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Anopheles gambiae
cluster # 3828 cluster # 3828       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3828#0 length = 956 sequences # 1  
consensus_3828#1 length = 846 sequences # 2  

consensusID : consensus_3828#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 956
fasta sequence
                              [GCAGAATCCCGNGGTTACGTACAGTCGCAGCACCAACGGNGGTTACACGGTGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTACNGGGCGGATATGACCTGACGTTCAAAACTGCCACAACCAAACGACGCTTCTGGCGTACGGTGCCGATACAGCAAGTGGCGGCTGGCGTCGCGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGCATCTCTNTGCTTCGNCTATACAACTACACCTACGGATAGTTGACGATATCTAACTACGACTACTTTNTACGCCAAACCGTACATACCACGACTGCTGAACTACCAACGGTGTATTACCCGGATTGAAGGACGCATGAGGGAGGAGGAANAGGAGGATTGTAGGCGGACAGGGNTTGTACCAGAGGAGGAGTGACCTGCCGGGACAAACGGTTANGCCTTAAAAACGACGGATGGACNCAGTANTAAGCCAANCCTGGAACACGGTATTNCTTACACTACANTACAGAAAACGNTACCCCGGAAAAAGTTGCGAANCGGCGCGACTAGNGCGAAAACCCCGGCACACAAGGGGAAAGNCCANGGACCCCCCANGAGGGCCCCCGGCCCCCGGGGCCTATAAGCGGCACCCCACACCAAACCGAATCCCAAGCNAACANACGGGGCGCTTAGGGGTANAAAACGACAGCAAGCACCCCNGCAAGACATACAACGACAACACACGAANGGCCACACCGTAANGCNCTTTCCATCNNCACTNCCNCACCCCGGCAACCACACACCGCNANACNCCANACCCGCCTACAACNACACAAGGGCGAGAACCCAACCCGGCATNNCACCAGCCAACATAGTAAGCGACACNCAAAGTNAAATAGANGAN]

[+] EMBL AL694599             [GCAGAATCCCGNGGTTACGTACAGTCGCAGCACCAACGGNGGTTACACGGTGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTACNGGGCGGATATGACCTGACGTTCAAAACTGCCACAACCAAACGACGCTTCTGGCGTACGGTGCCGATACAGCAAGTGGCGGCTGGCGTCGCGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGCATCTCTNTGCTTCGNCTATACAACTACACCTACGGATAGTTGACGATATCTAACTACGACTACTTTNTACGCCAAACCGTACATACCACGACTGCTGAACTACCAACGGTGTATTACCCGGATTGAAGGACGCATGAGGGAGGAGGAANAGGAGGATTGTAGGCGGACAGGGNTTGTACCAGAGGAGGAGTGACCTGCCGGGACAAACGGTTANGCCTTAAAAACGACGGATGGACNCAGTANTAAGCCAANCCTGGAACACGGTATTNCTTACACTACANTACAGAAAACGNTACCCCGGAAAAAGTTGCGAANCGGCGCGACTAGNGCGAAAACCCCGGCACACAAGGGGAAAGNCCANGGACCCCCCANGAGGGCCCCCGGCCCCCGGGGCCTATAAGCGGCACCCCACACCAAACCGAATCCCAAGCNAACANACGGGGCGCTTAGGGGTANAAAACGACAGCAAGCACCCCNGCAAGACATACAACGACAACACACGAANGGCCACACCGTAANGCNCTTTCCATCNNCACTNCCNCACCCCGGCAACCACACACCGCNANACNCCANACCCGCCTACAACNACACAAGGGCGAGAACCCAACCCGGCATNNCACCAGCCAACATAGTAAGCGACACNCAAAGTNAAATAGANGAN]


>consensus_3828#0 GCAGAATCCCGNGGTTACGTACAGTCGCAGCACCAACGGNGGTTACACGGTGCACTACTA TGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTAC AACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTACNGGGCGGATATGA CCTGACGTTCAAAACTGCCACAACCAAACGACGCTTCTGGCGTACGGTGCCGATACAGCA AGTGGCGGCTGGCGTCGCGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGCATCTC TNTGCTTCGNCTATACAACTACACCTACGGATAGTTGACGATATCTAACTACGACTACTT TNTACGCCAAACCGTACATACCACGACTGCTGAACTACCAACGGTGTATTACCCGGATTG AAGGACGCATGAGGGAGGAGGAANAGGAGGATTGTAGGCGGACAGGGNTTGTACCAGAGG AGGAGTGACCTGCCGGGACAAACGGTTANGCCTTAAAAACGACGGATGGACNCAGTANTA AGCCAANCCTGGAACACGGTATTNCTTACACTACANTACAGAAAACGNTACCCCGGAAAA AGTTGCGAANCGGCGCGACTAGNGCGAAAACCCCGGCACACAAGGGGAAAGNCCANGGAC CCCCCANGAGGGCCCCCGGCCCCCGGGGCCTATAAGCGGCACCCCACACCAAACCGAATC CCAAGCNAACANACGGGGCGCTTAGGGGTANAAAACGACAGCAAGCACCCCNGCAAGACA TACAACGACAACACACGAANGGCCACACCGTAANGCNCTTTCCATCNNCACTNCCNCACC CCGGCAACCACACACCGCNANACNCCANACCCGCCTACAACNACACAAGGGCGAGAACCC AACCCGGCATNNCACCAGCCAACATAGTAAGCGACACNCAAAGTNAAATAGANGAN



consensusID : consensus_3828#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 846
fasta sequence
                              [TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTGGCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCCACCAACGGCGGTGACACGGGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTCGGGCGGATCGACCGAGTTCAAAACTGCCCACAACCAAACTACGCTTCTGGCGTACGGTGCCGATCAGAAGGGCGGCGGCGTCGGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGATTTTGCTTCGCTTCAACTCACCTACGATAGTGACGATTCTAACTCGACTCTTTCGCAACCGTCATCCACGCTGCTGAACTCCAACGGTGTATTCCCGGATGAGGACGATGAGGAGGAGGAAGAGGAGGATGTGGCGGCGGGTGTACAGGAGGAGGACGCGGACGAACGTAGCCTAAACGCGGTGGACAGTTTAGCCACCGACAGTTCTTCCTCGTCGAACGTCCCGAAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCACCACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGAAAGAGGCAATACATATATATTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCACGATTCACACAAATGTAACAAACAAATAACGAGATAAAACCACACAACAAGTATGAATTACTAGAATATAATGAGCGTTGGTTGAAACC]

[+] EMBL BX612685             [TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTGGCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCCACCAACGGCGGTGACACGGGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTCGGGCGGATCGACCGAGTTCAAAACTGCCCACAACCAAACTACGCTTCTGGCGTACGGTGCCGATCAGAAGGGCGGCGGCGTCGGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGATTTTGCTTCGCTTCAACTCACCTACGATAGTGACGATTCTAACTCGACTCTTTCGCAACCGTCATCCACGCTGCTGAACTCCAACGGTGTATTCCCGGATGAGGACGATGAGGAGGAGGAAGAGGAGGATGTGGCGGCGGGTGTACAGGAGGAGGACGCGGACGAACGTAGCCTAAACGCGGTGGACAGTTTAGCCACCGACAGTTCTTCCTCGTCGAACGTCCCGAAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCACCACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGAAAGAGGCAATACATATATATTT                                                                                                                           ]
[-] EMBL CNS08UDU             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CACCGACAGTTCTTCCTCGTCGAACGTCCCGAAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCACCACGATCAGCAGCGGGCTTGGTAGGTGACACCGGAATACGAAAGAGGCAATACATATATATTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCACGATTCACACAAATGTAACAAACAAATAACGAGATAAAACCACACAACAAGTATGAATTACTAGAATATAATGAGCGTTGGTTGAAACC]


>consensus_3828#1 TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTG GCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCC ACCAACGGCGGTGACACGGGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAG TACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGC GATGACACTATGTCGGGCGGATCGACCGAGTTCAAAACTGCCCACAACCAAACTACGCTT CTGGCGTACGGTGCCGATCAGAAGGGCGGCGGCGTCGGTTCGTTGCTAGACAGCGAGCCG GCAACTGAGCGTGATTTTGCTTCGCTTCAACTCACCTACGATAGTGACGATTCTAACTCG ACTCTTTCGCAACCGTCATCCACGCTGCTGAACTCCAACGGTGTATTCCCGGATGAGGAC GATGAGGAGGAGGAAGAGGAGGATGTGGCGGCGGGTGTACAGGAGGAGGACGCGGACGAA CGTAGCCTAAACGCGGTGGACAGTTTAGCCACCGACAGTTCTTCCTCGTCGAACGTCCCG AAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCAC CACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGAAAGAGGCAATACATATATA TTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCACGATTCACACAAATGTAACAAAC AAATAACGAGATAAAACCACACAACAAGTATGAATTACTAGAATATAATGAGCGTTGGTT GAAACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3828#0      ------------------------------------------------------------
consensus_3828#1      TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTG 60
                                                                                  

consensus_3828#0      ---------------------------GCAGAATCCCGNGGTTACGTACAGTCGCAG--C 31
consensus_3828#1      GCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCC 120
                                                  *   ** *       *************   *

consensus_3828#0      ACCAACGGNGGTTACACGGTGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCA 91
consensus_3828#1      ACCAACGGCGGTGACACGG-GCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCA 179
                      ******** *** ****** ****************************************

consensus_3828#0      GTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAG 151
consensus_3828#1      GTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAG 239
                      ************************************************************

consensus_3828#0      CGATGACACTATGTACNGGGCGGATATGACCTGACGTTCAAAACTGCC-ACAACCAAACG 210
consensus_3828#1      CGATGACACTATGT--CGGGCGGAT-CGACCGA--GTTCAAAACTGCCCACAACCAAACT 294
                      **************   ********  ****    ************* ********** 

consensus_3828#0      ACGCTTCTGGCGTACGGTGCCGATACAGCAAGTGGCGGCTGGCGTCGCGTTCGTTGCTAG 270
consensus_3828#1      ACGCTTCTGGCGTACGGTGCCGAT-CAGAAGG--GCGGC-GGCGTCG-GTTCGTTGCTAG 349
                      ************************ *** * *  ***** ******* ************

consensus_3828#0      ACAGCGAGCCGGCAACTGAGCGTGCATCTCTNTGCTTCGNCTATACAACTACACCTACGG 330
consensus_3828#1      ACAGCGAGCCGGCAACTGAGCGTG----ATTTTGCTTCGCTT---CAACT-CACCTACG- 400
                      ************************      * *******  *   ***** ******** 

consensus_3828#0      ATAGTTGACGATATCTAACTACGACTACTTTNTACGCCAAACCGTACATACCACGACTGC 390
consensus_3828#1      ATAGT-GACGAT-TCTAACT-CGACTCTTTCGCA------ACCGT-CAT-CCACG-CTGC 448
                      ***** ****** ******* *****  **   *      ***** *** ***** ****

consensus_3828#0      TGAACTACCAACGGTGTATTACCCGGATTGAAGGACGCATGAGGGAGGAGGAANAGGAGG 450
consensus_3828#1      TGAACT-CCAACGGTGTATT-CCCGGAT--GAGGACG-ATGAGG-AGGAGGAAGAGGAGG 502
                      ****** ************* *******   ****** ****** ******** ******

consensus_3828#0      ATTGTAGGCGGACAGGGNTTGTACCAGAGGAGGAGTGACCTGCCGGGACAAACGGTTANG 510
consensus_3828#1      AT-GTGG-----CGGCGGGTGTACAGGAGGAGGA--------CGCGGACGAACG----TA 544
                      ** ** *     * * *  *****  ********        *  **** ****      

consensus_3828#0      CCTTAAAAACGACGGATGGACNCAGTANTAAGCCAANCCTGGAACACGGTAT-TNCTTAC 569
consensus_3828#1      GCCTAAACGCGGTGGACAGTTTAGCCACCGA--CAGTTCTTCCTCGTCGAACGTCCCGAA 602
                       * ****  **  ***  *       *   *  **   **    *   * *  * *  * 

consensus_3828#0      ACTACANTACAGAAAACGNTACCCCGGAAAAAGTTGCGAANCGGCGCGACTAGNGCGAAA 629
consensus_3828#1      AGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCC---- 658
                      * * **                *  ****  **   *    * ** ** ****  *    

consensus_3828#0      ACCCCGGCACACAAGGGGAAAGNCCANGGACCCCCCANGAGGGCCCCCGGCCCCCGGGGC 689
consensus_3828#1      ACCACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGA---AAGAGGCAATACAT 715
                      *** **     *** ***   *      *** **  *  * *      *   *       

consensus_3828#0      CTATAAGCGGCACCCCACACCAAACCGAATCCCAAGCNAACANACGGGGCGCTTAGGGGT 749
consensus_3828#1      ATATATTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCAC--GATTCACACAAATGT 773
                       ****      *  **  * ***  * **   ** ** * **   *   * *  *   **

consensus_3828#0      ANAAAACGACAGCAAGCACCCCNGCAAGACATACAACGACAACACACGAANGGCCACACC 809
consensus_3828#1      AACAAA------CAAATAACGAGATAAAAC-CACA-CAACAA-GTATGAATTACTAGAAT 824
                      *  ***      ***  * *     ** **  *** * ****   * ***   * * *  

consensus_3828#0      GTAANGCNCTTTCCATCNNCACTNCCNCACCCCGGCAACCACACACCGCNANACNCCANA 869
consensus_3828#1      ATAATGAGCGTTG-GTTGAAACC------------------------------------- 846
                       *** *  * **   *    **                                      

consensus_3828#0      CCCGCCTACAACNACACAAGGGCGAGAACCCAACCCGGCATNNCACCAGCCAACATAGTA 929
consensus_3828#1      ------------------------------------------------------------
                                                                                  

consensus_3828#0      AGCGACACNCAAAGTNAAATAGANGAN 956
consensus_3828#1      ---------------------------
                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)