These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CAAGAATNCCCCGAGGTTATCGACGCTTCCAGAACGTTTGCTGTACTCGTGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCTGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCTGATGGCGCCACGAGTGGTAAGCATGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCGGTGCCGAGCAAGGGGCCGCGCATCGCCGGTGGCTGTACGCCTTTCTTCTTCGCTCACCACGCTCGCCAGTGTTGCACGAGGCGAGCGTAGAAAATCTGGACGAAATCTCGTACCACGCCGAAGCTGCCAAAGGCACGGACTACAATATGTTGTGCCCGAGACCAACCCCGACCCTGGACAGCCTGGCCTGAAGAAGAAAGTCACATTCGCTTAAGTGAATCCAACACCGTTTCCTCCTCATCTTACACTGCTCCCGCTACCGTTGCCCATCGACCACGTATCAATTTGGACGCGCAAAGCTGCCAGCGGCTGGTGAGACGGCAGTACGCGACCCGGTTCAACACGCTCGAACTGGACCTAAGCTGCTCACGAACACACA] [+] EMBL AL694519 [CAAGAATNCCCCGAGGTTATCGACGCTTCCAGAACGTTTGCTGTACTCGTGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCTGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCTGATGGCGCCACGAGTGGTAAGCATGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCGGTGCCGAGCAAGGGGCCGCGCATCGCCGGTGGCTGTACGCCTTTCTTCTTCGCTCACCACGCTCGCCAGTGTTGCACGAGGCGAGCGTAGAAAATCTGGACGAAATCTCGTACCACGCCGAAGCTGCCAAAGGCACGGACTACAATATGTTGTGCCCGAGACCAACCCCGACCCTGGACAGCCTGGCCTGAAGAAGAAAGTCACATTCGCTTAAGTGAATCCAACACCGTTTCCTCCTCATCTTACACTGCTCCCGCTACCGTTGCCCATCGACCACGTATCAATTTGGACGCGCAAAGCTGCCAGCGGCTGGTGAGACGGCAGTACGCGACCCGGTTCAACACGCTCGAACTGGACCTAAGCTGCTCACGAACACACA] consensusID : consensus_3818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [CCCCGAGGTTTCATTTCACCCACCAAGTCAAATACGCAGGACTTGTTTTATCGGAATTTGTTTCCCGCTAGACATAATGGAGCTGTTCCCAGAGCTAGAGAAACGTCGCTCACTGGCGCTCGGATCGCTGGTACAGCTAGATCGCTCCAAAACGCGAACCAAAAACACGGGAAGATCGATGCAGGTGACAAAGGCGCGGGTCAAAACCGATCCAGAGGTGCACGAAGGCATTGTGGTTGATTACGAGTGCGAGGCAAAGGGCTTTGCGTCAGCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAATGCGAATCCCCACGACACTACGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCCATGCACAACTCTCCCAATGCCGTCCGTAGTTGCCGGAGGCAAGCGTCCGGAGGAGAGCTGGAACCTGGCGGTCGACGCTATTGAACGAACCCCGTTAGACCGAAACGATCGGCCAATAACGTGCTGCCGTGCACGGTGCAANCCGTATGGCGAACCCAAGTGTTGGNAGCAAGCAATACCCGCAGACGNTCTGCCTTGACATCTACCAACCAGTCTCATTCCCGACCGCCTTCCAGACAACCGGTTAG] [+] EMBL AL695398 [CCCCGAGGTTTCATTTCACCCACCAAGTCAAATACGCAGGACTTGTTTTATCGGAATTTGTTTCCCGCTAGACATAATGGAGCTGTTCCCAGAGCTAGAGAAACGTCGCTCACTGGCGCTCGGATCGCTGGTACAGCTAGATCGCTCCAAAACGCGAACCAAAAACACGGGAAGATCGATGCAGGTGACAAAGGCGCGGGTCAAAACCGATCCAGAGGTGCACGAAGGCATTGTGGTTGATTACGAGTGCGAGGCAAAGGGCTTTGCGTCAGCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAATGCGAATCCCCACGACACTACGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCCATGCACAACTCTCCCAATGCCGTCCGTAGTTGCCGGAGGCAAGCGTCCGGAGGAGAGCTGGAACCTGGCGGTCGACGCTATTGAACGAACCCCGTTAGACCGAAACGATCGGCCAATAACGTGCTGCCGTGCACGGTGCAANCCGTATGGCGAACCCAAGTGTTGGNAGCAAGCAATACCCGCAGACGNTCTGCCTTGACATCTACCAACCAGTCTCATTCCCGACCGCCTTCCAGACAACCGGTTAG] consensusID : consensus_3818#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [TGATTACGAGTGCGAGGCAAAGGGCTTTGCGTCAGCCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAATGCGAATCCCCACGACACTACGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCCATGCACAACCTCTCCCAATGCGTCCGTTGTTGCCGGAGCAAGCGTCCGGAGGAGAGCTGGAACCTGGCGGTCGACGCTATTGACCGACCCCCGTTAGACGAAACGATCGCCAATAACGTGCTGCGGCACGTGCAGCGTATGGCGAACCCAGTGTGGAGCAAGCAATCCCGCAGCGTTCTGCTTGATTTAAAACAGTCTCATCCGACCGCCTTCCAGAACGTTTGCCTGTACTCGGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCGATGGCGCCACGAGTGGTAAGCAGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCGG] [+] EMBL BX622855 [TGATTACGAGTGCGAGGCAAAGGGCTTTGCGTCAGCCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAATGCGAATCCCCACGACACTACGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCCATGCACAACCTCTCCCAATGCGTCCGTTGTTGCCGGAGCAAGCGTCCGGAGGAGAGCTGGAACCTGGCGGTCGACGCTATTGACCGACCCCCGTTAGACGAAACGATCGCCAATAACGTGCTGCGGCACGTGCAGCGTATGGCGAACCCAGTGTGGAGCAAGCAATCCCGCAGCGTTCTGCTTGATTTAAAACAGTCTCATCCGACCGCCTTCCAGAACGTTTGCCTGTACTCGGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCGATGGCGCCACGAGTGGTAAGCAGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3818#1 ---------------------------CCCCGAGGTTTCATTTCACCCACCAAGT----C 29 consensus_3818#2 ------------------------------------------------------------ consensus_3818#0 CAAGAATNCCCCGAGGTTATCGACGCTTCCAGAACGTTTGCTGTACTCGTGAGGTGTGCC 60 consensus_3818#1 AAATACGCAGGACTTGTTTTATCGGAATTTGTTTCCCGCTAGA-CATAATGGAGCTGTTC 88 consensus_3818#2 ------------------------------------------------------------ consensus_3818#0 AGCTGCTCGGCTGCAACACGTACCGGCTCGGTTCGCTGCCGCTTCCTGCAGGAGCTGTTC 120 consensus_3818#1 CCAGAGCTAGAG-----AAACGTCGCTCACTGGCGCTCGGATCGCTGGTACAGCTAG--A 141 consensus_3818#2 ------------------------------------------------------------ consensus_3818#0 CTGGATCTCGACTTTTTAGGGACCGGCAATCAATCAATGACCTGATGGCGCCACGAGTGG 180 consensus_3818#1 TCGCTCCAAAACGCGAACCAAAAACACGGG--AAGATCGATGCAGGTG--ACAAAGGCGC 197 consensus_3818#2 ------------------------------------------------------------ consensus_3818#0 TAAGCATGCAGCACCAACAGCAGCCACAACTCATGTTAGCCGCAACCACTGCCAAAGCAC 240 consensus_3818#1 GGGTCAAAACCGATCCAGAGGTGCACGAAGGCATTGTGGTTGATTACGAGTGCGAGGCAA 257 consensus_3818#2 ----------------------------------------TGATTACGAGTGCGAGGCAA 20 consensus_3818#0 TCAACACC-CCGCTCCAGATCCAAACGCAGAATCTCCCACCGTCGGCG-GTGCCGAGCAA 298 * ** **** **** consensus_3818#1 AGGGCTTTGCGTCAGCC-ATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAAT- 315 consensus_3818#2 AGGGCTTTGCGTCAGCCCATCCGTCGTTCAATTCGCCCTCGTCTTCCTCCCAACACAAT- 79 consensus_3818#0 GGGGCCGCGCATCG-----CCGGTGGCT--GTACGCCTTTCTTCTTCGCTCACCACGCTC 351 **** ** ** * ** * * * **** * * * * * ** *** * consensus_3818#1 GCGAATCCC-CACGACACTA-CGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCC-ATG 372 consensus_3818#2 GCGAATCCC-CACGACACTA-CGGAGGACGGTCAGCCGCAGTGGTGGTCGTACGCC-ATG 136 consensus_3818#0 GCCAGTGTTGCACGAGGCGAGCGTAGAAAATCTGGACGAAATC-TCGTACCACGCCGAAG 410 ** * * ***** * * ** ** * * ** * * * ** ***** * * consensus_3818#1 CA--CAAC-TCTCCCAATGCCGTCCGTAGTTGCCGGAGGCAAGC---GTCCGGAGGAG-- 424 consensus_3818#2 CA--CAACCTCTCCCAATGC-GTCCGTTGTTGCCGGAG-CAAGC---GTCCGGAGGAG-- 187 consensus_3818#0 CTGCCAAAGGCACGGACTACAATATGTTGTGCCCGAGACCAACCCCGACCCTGGACAGCC 470 * *** * * * * * * ** ** *** *** * ** * ** consensus_3818#1 -AGCTGGAACCTGGCGGTCG-ACGCTATTGAACGAACCCCGTTAGACCGAAACGATCGGC 482 consensus_3818#2 -AGCTGGAACCTGGCGGTCG-ACGCTATTGACCGACCCCCGTTAGAC-GAAACGATCG-C 243 consensus_3818#0 TGGCCTGAAGAAGAAAGTCACATTCGCTTAAGTGAATCCAAC---ACCGTTTCCTCCTCA 527 ** *** * *** * * ** * ** ** ** * * * consensus_3818#1 CAATAACGTGCTGCCGTGCACGGTGCAANCCGTATGGCGAACCCAAGTGTTGGNAGCAAG 542 consensus_3818#2 CAATAACGTGCTGCGGCAC---GTGCAGC--GTATGGCGAACCCA-GTGT--GGAGCAAG 295 consensus_3818#0 TCTTACACTGCTCCCGCTACCGTTGCCCATCG-ACCACGTATCAATTTGGACGCGCAAAG 586 ** **** * * *** * * ** * * * ** * *** consensus_3818#1 CAATACCCGCAGACGNTCTGCCTTGACATCTACCAACCAGTCT--CATTCCCGACCGCCT 600 consensus_3818#2 CAAT-CCCGCAG-CGTTCTGCTTG---ATTTA--AAACAGTCT--CAT--CCGACCGCCT 344 consensus_3818#0 C--TGCCAGCGGCTGGTGAGACGGCA-GTACGCGACCCGGTTCAACACGCTCGAACTGGA 643 * * ** ** * * * * * * * ** ** *** * consensus_3818#1 TCCAGACAACCGGTTAG------------------------------------------- 617 consensus_3818#2 TCCAGAACGTTTGCCTGTACTCGGAGGTGTGCCAGCTGCTCGGCTGCAACACGTACCGGC 404 consensus_3818#0 CCTAAGCTGCTCACGAACACACA------------------------------------- 666 * * consensus_3818#1 ------------------------------------------------------------ consensus_3818#2 TCGGTTCGCGCCGCTTCCTGCAGGAGCTGTTCCTGGATCTCGACTTTTTAGGGACCGGCA 464 consensus_3818#0 ------------------------------------------------------------ consensus_3818#1 ------------------------------------------------------------ consensus_3818#2 ATCAATCAATGACCGATGGCGCCACGAGTGGTAAGCAGCAGCACCAACAGCAGCCACAAC 524 consensus_3818#0 ------------------------------------------------------------ consensus_3818#1 ------------------------------------------------------------ consensus_3818#2 TCATGTTAGCCGCAACCACTGCCAAAGCACTCAACACCCCGCTCCAGATCCAAACGCAGA 584 consensus_3818#0 ------------------------------------------------------------ consensus_3818#1 ------------------ consensus_3818#2 ATCTCCCACCGTCGGCGG 602 consensus_3818#0 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||