These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [CAGAATCGCCCAGGTNTTCAAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGGCACCAACTTCCCCGCGACAGTAGATTTACAAATTACTAACTTTCCAAGTACGACAACAAACTCCGTCACACAATTGTGACATACATTCATAATTAGCCGGCCACTCCTCAGCGGCTTATTATTAGCCGCACCACCCGTTCCGCACCCGCTGCTGGGCAATTCTGGAAGCAATTGCGCTTTTTTTTATCACGCTCGTTGTTTCCTCAAGCGGAGAGATTTAATTGCACAGACACACACTAGTCGTACTCGTCGGCTGTGGGAGTGTATGTGTGGGTTGGATAATGCTTTGTTGGATTAGGAGTGCATCTACTCATTTCCGAATGAGTGTTATATGCCTTTACTATGAAGTATATTTACTTCAAATGTGCAATTGTTTACTAGTTTGCGTAACAAGAACAAATCTTTCGGTGTTATTGCTTCCCTTTTTAATTAGAATCAATTGGAGAATTTTCTTTTAACAATTCAAAACTACAGTAGAACGGACCCTTTTGGCCCTTCTGTNTATGTGTTTCACACAACAAAAATCCCAACCGCGCAATGCCTTTATCTTAGTATAATCTTATCAGTTACGGGAGTAACCGGGCTCGCGTGCGCTTAGTCGCGCTTAGTAGTGGTGTGGTCCGTGGTGCTCTAACACTAAAACGCAGAAACATAGTTTTATCCGATTCGAACCCTTTATTCGACGCGAAA] [+] EMBL AL934805 [CAGAATCGCCCAGGTNTTCAAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGGCACCAACTTCCCCGCGACAGTAGATTTACAAATTACTAACTTTCCAAGTACGACAACAAACTCCGTCACACAATTGTGACATACATTCATAATTAGCCGGCCACTCCTCAGCGGCTTATTATTAGCCGCACCACCCGTTCCGCACCCGCTGCTGGGCAATTCTGGAAGCAATTGCGCTTTTTTTTATCACGCTCGTTGTTTCCTCAAGCGGAGAGATTTAATTGCACAGACACACACTAGTCGTACTCGTCGGCTGTGGGAGTGTATGTGTGGGTTGGATAATGCTTTGTTGGATTAGGAGTGCATCTACTCATTTCCGAATGAGTGTTATATGCCTTTACTATGAAGTATATTTACTTCAAATGTGCAATTGTTTACTAGTTTGCGTAACAAGAACAAATCTTTCGGTGTTATTGCTTCCCTTTTTAATTAGAATCAATTGGAGAATTTTCTTTTAACAATTCAAAACTACAGTAGAACGGACCCTTTTGGCCCTTCTGTNTATGTGTTTCACACAACAAAAATCCCAACCGCGCAATGCCTTTATCTTAGTATAATCTTATCAGTTACGGGAGTAACCGGGCTCGCGTGCGCTTAGTCGCGCTTAGTAGTGGTGTGGTCCGTGGTGCTCTAACACTAAAACGCAGAAACATAGTTTTATCCGATTCGAACCCTTTATTCGACGCGAAA] consensusID : consensus_3807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence [CCCGAGGTTTAACGGGCGTATTGAACAAAACCGCACACACACATACATACACACTTTTTGCTCAAGCGCGCGTAGAGAATA-ATTAGAGAGAGAGTGAGAGAACGAGAGAGAAAAGGGGTATCTTGACAATAAGATACAAGTGACAGGGAAGAGACAATAAGGCTTTTAGACCGTAAGATCGTTCGCGCACGTAGTTTAGACTCGCGCACTGCCCGTATTGCTAGAAATATGCACACTCTGTAAGGCTTTACGCGACTAGCCGCGCTCTCTTAGAGGTAAAGTGCAAACGAGAGCTACATTTGGCTCTGTTCTCTACTGAATTAGCTAGCTTTACAGTTTCGAACGCGAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGG-ACCAAATTCCCCGGGACAGTAAATTTACAAATTACTAACTTTCCGAGTACGACAACAAACTCCGTCACACAAA-AGGAGCGCGATCTAGCGTTGCTAACATACATTCATAATTAGCCGA-CACTCCAGCGGACTTATT-ATTAG-CG-GCCACCGTTCCGCA-CCGTTGCATGGGCAATTCTGG-AAGCAATTGCGCTTTAT] [+] EMBL AL697355 [CCCGAGGTTTAACGGGCGTATTGAACAAAACCGCACACACACATACATACACACTTTTTGCTCAAGCGCGCGTAGAGAATA ATTAGAGAGAGAGTGAGAGAACGAGAGAGAAAAGGGGTATCTTGACAATAAGATACAAGTGACAGGGAAGAGACAATAAGGCTTTTAGACCGTAAGATCGTTCGCGCACGTAGTTTAGACTCGCGCACTGCCCGTATTGCTAGAAATATGCACACTCTGTAAGGCTTTACGCGACTAGCCGCGCTCTCTTAGAGGTAAAGTGCAAACGAGAGCTACATTTGGCTCTGTTCTCTACTGAATTAGCTAGCTTTACAGTTTCGAACGCGAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGG ACCAAATTCCCCGGGACAGTAAATTTACAAATTACTAACTTTCCGAGTACGACAACAAACTCCGTCACACAAA AGGAGCGCGATCTAGCGTTGCTAACATACATTCATAATTAGCCGA CACTCCAGCGGACTTATT ATTAG CG GCCACCGTTCCGCA CCGTTGCATGGGCAATTCTGG AAGCAA ] [+] EMBL AL694334 [ gatcccccGAGGTTATATTAGAGAGAGAGTGAGAGAACGAGAGAGAAAAGGGGTATCTTGACAATAAGATACAAGTGACAGGGAAGAGACAATAAGGCTTTTAGACCGTAAGATCGTTCGCGCACGTAGTTTAGACTCGCGCACTGCCCGTATTGCTAGAAATATGCACACTCTGTAAGGCTTTACGCGACTAGCCGCGCTCTCTTAGAGGTAAAGTGCAAACGAGAGCTACATTTGGCTCTGTTCTCTACTGAATTAGCTAGCTTTACAGTTTCGAACGCGAATGTGTANGATATTGCGCACAAAAACAAACACAGCTTCACTCTAAATATCCCAGTCACGGCACCAAATTCCCCGGGACAGTAAATTTACAAATTACTAACTTTCCGAGTACGACAACAAACTCCGTCACACAAACAGGAGCGCGATCTAGCGTTGCTAACATACATTCATAATTAGCCGACCACTCCAGCGG CTTATTCATTAGCCGCGCCACCGTTCCGCACCCGCTGC TGGGCAATTCTGGCAAGCAATTGCGCTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3807#0 --CAGAATCGCCCAGGTNTTCAAATGTGTAAGATATTGCGCACAAAAACAAACACAGCTT 58 consensus_3807#1 CCCGAGGTTTAACGGGCGT---ATTGAACAAAACCGCACACACACATACATACACACTTT 57 * * * ** * * ** ** * * **** * *** ***** ** consensus_3807#0 CACTCTAAATATCCCAGTCACGGCACCAACTTCCCCGCGACAGTAGATTTACAAATTACT 118 consensus_3807#1 TTGCTCAAGCGCGCGTA----GAGAATAATTAG--AGAGAGAGTGAGAGAACGAGAGAGA 111 ** * * * ** * * ** *** ** * * consensus_3807#0 AACTTTCCAAGTACGACAACAAACTCCGTCACACAATTGTGACATACATTCATAATTAGC 178 consensus_3807#1 AAAGGGGTATCT-TGACAATAAGATACAAGTGACAGGGAAGAGACAATAAGGCTTTTAGA 170 ** * * ***** ** * * *** ** * * **** consensus_3807#0 CGGCCACTCCTCAGCGGCTTATTATTAGCCGCACCACCCGTTCCGCACCCGCTGCTGGGC 238 consensus_3807#1 CCGTAAGA--TCGTTCGCGCACG--TAGTTTAGACTCGCGCACTGCCCGTATTGCTAGAA 226 * * * ** ** * *** * * ** * ** * **** * consensus_3807#0 AATTCTGGAAGCAATTGCGCTTTTTTTTATCACGCTCGTTGTTTCCTCAAGCGGAGAGAT 298 consensus_3807#1 ATATGCACACTCTGTAAGGCTTTACGCGACTAGCCGCGCTCTCTT----AGAGGTAAAGT 282 * * * * * ***** * * * ** * * * ** ** * * consensus_3807#0 TTAATTGCACAGACACACACTAGTCGTACTCGTCGGCTGTGGGAG-TGTATGTGTGGGTT 357 consensus_3807#1 GCAAACG---AGAGCTACATTTGGCTCTGTTCTCTACTGAATTAGCTAGCTTTACAGTTT 339 ** * *** *** * * * * ** *** ** * * * * ** consensus_3807#0 GGATAATGCTT-TGTTGGATTAGGAGTGCATCTACTCATTTCCGAATGAGTGTTATATGC 416 consensus_3807#1 CGAACGCGAATGTGTAAGAT--ATTGCGCACAAAAACAAACACAGCTTCACTCTAAATAT 397 ** * * *** *** * *** * ** * * ** ** consensus_3807#0 CTTTACTATGAAGTATATTTACTTCAAATGTGCAATTGT---TTACTAGTTTGCGTA--A 471 consensus_3807#1 CCCAGTCACGGACCAAATTCCCCGGGACAGTAAATTTACAAATTACTAACTTTCCGAGTA 457 * * * * * *** * * ** * ** ****** ** * * * consensus_3807#0 CAAGAACAAATCTTTCGGTGTTATTGCTTCCCTTTTTAATTAGAATCAATTGGAGAATTT 531 consensus_3807#1 CGACAACAAACTCCGTCACACAAAAGGAGCGCGATCTAG-------CGTTGCTAACATAC 510 * * ****** * * * * * ** * * * ** consensus_3807#0 TCTTTTAACAATTCAAAACTACAGTAGAACGGACCCTTTTGGCCCTTCTGTNTATGTGTT 591 consensus_3807#1 ATTCATAATTAGCCGACACTCCAGCGGACTTATTATTAGCGGCCACCGTTCCGCACCGTT 570 * *** * * * *** *** ** * **** * *** consensus_3807#0 TCACACAACAAAAATCCCAACCGCGCAATGC-CTTTATCTTAGTATAATCTTATCAGTTA 650 consensus_3807#1 GCATG----GGCAATTCTGGAAGCA-ATTGCGCTTTAT---------------------- 603 ** *** * ** * *** ****** consensus_3807#0 CGGGAGTAACCGGGCTCGCGTGCGCTTAGTCGCGCTTAGTAGTGGTGTGGTCCGTGGTGC 710 consensus_3807#1 ------------------------------------------------------------ consensus_3807#0 TCTAACACTAAAACGCAGAAACATAGTTTTATCCGATTCGAACCCTTTATTCGACGCGAA 770 consensus_3807#1 ------------------------------------------------------------ consensus_3807#0 A 771 consensus_3807#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||