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Anopheles gambiae
cluster # 3824 cluster # 3824       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3824#0 length = 712 sequences # 1  
consensus_3824#1 length = 675 sequences # 1  
consensus_3824#2 length = 657 sequences # 1  

consensusID : consensus_3824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence
                              [AGAATNCCCCGAGGTTACATCTATATTTCTACTTTACAAGGTATTTCTACACTATTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCCAAAATTTAAGACGTTCTAAACATGCCTATAATTCAAAGCACAAGTTACAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGGNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATTAAAATCAACTTAAGATCAGGTTGGAAAAGAAAATAATAATATATTACAAAATACATCATTGGATACG]

[+] EMBL AL929826             [AGAATNCCCCGAGGTTACATCTATATTTCTACTTTACAAGGTATTTCTACACTATTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCCAAAATTTAAGACGTTCTAAACATGCCTATAATTCAAAGCACAAGTTACAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGGNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATTAAAATCAACTTAAGATCAGGTTGGAAAAGAAAATAATAATATATTACAAAATACATCATTGGATACG]


>consensus_3824#0 AGAATNCCCCGAGGTTACATCTATATTTCTACTTTACAAGGTATTTCTACACTATTTTGG AGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTG ACAAATTTCATCGTTTTAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCC TTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGG GTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCCAAAA TTTAAGACGTTCTAAACATGCCTATAATTCAAAGCACAAGTTACAAATGTAAACGATATC ATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTG AGAATGATTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTT AGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTAT GCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGG GNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATTAAAATCAACTTAAGA TCAGGTTGGAAAAGAAAATAATAATATATTACAAAATACATCATTGGATACG



consensusID : consensus_3824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence
                              [CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAATGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATGTCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCCTACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACTAACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTTAAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTATCTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCTAAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACGATCACGAATGATCATTTGCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGAATGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNACAGTGTGTCTGTCCCT]

[+] EMBL AL694550             [CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAATGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATGTCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCCTACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACTAACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTTAAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTATCTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCTAAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACGATCACGAATGATCATTTGCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGAATGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNACAGTGTGTCTGTCCCT]


>consensus_3824#1 CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAA TGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATG TCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCC TACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACT AACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTT AAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA TCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTAT CTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCT AAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACG ATCACGAATGATCATTTGCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGAA TGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNAC AGTGTGTCTGTCCCT



consensusID : consensus_3824#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence
                              [CCGCCCACGCGTCCGTCTACACATTTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATGAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCAAAATTTAAGACGTTCTAAACATGCCTATAATTAAAAGCAAAGTTAAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTGTCCCCTTCCAATCATATAAAGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGCGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATTTTTTTTAAAATCAACCTTAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC]

[+] EMBL BM602747             [CCGCCCACGCGTCCGTCTACACATTTTTGGAGTGGATGAGAAGATCAAACAACTAACTGATGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATGAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGGTTCTTAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGTACCGTCTATGACATCCTAACATGCAAAATTTAAGACGTTCTAAACATGCCTATAATTAAAAGCAAAGTTAAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACATACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTTGTGTGCTTACTTAAACATTTAACAACCCTATAATTCTATATGTTTCATTTAGTGTGTCTGTCCCCTTCCAATCATATAAAGTCATCACTTGCTGACGGGGGATGTATGCGAAGAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTGGCGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATTTTTTTTAAAATCAACCTTAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC]


>consensus_3824#2 CCGCCCACGCGTCCGTCTACACATTTTTGGAGTGGATGAGAAGATCAAACAACTAACTGA TGCTTAAATATTTATTTCTCTTCTTTTGTGACAAATTTCATCGTTTTAATGTCCAATGAG ATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGATCCAAACGTTTGGG TTCTTAATTAAGATCAAAACGTCAAACGGGTCGAAGTGTCGTATCTTAAAGAATCGCCGT ACCGTCTATGACATCCTAACATGCAAAATTTAAGACGTTCTAAACATGCCTATAATTAAA AGCAAAGTTAAAATGTAAACGATATCATACGATCACGAATGATCATTTTGCTACGAACAT ACTGGCTACATGTTGAGCTAGATCTGAGAATGATTTTGTGTGCTTACTTAAACATTTAAC AACCCTATAATTCTATATGTTTCATTTAGTGTGTCTGTCCCCTTCCAATCATATAAAGTC ATCACTTGCTGACGGGGGATGTATGCGAAGAATATTTTTTTCCATTAATATCAACCCGCT TGAGGAGTGTGACATAATTGGCGTTAACATTGATTAAAATTGATCAGATGAATATGTGTA TTTTTTTTAAAATCAACCTTAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3824#0      ------------------------------------------------------------
consensus_3824#2      ------------------------------------------------------------
consensus_3824#1      CCCCGAGGTTATGAAAATATGAACATTATGTNCAAAATTGCAGTAATTGCTTCATCAAAA 60
                                                                                  

consensus_3824#0      ------------------------------------------------------------
consensus_3824#2      ------------------------------------------------------------
consensus_3824#1      TGTAAACCCGGAGAAAAAGAATCACTTCTCTGTGTATGTGGTGTATACTAGTATATTATG 120
                                                                                  

consensus_3824#0      -------------------------------AGAATNCCCCGAGGTTACATCTATATTTC 29
consensus_3824#2      ------------------------------------------------------------
consensus_3824#1      TCTAGATCAATTCTTAATACTAACGCTGTGCGGGATCGTTTTTCTACACTCTATATTTCC 180
                                                                                  

consensus_3824#0      TACTTTACAAG-GTATTTCTACACT-ATTTTGGA-GTGGA-TGAGAAGA-TCAAACAACT 84
consensus_3824#2      --CCGCCCACGCGTCCGTCTACACA-TTTTTGGA-GTGGA-TGAGAAGA-TCAAACAACT 54
consensus_3824#1      TACTTTAGAAGCGTATTTCTACACACTTTTTGGACGTGGACTGAGANGACTCAAACAACT 240
                        *     * * **   *******   ******* ***** ***** ** **********

consensus_3824#0      AACTGA-TGCTTAAATA---TTTATTTCTCTTCTTTTGTGACAAA-TTTCATCGTTTT-- 137
consensus_3824#2      AACTGA-TGCTTAAATA---TTTATTTCTCTTCTTTTGTGACAAA-TTTCATCGTTTT-- 107
consensus_3824#1      AACTGACTGCTTAAACTACTTTCATTTCTCTTCTTTTGTGACAAAATTTCATCGCTCTTT 300
                      ****** ********     ** ********************** ******** * *  

consensus_3824#0      -AATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA 196
consensus_3824#2      -AATGTCCAATGAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA 166
consensus_3824#1      AAATGTCCAATTAGATGAACATGCGGCTCCGAGTAAGATTAGCCTTTGACGACATTTTGA 360
                       ********** ************************************************

consensus_3824#0      TCCAAACGTTTGGGTTCTTAAATTAAGATCAAAACGTCAAACGGGTCGA-AGTGTCGTAT 255
consensus_3824#2      TCCAAACGTTTGGGTTCTTAA-TTAAGATCAAAACGTCAAACGGGTCGA-AGTGTCGTAT 224
consensus_3824#1      TCCAAACGTTTGGGTTCTTAATNTAAGATCAAAACGTCAAACGGGTCGACAGTGTCGTAT 420
                      *********************  ************************** **********

consensus_3824#0      CTTAAAGAATCGCCG-TACCG-TCTATGACATCCTAACATGCCAAAATTTAAGACGTTCT 313
consensus_3824#2      CTTAAAGAATCGCCG-TACCG-TCTATGACATCCTAACATGC-AAAATTTAAGACGTTCT 281
consensus_3824#1      CTTAAAGAATCGCCGCTACCGCTCTATGACATCCTAACATGCAAACATTTAAGACGTTCT 480
                      *************** ***** ******************** ** **************

consensus_3824#0      AAA-CAT-GCCTAT-AATTCAAAGCAC-AAGTTACAA----ATGTAAACGATATCATACG 365
consensus_3824#2      AAA-CAT-GCCTAT-AATTAAAAGCA--AAGTTA-AA----ATGTAAACGATATCATACG 331
consensus_3824#1      AAAACATTGCCTATCANTTAAACACGCAAAGTTAACACACTGTTNNAACGATATCATACG 540
                      *** *** ****** * ** **  *   ******  *     *   **************

consensus_3824#0      ATCACGAATGATCATTTTGCTACGA-ACATACTGGCTACATGTTGAGCTAGATCT-GAGA 423
consensus_3824#2      ATCACGAATGATCATTTTGCTACGA-ACATACTGGCTACATGTTGAGCTAGATCT-GAGA 389
consensus_3824#1      ATCACGAATGATCATTT-GCTACGACACATACTGGCTACATGTTGAGCTAGATCTTGAGA 599
                      ***************** ******* ***************************** ****

consensus_3824#0      ATGATTT-GTGTGC-TTACTTAAAC-ATTTAACAACCCTATAATTCTATATGTTTCATT- 479
consensus_3824#2      ATGATTTTGTGTGC-TTACTTAAAC-ATTTAACAACCCTATAATTCTATATGTTTCATT- 446
consensus_3824#1      ATGACTAAGAGTGCCTTACTTAAACCATTTAACAACCTATAAATTCTATATGTTTCATNA 659
                      **** *  * **** ********** ***********    *****************  

consensus_3824#0      TAGTGTGTCTAGTCCCCTTCCAATACATATAAACGTCATCACTTGCTGACGGGGGATGTA 539
consensus_3824#2      TAGTGTGTCT-GTCCCCTTCCAAT-CATATAAA-GTCATCACTTGCTGACGGGGGATGTA 503
consensus_3824#1      CAGTGTGTCT-GTCCCT------------------------------------------- 675
                       ********* *****                                            

consensus_3824#0      TGCGAAGAATAATATTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTG 599
consensus_3824#2      TGCGAAGAATA---TTTTTTTCCATTAATATCAACCCGCTTGAGGAGTGTGACATAATTG 560
consensus_3824#1      ------------------------------------------------------------
                                                                                  

consensus_3824#0      GGNGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATNATT---AAAATCAAC-T 655
consensus_3824#2      G-CGTTAACATTGATTAAAATTGATCAGATGAATATGTGTATTTTTTTTAAAATCAACCT 619
consensus_3824#1      ------------------------------------------------------------
                                                                                  

consensus_3824#0      TAAGATCAGGTTGGAAAAGAAAA-TAATAATATATTACAAAATACATCATTGGATACG 712
consensus_3824#2      TAAGATCAGGTTGCAAAGCAAAACTAATAATATATTAC-------------------- 657
consensus_3824#1      ----------------------------------------------------------
                                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)