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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[CAAGAATNCCCCGAGGTTATCGACGCTTCCAGAACGTTTGCTGTACTCGTGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCTGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCTGATGGCGCCACGAGTGGTAAGCATGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCGGTGCCGAGCAAGGGGCCGCGCATCGCCGGTGGCTGTACGCCTTTCTTCTTCGCTCACCACGCTCGCCAGTGTTGCACGAGGCGAGCGTAGAAAATCTGGACGAAATCTCGTACCACGCCGAAGCTGCCAAAGGCACGGACTACAATATGTTGTGCCCGAGACCAACCCCGACCCTGGACAGCCTGGCCTGAAGAAGAAAGTCACATTCGCTTAAGTGAATCCAACACCGTTTCCTCCTCATCTTACACTGCTCCCGCTACCGTTGCCCATCGACCACGTATCAATTTGGACGCGCAAAGCTGCCAGCGGCTGGTGAGACGGCAGTACGCGACCCGGTTCAACACGCTCGAACTGGACCTAAGCTGCTCACGAACACACA]
[+] EMBL AL694519 [CAAGAATNCCCCGAGGTTATCGACGCTTCCAGAACGTTTGCTGTACTCGTGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCTGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCTGATGGCGCCACGAGTGGTAAGCATGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCGGTGCCGAGCAAGGGGCCGCGCATCGCCGGTGGCTGTACGCCTTTCTTCTTCGCTCACCACGCTCGCCAGTGTTGCACGAGGCGAGCGTAGAAAATCTGGACGAAATCTCGTACCACGCCGAAGCTGCCAAAGGCACGGACTACAATATGTTGTGCCCGAGACCAACCCCGACCCTGGACAGCCTGGCCTGAAGAAGAAAGTCACATTCGCTTAAGTGAATCCAACACCGTTTCCTCCTCATCTTACACTGCTCCCGCTACCGTTGCCCATCGACCACGTATCAATTTGGACGCGCAAAGCTGCCAGCGGCTGGTGAGACGGCAGTACGCGACCCGGTTCAACACGCTCGAACTGGACCTAAGCTGCTCACGAACACACA]
consensusID : consensus_3818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[CCCCGAGGTTTCATTTCACCCACCAAGTCAAATACGCAGGACTTGTTTTATCGGAATTTGTTTCCCGCTAGACATAATGGAGCTGTTCCCAGAGCTAGAGAAACGTCGCTCACTGGCGCTCGGATCGCTGGTACAGCTAGATCGCTCCAAAACGCGAACCAAAAACACGGGAAGATCGATGCAGGTGACAAAGGCGCGGGTCAAAACCGATCCAGAGGTGCACGAAGGCATTGTGGTTGATTACGAGTGCGAGGCAAAGGGCTTTGCGTCAGCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAATGCGAATCCCCACGACACTACGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCCATGCACAACTCTCCCAATGCCGTCCGTAGTTGCCGGAGGCAAGCGTCCGGAGGAGAGCTGGAACCTGGCGGTCGACGCTATTGAACGAACCCCGTTAGACCGAAACGATCGGCCAATAACGTGCTGCCGTGCACGGTGCAANCCGTATGGCGAACCCAAGTGTTGGNAGCAAGCAATACCCGCAGACGNTCTGCCTTGACATCTACCAACCAGTCTCATTCCCGACCGCCTTCCAGACAACCGGTTAG]
[+] EMBL AL695398 [CCCCGAGGTTTCATTTCACCCACCAAGTCAAATACGCAGGACTTGTTTTATCGGAATTTGTTTCCCGCTAGACATAATGGAGCTGTTCCCAGAGCTAGAGAAACGTCGCTCACTGGCGCTCGGATCGCTGGTACAGCTAGATCGCTCCAAAACGCGAACCAAAAACACGGGAAGATCGATGCAGGTGACAAAGGCGCGGGTCAAAACCGATCCAGAGGTGCACGAAGGCATTGTGGTTGATTACGAGTGCGAGGCAAAGGGCTTTGCGTCAGCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAATGCGAATCCCCACGACACTACGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCCATGCACAACTCTCCCAATGCCGTCCGTAGTTGCCGGAGGCAAGCGTCCGGAGGAGAGCTGGAACCTGGCGGTCGACGCTATTGAACGAACCCCGTTAGACCGAAACGATCGGCCAATAACGTGCTGCCGTGCACGGTGCAANCCGTATGGCGAACCCAAGTGTTGGNAGCAAGCAATACCCGCAGACGNTCTGCCTTGACATCTACCAACCAGTCTCATTCCCGACCGCCTTCCAGACAACCGGTTAG]
consensusID : consensus_3818#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[TGATTACGAGTGCGAGGCAAAGGGCTTTGCGTCAGCCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAATGCGAATCCCCACGACACTACGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCCATGCACAACCTCTCCCAATGCGTCCGTTGTTGCCGGAGCAAGCGTCCGGAGGAGAGCTGGAACCTGGCGGTCGACGCTATTGACCGACCCCCGTTAGACGAAACGATCGCCAATAACGTGCTGCGGCACGTGCAGCGTATGGCGAACCCAGTGTGGAGCAAGCAATCCCGCAGCGTTCTGCTTGATTTAAAACAGTCTCATCCGACCGCCTTCCAGAACGTTTGCCTGTACTCGGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCGATGGCGCCACGAGTGGTAAGCAGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCGG]
[+] EMBL BX622855 [TGATTACGAGTGCGAGGCAAAGGGCTTTGCGTCAGCCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAATGCGAATCCCCACGACACTACGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCCATGCACAACCTCTCCCAATGCGTCCGTTGTTGCCGGAGCAAGCGTCCGGAGGAGAGCTGGAACCTGGCGGTCGACGCTATTGACCGACCCCCGTTAGACGAAACGATCGCCAATAACGTGCTGCGGCACGTGCAGCGTATGGCGAACCCAGTGTGGAGCAAGCAATCCCGCAGCGTTCTGCTTGATTTAAAACAGTCTCATCCGACCGCCTTCCAGAACGTTTGCCTGTACTCGGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCGATGGCGCCACGAGTGGTAAGCAGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3818#1 ---------------------------CCCCGAGGTTTCATTTCACCCACCAAGT----C 29
consensus_3818#2 ------------------------------------------------------------
consensus_3818#0 CAAGAATNCCCCGAGGTTATCGACGCTTCCAGAACGTTTGCTGTACTCGTGAGGTGTGCC 60
consensus_3818#1 AAATACGCAGGACTTGTTTTATCGGAATTTGTTTCCCGCTAGA-CATAATGGAGCTGTTC 88
consensus_3818#2 ------------------------------------------------------------
consensus_3818#0 AGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCTGCCGCTTCCTGCAGGAGCTGTTC 120
consensus_3818#1 CCAGAGCTAGAG-----AAACGTCGCTCACTGGCGCTCGGATCGCTGGTACAGCTAG--A 141
consensus_3818#2 ------------------------------------------------------------
consensus_3818#0 CTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCTGATGGCGCCACGAGTGG 180
consensus_3818#1 TCGCTCCAAAACGCGAACCAAAAACACGGG--AAGATCGATGCAGGTG--ACAAAGGCGC 197
consensus_3818#2 ------------------------------------------------------------
consensus_3818#0 TAAGCATGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCAC 240
consensus_3818#1 GGGTCAAAACCGATCCAGAGGTGCACGAAGGCATTGTGGTTGATTACGAGTGCGAGGCAA 257
consensus_3818#2 ----------------------------------------TGATTACGAGTGCGAGGCAA 20
consensus_3818#0 TCAACACC-CCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCG-GTGCCGAGCAA 298
* ** **** ****
consensus_3818#1 AGGGCTTTGCGTCAGCC-ATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAAT- 315
consensus_3818#2 AGGGCTTTGCGTCAGCCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAAT- 79
consensus_3818#0 GGGGCCGCGCATCG-----CCGGTGGCT--GTACGCCTTTCTTCTTCGCTCACCACGCTC 351
**** ** ** * ** * * * **** * * * * * ** *** *
consensus_3818#1 GCGAATCCC-CACGACACTA-CGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCC-ATG 372
consensus_3818#2 GCGAATCCC-CACGACACTA-CGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCC-ATG 136
consensus_3818#0 GCCAGTGTTGCACGAGGCGAGCGTAGAAAATCTGGACGAAATC-TCGTACCACGCCGAAG 410
** * * ***** * * ** ** * * ** * * * ** ***** * *
consensus_3818#1 CA--CAAC-TCTCCCAATGCCGTCCGTAGTTGCCGGAGGCAAGC---GTCCGGAGGAG-- 424
consensus_3818#2 CA--CAACCTCTCCCAATGC-GTCCGTTGTTGCCGGAG-CAAGC---GTCCGGAGGAG-- 187
consensus_3818#0 CTGCCAAAGGCACGGACTACAATATGTTGTGCCCGAGACCAACCCCGACCCTGGACAGCC 470
* *** * * * * * * ** ** *** *** * ** * **
consensus_3818#1 -AGCTGGAACCTGGCGGTCG-ACGCTATTGAACGAACCCCGTTAGACCGAAACGATCGGC 482
consensus_3818#2 -AGCTGGAACCTGGCGGTCG-ACGCTATTGACCGACCCCCGTTAGAC-GAAACGATCG-C 243
consensus_3818#0 TGGCCTGAAGAAGAAAGTCACATTCGCTTAAGTGAATCCAAC---ACCGTTTCCTCCTCA 527
** *** * *** * * ** * ** ** ** * * *
consensus_3818#1 CAATAACGTGCTGCCGTGCACGGTGCAANCCGTATGGCGAACCCAAGTGTTGGNAGCAAG 542
consensus_3818#2 CAATAACGTGCTGCGGCAC---GTGCAGC--GTATGGCGAACCCA-GTGT--GGAGCAAG 295
consensus_3818#0 TCTTACACTGCTCCCGCTACCGTTGCCCATCG-ACCACGTATCAATTTGGACGCGCAAAG 586
** **** * * *** * * ** * * * ** * ***
consensus_3818#1 CAATACCCGCAGACGNTCTGCCTTGACATCTACCAACCAGTCT--CATTCCCGACCGCCT 600
consensus_3818#2 CAAT-CCCGCAG-CGTTCTGCTTG---ATTTA--AAACAGTCT--CAT--CCGACCGCCT 344
consensus_3818#0 C--TGCCAGCGGCTGGTGAGACGGCA-GTACGCGACCCGGTTCAACACGCTCGAACTGGA 643
* * ** ** * * * * * * * ** ** *** *
consensus_3818#1 TCCAGACAACCGGTTAG------------------------------------------- 617
consensus_3818#2 TCCAGAACGTTTGCCTGTACTCGGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGC 404
consensus_3818#0 CCTAAGCTGCTCACGAACACACA------------------------------------- 666
* *
consensus_3818#1 ------------------------------------------------------------
consensus_3818#2 TCGGTTCGCGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCA 464
consensus_3818#0 ------------------------------------------------------------
consensus_3818#1 ------------------------------------------------------------
consensus_3818#2 ATCAATCAATGACCGATGGCGCCACGAGTGGTAAGCAGCAGCACCAACAGCAGCCACAAC 524
consensus_3818#0 ------------------------------------------------------------
consensus_3818#1 ------------------------------------------------------------
consensus_3818#2 TCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGA 584
consensus_3818#0 ------------------------------------------------------------
consensus_3818#1 ------------------
consensus_3818#2 ATCTCCCACCGTCGGCGG 602
consensus_3818#0 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||