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGCTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGAAAGAAATCGATTTCGAATTTCCAAGTGAAACTGAACGGCAAGAAGCGATCGCTAGCAAAAGCTATATTGCGGAGAATGTAATACCGGTTGGGTTGGAGGTGTACAAAAAGCGACTATTTTTGACACTACCCCCGGGGGGAAGGAAGGCATTTCCAGCATCGTTGGGGCCTACATCAACATCAACGAAACTACAACACAATCACCCCGCCTGCACCCCTATCCAAGCTGGAGTGCACACCGGCGCACCAGTGAGACGGAAGCTCCGGAAATCGTGTCACCCTTCCGGATACGAGCTGATCGCTGCGGTCGTCTCTGGGTGTTGGATACCGGTGTGGAGGAACTGCTGGGAAATACCACCGTCACAAGCCCAACTTCCCTGCTAGTATACGATCTGCATAACGATAATCTGCTGCGCCGATACAAATTCCCGGCGGATCATCTCAAAGAGAACTCCTTCTACGCCAACATTGCGGTAGAAGATAACGATTGCGATGACACGTACGCTTATGCGGCCGATCTCGGCAGCCCGGGACTGGTTGTTTACTCCTGGAAGCAGCAAGAGTCGTGGCGTGTGACACATCACTACT]
[+] EMBL BM622630 [CCGGCCGTGAACGGCGACGAATTCGGCTGGAAGTGAGTTAGAAGATTAGCTCGAGCAGTGTTCAAGAAAGTGTTCTAAGTCGGGTATTAAGTTGCCAATACCCAGCGAGCAAGGTGTCAGTTTCGAACAGTTAGAGTGTGTGTGTTTTTTATGCATTTTAAACAACTCACGTTCCGTGGTGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGCGCACGATTGCTTAACGCTATCACAGCGATTGAAACGTAGTGCCTGGTGCATCAAAGTGAAGAAGTTAACAAACATCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGCTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGAAAGAAATCGATTTCGAATTTCCAAGTGAAACTGAACGGCAAGAAGCGATCGCTAGCAAAAGCTATATTGCGGAGAATGTAATACCGGTTGGGTTGGAGGTGTACAAAAAGCGACTATTTTTGACACTACCCCCGGGGGGAAGGAAGGCATTTCCAGCATCGTTGGGGCCTACATCAACATCAACGAAACTAC ]
[+] EMBL BM604567 [ cCGGCAAGACGGAGCAGTACCAATGATGGAGGTTAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGCTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGAAAGACATCGATTTCGAATTTCCAAGTGAAACTGAACGGCAGGAAGCGATCGCCAGCAAAAGCTACATTGCGGAGAATGTAATACCGGTTGGGTTGGAGGTGTACAAAAAGCGACTATTTTTGACACTACCCC GGTGGAAGGAAGGCA TTCCAGCATCGTT GGCCTACATCAACATCAACGAAACTACAACACAATCACCCCGCCTGCACCCCTATCCAAGCTGGAGTGCACACCGGCGCACCAGTGAGACGGAAGCTCCGGAAATCGTGTCACCCTTCCGGATACGAGCTGATCGCTGCGGTCGTCTCTGGGTGTTGGATACCGGTGTGGAGGAACTGCTGGGAAATACCACCGTCACAAGCCCAACTTCCCTGCTAGTATACGATCTGCATAACGATAATCTGCTGCGCCGATACAAATTCCCGGCGGATCATCTCAAAGAGAACTCCTTCTACGCCAACATTGCGGTAGAAGATAACGATTGCGATGACACGTACGCTTATGCGGCCGATCTCGGCAGCCCGGGACTGGTTGTTTACTCCTGGAAGCAGCAAGAGTCGTGGCGTGTGACACATCACTACT]
consensusID : consensus_3805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[GGCAAGAATCGGCACGNTNGAGTTTTTTATGCATTTTAAACACNCTCACGTTCGGTGGTGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGCGCACGATTGCTTAACGCTATAACAGTGATTGAAACGAAGTGCCTGGTGCATCAAAGTGAAGAAGTTAACAAACAGCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTCAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGTTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGACAAGAAATCGATTTCGAATTTCCAAGTGAACACTGAACGGCAGGAAGCGATCGCCAGCAAAAGCTACATTGCGGAGAATGTAATACCGGTTGGGCTGGAGGTGTACAAAAAGCGACTATNCTTGACGACATAACCCGGTGGGCAAGGAAGGCATTACCAGACATCGTAGGCCTACATCAAGCATTCAANCGAAAACTACAAGCACAAATCACACACCGAACGTGCAANCCCATAT]
[+] EMBL BX467171 [GGCAAGAATCGGCACGNTNGAGTTTTTTATGCATTTTAAACACNCTCACGTTCGGTGGTGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGCGCACGATTGCTTAACGCTATAACAGTGATTGAAACGAAGTGCCTGGTGCATCAAAGTGAAGAAGTTAACAAACAGCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTCAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGTTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGACAAGAAATCGATTTCGAATTTCCAAGTGAACACTGAACGGCAGGAAGCGATCGCCAGCAAAAGCTACATTGCGGAGAATGTAATACCGGTTGGGCTGGAGGTGTACAAAAAGCGACTATNCTTGACGACATAACCCGGTGGGCAAGGAAGGCATTACCAGACATCGTAGGCCTACATCAAGCATTCAANCGAAAACTACAAGCACAAATCACACACCGAACGTGCAANCCCATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3805#0 CCGGCCGTGAACGGCGACGAATTCGGCTGGAAGTGAGTTAGAAGATTAGCTCGAGCAGTG 60
consensus_3805#1 ------------------------------------------------------------
consensus_3805#0 TTCAAGAAAGTGTTCTAAGTCGGGTATTAAGTTGCCAATACCCAGCGAGCAAGGTGTCAG 120
consensus_3805#1 ------------------------------------------------------------
consensus_3805#0 TTTCGAACAGTTAGAGTGTGTGTGTTTTTTATGCATTTTAAACA-ACTCACGTTCCGTGG 179
consensus_3805#1 --GGCAAGAATCGGCACGNTNGAGTTTTTTATGCATTTTAAACACNCTCACGTTCGGTGG 58
** * * * * * ********************* ********* ****
consensus_3805#0 TGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGC 239
consensus_3805#1 TGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGC 118
************************************************************
consensus_3805#0 GCACGATTGCTTAACGCTATCACAGCGATTGAAACGTAGTGCCTGGTGCATCAAAGTGAA 299
consensus_3805#1 GCACGATTGCTTAACGCTATAACAGTGATTGAAACGAAGTGCCTGGTGCATCAAAGTGAA 178
******************** **** ********** ***********************
consensus_3805#0 GAAGTTAACAAACATCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTT-AGAG 358
consensus_3805#1 GAAGTTAACAAACAGCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTCAGAG 238
************** **************************************** ****
consensus_3805#0 GAACGCCTGTGGCGTTGGCTTTTACAGTCAGCTGCTGCATGCTACTAGCCCTTCTACCGG 418
consensus_3805#1 GAACGCCTGTGGCGTTGGCTTTTACAGTCAGTTGCTGCATGCTACTAGCCCTTCTACCGG 298
******************************* ****************************
consensus_3805#0 TGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGA-AAGAAATCGATTTC 477
consensus_3805#1 TGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGACAAGAAATCGATTTC 358
********************************************* **************
consensus_3805#0 GAATTTCCAAGTGAA-ACTGAACGGCAAGAAGCGATCGCTAGCAAAAGCTATATTGCGGA 536
consensus_3805#1 GAATTTCCAAGTGAACACTGAACGGCAGGAAGCGATCGCCAGCAAAAGCTACATTGCGGA 418
*************** *********** *********** *********** ********
consensus_3805#0 GAATGTAATACCGGTTGGGTTGGAGGTGTACAAAAAGCGACTATTTTTGACACTAC--CC 594
consensus_3805#1 GAATGTAATACCGGTTGGGCTGGAGGTGTACAAAAAGCGACTATNCTTGACGACATAACC 478
******************* ************************ ***** * **
consensus_3805#0 CCGGGGGGAAGGAAGGCATTTCCAG-CATCGTTGGGGCCTACATCAACATCAACGAAACT 653
consensus_3805#1 CGGTGGGCAAGGAAGGCATTACCAGACATCGT--AGGCCTACATCAAG--CATTCAANCG 534
* * *** ************ **** ****** ************ ** ** *
consensus_3805#0 ACAAC-ACAATCACCCCGCCTGCACCCC-TATCCAAGCTGGAGTGCACACCGGCGCACCA 711
consensus_3805#1 AAAACTACAAGCACAAATCACACACCGAACGTGCAANCCCATAT---------------- 578
* *** **** *** * **** * *** * *
consensus_3805#0 GTGAGACGGAAGCTCCGGAAATCGTGTCACCCTTCCGGATACGAGCTGATCGCTGCGGTC 771
consensus_3805#1 ------------------------------------------------------------
consensus_3805#0 GTCTCTGGGTGTTGGATACCGGTGTGGAGGAACTGCTGGGAAATACCACCGTCACAAGCC 831
consensus_3805#1 ------------------------------------------------------------
consensus_3805#0 CAACTTCCCTGCTAGTATACGATCTGCATAACGATAATCTGCTGCGCCGATACAAATTCC 891
consensus_3805#1 ------------------------------------------------------------
consensus_3805#0 CGGCGGATCATCTCAAAGAGAACTCCTTCTACGCCAACATTGCGGTAGAAGATAACGATT 951
consensus_3805#1 ------------------------------------------------------------
consensus_3805#0 GCGATGACACGTACGCTTATGCGGCCGATCTCGGCAGCCCGGGACTGGTTGTTTACTCCT 1011
consensus_3805#1 ------------------------------------------------------------
consensus_3805#0 GGAAGCAGCAAGAGTCGTGGCGTGTGACACATCACTACT 1050
consensus_3805#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||