These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence [AGAATNCCCCGAGGTTACATCTATATTTCTACTTTACAAGGTATTTCTACACTATTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCCAAAATTTAAGACGTTCTAAACATGCCTATAATTCAAAGCACAAGTTACAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGGNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATTAAAATCAACTTAAGATCAGGTTGGAAAAGAAAATAATAATATATTACAAAATACATCATTGGATACG] [+] EMBL AL929826 [AGAATNCCCCGAGGTTACATCTATATTTCTACTTTACAAGGTATTTCTACACTATTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCCAAAATTTAAGACGTTCTAAACATGCCTATAATTCAAAGCACAAGTTACAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGGNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATTAAAATCAACTTAAGATCAGGTTGGAAAAGAAAATAATAATATATTACAAAATACATCATTGGATACG] consensusID : consensus_3824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAATGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATGTCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCCTACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACTAACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTTAAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTATCTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCTAAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACGATCACGAATGATCATTTGCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGAATGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNACAGTGTGTCTGTCCCT] [+] EMBL AL694550 [CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAATGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATGTCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCCTACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACTAACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTTAAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTATCTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCTAAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACGATCACGAATGATCATTTGCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGAATGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNACAGTGTGTCTGTCCCT] consensusID : consensus_3824#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGCCCACGCGTCCGTCTACACATTTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATGAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCAAAATTTAAGACGTTCTAAACATGCCTATAATTAAAAGCAAAGTTAAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTGTCCCCTTCCAATCATATAAAGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGCGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATTTTTTTTAAAATCAACCTTAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC] [+] EMBL BM602747 [CCGCCCACGCGTCCGTCTACACATTTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATGAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCAAAATTTAAGACGTTCTAAACATGCCTATAATTAAAAGCAAAGTTAAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTGTCCCCTTCCAATCATATAAAGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGCGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATTTTTTTTAAAATCAACCTTAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3824#0 ------------------------------------------------------------ consensus_3824#2 ------------------------------------------------------------ consensus_3824#1 CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAA 60 consensus_3824#0 ------------------------------------------------------------ consensus_3824#2 ------------------------------------------------------------ consensus_3824#1 TGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATG 120 consensus_3824#0 -------------------------------AGAATNCCCCGAGGTTACATCTATATTTC 29 consensus_3824#2 ------------------------------------------------------------ consensus_3824#1 TCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCC 180 consensus_3824#0 TACTTTACAAG-GTATTTCTACACT-ATTTTGGA-GTGGA-TGAGAAGA-TCAAACAACT 84 consensus_3824#2 --CCGCCCACGCGTCCGTCTACACA-TTTTTGGA-GTGGA-TGAGAAGA-TCAAACAACT 54 consensus_3824#1 TACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACT 240 * * * ** ******* ******* ***** ***** ** ********** consensus_3824#0 AACTGA-TGCTTAAATA---TTTATTTCTCTTCTTTTGTGACAAA-TTTCATCGTTTT-- 137 consensus_3824#2 AACTGA-TGCTTAAATA---TTTATTTCTCTTCTTTTGTGACAAA-TTTCATCGTTTT-- 107 consensus_3824#1 AACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTT 300 ****** ******** ** ********************** ******** * * consensus_3824#0 -AATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA 196 consensus_3824#2 -AATGTCCAATGAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA 166 consensus_3824#1 AAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA 360 ********** ************************************************ consensus_3824#0 TCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGGGTCGA-AGTGTCGTAT 255 consensus_3824#2 TCCAAACGTTTGGGTTCTTAA-TTAAGATCAAAACGTCAAACGGGTCGA-AGTGTCGTAT 224 consensus_3824#1 TCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTAT 420 ********************* ************************** ********** consensus_3824#0 CTTAAAGAATCGCCG-TACCG-TCTATGACATCCTAACATGCCAAAATTTAAGACGTTCT 313 consensus_3824#2 CTTAAAGAATCGCCG-TACCG-TCTATGACATCCTAACATGC-AAAATTTAAGACGTTCT 281 consensus_3824#1 CTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCT 480 *************** ***** ******************** ** ************** consensus_3824#0 AAA-CAT-GCCTAT-AATTCAAAGCAC-AAGTTACAA----ATGTAAACGATATCATACG 365 consensus_3824#2 AAA-CAT-GCCTAT-AATTAAAAGCA--AAGTTA-AA----ATGTAAACGATATCATACG 331 consensus_3824#1 AAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACG 540 *** *** ****** * ** ** * ****** * * ************** consensus_3824#0 ATCACGAATGATCATTTTGCTACGA-ACATACTGGCTACATGTTGAGCTAGATCT-GAGA 423 consensus_3824#2 ATCACGAATGATCATTTTGCTACGA-ACATACTGGCTACATGTTGAGCTAGATCT-GAGA 389 consensus_3824#1 ATCACGAATGATCATTT-GCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGA 599 ***************** ******* ***************************** **** consensus_3824#0 ATGATTT-GTGTGC-TTACTTAAAC-ATTTAACAACCCTATAATTCTATATGTTTCATT- 479 consensus_3824#2 ATGATTTTGTGTGC-TTACTTAAAC-ATTTAACAACCCTATAATTCTATATGTTTCATT- 446 consensus_3824#1 ATGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNA 659 **** * * **** ********** *********** ***************** consensus_3824#0 TAGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTA 539 consensus_3824#2 TAGTGTGTCT-GTCCCCTTCCAAT-CATATAAA-GTCATCACTTGCTGACGGGGGATGTA 503 consensus_3824#1 CAGTGTGTCT-GTCCCT------------------------------------------- 675 ********* ***** consensus_3824#0 TGCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTG 599 consensus_3824#2 TGCGAAGAATA---TTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTG 560 consensus_3824#1 ------------------------------------------------------------ consensus_3824#0 GGNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATT---AAAATCAAC-T 655 consensus_3824#2 G-CGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATTTTTTTTAAAATCAACCT 619 consensus_3824#1 ------------------------------------------------------------ consensus_3824#0 TAAGATCAGGTTGGAAAAGAAAA-TAATAATATATTACAAAATACATCATTGGATACG 712 consensus_3824#2 TAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC-------------------- 657 consensus_3824#1 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||