These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1050 fasta sequence [CCGGCCGTGAACGGCGACGAATTCGGCTGGAAGTGAGTTAGAAGATTAGCTCGAGCAGTGTTCAAGAAAGTGTTCTAAGTCGGGTATTAAGTTGCCAATACCCAGCGAGCAAGGTGTCAGTTTCGAACAGTTAGAGTGTGTGTGTTTTTTATGCATTTTAAACAACTCACGTTCCGTGGTGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGCGCACGATTGCTTAACGCTATCACAGCGATTGAAACGTAGTGCCTGGTGCATCAAAGTGAAGAAGTTAACAAACATCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGCTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGAAAGAAATCGATTTCGAATTTCCAAGTGAAACTGAACGGCAAGAAGCGATCGCTAGCAAAAGCTATATTGCGGAGAATGTAATACCGGTTGGGTTGGAGGTGTACAAAAAGCGACTATTTTTGACACTACCCCCGGGGGGAAGGAAGGCATTTCCAGCATCGTTGGGGCCTACATCAACATCAACGAAACTACAACACAATCACCCCGCCTGCACCCCTATCCAAGCTGGAGTGCACACCGGCGCACCAGTGAGACGGAAGCTCCGGAAATCGTGTCACCCTTCCGGATACGAGCTGATCGCTGCGGTCGTCTCTGGGTGTTGGATACCGGTGTGGAGGAACTGCTGGGAAATACCACCGTCACAAGCCCAACTTCCCTGCTAGTATACGATCTGCATAACGATAATCTGCTGCGCCGATACAAATTCCCGGCGGATCATCTCAAAGAGAACTCCTTCTACGCCAACATTGCGGTAGAAGATAACGATTGCGATGACACGTACGCTTATGCGGCCGATCTCGGCAGCCCGGGACTGGTTGTTTACTCCTGGAAGCAGCAAGAGTCGTGGCGTGTGACACATCACTACT] [+] EMBL BM622630 [CCGGCCGTGAACGGCGACGAATTCGGCTGGAAGTGAGTTAGAAGATTAGCTCGAGCAGTGTTCAAGAAAGTGTTCTAAGTCGGGTATTAAGTTGCCAATACCCAGCGAGCAAGGTGTCAGTTTCGAACAGTTAGAGTGTGTGTGTTTTTTATGCATTTTAAACAACTCACGTTCCGTGGTGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGCGCACGATTGCTTAACGCTATCACAGCGATTGAAACGTAGTGCCTGGTGCATCAAAGTGAAGAAGTTAACAAACATCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGCTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGAAAGAAATCGATTTCGAATTTCCAAGTGAAACTGAACGGCAAGAAGCGATCGCTAGCAAAAGCTATATTGCGGAGAATGTAATACCGGTTGGGTTGGAGGTGTACAAAAAGCGACTATTTTTGACACTACCCCCGGGGGGAAGGAAGGCATTTCCAGCATCGTTGGGGCCTACATCAACATCAACGAAACTAC ] [+] EMBL BM604567 [ cCGGCAAGACGGAGCAGTACCAATGATGGAGGTTAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGCTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGAAAGACATCGATTTCGAATTTCCAAGTGAAACTGAACGGCAGGAAGCGATCGCCAGCAAAAGCTACATTGCGGAGAATGTAATACCGGTTGGGTTGGAGGTGTACAAAAAGCGACTATTTTTGACACTACCCC GGTGGAAGGAAGGCA TTCCAGCATCGTT GGCCTACATCAACATCAACGAAACTACAACACAATCACCCCGCCTGCACCCCTATCCAAGCTGGAGTGCACACCGGCGCACCAGTGAGACGGAAGCTCCGGAAATCGTGTCACCCTTCCGGATACGAGCTGATCGCTGCGGTCGTCTCTGGGTGTTGGATACCGGTGTGGAGGAACTGCTGGGAAATACCACCGTCACAAGCCCAACTTCCCTGCTAGTATACGATCTGCATAACGATAATCTGCTGCGCCGATACAAATTCCCGGCGGATCATCTCAAAGAGAACTCCTTCTACGCCAACATTGCGGTAGAAGATAACGATTGCGATGACACGTACGCTTATGCGGCCGATCTCGGCAGCCCGGGACTGGTTGTTTACTCCTGGAAGCAGCAAGAGTCGTGGCGTGTGACACATCACTACT] consensusID : consensus_3805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [GGCAAGAATCGGCACGNTNGAGTTTTTTATGCATTTTAAACACNCTCACGTTCGGTGGTGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGCGCACGATTGCTTAACGCTATAACAGTGATTGAAACGAAGTGCCTGGTGCATCAAAGTGAAGAAGTTAACAAACAGCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTCAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGTTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGACAAGAAATCGATTTCGAATTTCCAAGTGAACACTGAACGGCAGGAAGCGATCGCCAGCAAAAGCTACATTGCGGAGAATGTAATACCGGTTGGGCTGGAGGTGTACAAAAAGCGACTATNCTTGACGACATAACCCGGTGGGCAAGGAAGGCATTACCAGACATCGTAGGCCTACATCAAGCATTCAANCGAAAACTACAAGCACAAATCACACACCGAACGTGCAANCCCATAT] [+] EMBL BX467171 [GGCAAGAATCGGCACGNTNGAGTTTTTTATGCATTTTAAACACNCTCACGTTCGGTGGTGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGCGCACGATTGCTTAACGCTATAACAGTGATTGAAACGAAGTGCCTGGTGCATCAAAGTGAAGAAGTTAACAAACAGCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTCAGAGGAACGCCTGTGGCGTTGGCTTTTACAGTCAGTTGCTGCATGCTACTAGCCCTTCTACCGGTGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGACAAGAAATCGATTTCGAATTTCCAAGTGAACACTGAACGGCAGGAAGCGATCGCCAGCAAAAGCTACATTGCGGAGAATGTAATACCGGTTGGGCTGGAGGTGTACAAAAAGCGACTATNCTTGACGACATAACCCGGTGGGCAAGGAAGGCATTACCAGACATCGTAGGCCTACATCAAGCATTCAANCGAAAACTACAAGCACAAATCACACACCGAACGTGCAANCCCATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3805#0 CCGGCCGTGAACGGCGACGAATTCGGCTGGAAGTGAGTTAGAAGATTAGCTCGAGCAGTG 60 consensus_3805#1 ------------------------------------------------------------ consensus_3805#0 TTCAAGAAAGTGTTCTAAGTCGGGTATTAAGTTGCCAATACCCAGCGAGCAAGGTGTCAG 120 consensus_3805#1 ------------------------------------------------------------ consensus_3805#0 TTTCGAACAGTTAGAGTGTGTGTGTTTTTTATGCATTTTAAACA-ACTCACGTTCCGTGG 179 consensus_3805#1 --GGCAAGAATCGGCACGNTNGAGTTTTTTATGCATTTTAAACACNCTCACGTTCGGTGG 58 ** * * * * * ********************* ********* **** consensus_3805#0 TGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGC 239 consensus_3805#1 TGCTAGGTCGACCACTCTCGACATAAGTGATTCGTGAAACGTTAAGACACCAGAATAGGC 118 ************************************************************ consensus_3805#0 GCACGATTGCTTAACGCTATCACAGCGATTGAAACGTAGTGCCTGGTGCATCAAAGTGAA 299 consensus_3805#1 GCACGATTGCTTAACGCTATAACAGTGATTGAAACGAAGTGCCTGGTGCATCAAAGTGAA 178 ******************** **** ********** *********************** consensus_3805#0 GAAGTTAACAAACATCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTT-AGAG 358 consensus_3805#1 GAAGTTAACAAACAGCCGTTTGCGGCAAGACGGAGCAGTACCAATGATGGAGGTTCAGAG 238 ************** **************************************** **** consensus_3805#0 GAACGCCTGTGGCGTTGGCTTTTACAGTCAGCTGCTGCATGCTACTAGCCCTTCTACCGG 418 consensus_3805#1 GAACGCCTGTGGCGTTGGCTTTTACAGTCAGTTGCTGCATGCTACTAGCCCTTCTACCGG 298 ******************************* **************************** consensus_3805#0 TGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGA-AAGAAATCGATTTC 477 consensus_3805#1 TGCATATCGTTGCAAACGACAATTTGCGGGTGGCATATCAATGGACAAGAAATCGATTTC 358 ********************************************* ************** consensus_3805#0 GAATTTCCAAGTGAA-ACTGAACGGCAAGAAGCGATCGCTAGCAAAAGCTATATTGCGGA 536 consensus_3805#1 GAATTTCCAAGTGAACACTGAACGGCAGGAAGCGATCGCCAGCAAAAGCTACATTGCGGA 418 *************** *********** *********** *********** ******** consensus_3805#0 GAATGTAATACCGGTTGGGTTGGAGGTGTACAAAAAGCGACTATTTTTGACACTAC--CC 594 consensus_3805#1 GAATGTAATACCGGTTGGGCTGGAGGTGTACAAAAAGCGACTATNCTTGACGACATAACC 478 ******************* ************************ ***** * ** consensus_3805#0 CCGGGGGGAAGGAAGGCATTTCCAG-CATCGTTGGGGCCTACATCAACATCAACGAAACT 653 consensus_3805#1 CGGTGGGCAAGGAAGGCATTACCAGACATCGT--AGGCCTACATCAAG--CATTCAANCG 534 * * *** ************ **** ****** ************ ** ** * consensus_3805#0 ACAAC-ACAATCACCCCGCCTGCACCCC-TATCCAAGCTGGAGTGCACACCGGCGCACCA 711 consensus_3805#1 AAAACTACAAGCACAAATCACACACCGAACGTGCAANCCCATAT---------------- 578 * *** **** *** * **** * *** * * consensus_3805#0 GTGAGACGGAAGCTCCGGAAATCGTGTCACCCTTCCGGATACGAGCTGATCGCTGCGGTC 771 consensus_3805#1 ------------------------------------------------------------ consensus_3805#0 GTCTCTGGGTGTTGGATACCGGTGTGGAGGAACTGCTGGGAAATACCACCGTCACAAGCC 831 consensus_3805#1 ------------------------------------------------------------ consensus_3805#0 CAACTTCCCTGCTAGTATACGATCTGCATAACGATAATCTGCTGCGCCGATACAAATTCC 891 consensus_3805#1 ------------------------------------------------------------ consensus_3805#0 CGGCGGATCATCTCAAAGAGAACTCCTTCTACGCCAACATTGCGGTAGAAGATAACGATT 951 consensus_3805#1 ------------------------------------------------------------ consensus_3805#0 GCGATGACACGTACGCTTATGCGGCCGATCTCGGCAGCCCGGGACTGGTTGTTTACTCCT 1011 consensus_3805#1 ------------------------------------------------------------ consensus_3805#0 GGAAGCAGCAAGAGTCGTGGCGTGTGACACATCACTACT 1050 consensus_3805#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||