These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 956 fasta sequence [GCAGAATCCCGNGGTTACGTACAGTCGCAGCACCAACGGNGGTTACACGGTGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTACNGGGCGGATATGACCTGACGTTCAAAACTGCCACAACCAAACGACGCTTCTGGCGTACGGTGCCGATACAGCAAGTGGCGGCTGGCGTCGCGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGCATCTCTNTGCTTCGNCTATACAACTACACCTACGGATAGTTGACGATATCTAACTACGACTACTTTNTACGCCAAACCGTACATACCACGACTGCTGAACTACCAACGGTGTATTACCCGGATTGAAGGACGCATGAGGGAGGAGGAANAGGAGGATTGTAGGCGGACAGGGNTTGTACCAGAGGAGGAGTGACCTGCCGGGACAAACGGTTANGCCTTAAAAACGACGGATGGACNCAGTANTAAGCCAANCCTGGAACACGGTATTNCTTACACTACANTACAGAAAACGNTACCCCGGAAAAAGTTGCGAANCGGCGCGACTAGNGCGAAAACCCCGGCACACAAGGGGAAAGNCCANGGACCCCCCANGAGGGCCCCCGGCCCCCGGGGCCTATAAGCGGCACCCCACACCAAACCGAATCCCAAGCNAACANACGGGGCGCTTAGGGGTANAAAACGACAGCAAGCACCCCNGCAAGACATACAACGACAACACACGAANGGCCACACCGTAANGCNCTTTCCATCNNCACTNCCNCACCCCGGCAACCACACACCGCNANACNCCANACCCGCCTACAACNACACAAGGGCGAGAACCCAACCCGGCATNNCACCAGCCAACATAGTAAGCGACACNCAAAGTNAAATAGANGAN] [+] EMBL AL694599 [GCAGAATCCCGNGGTTACGTACAGTCGCAGCACCAACGGNGGTTACACGGTGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTACNGGGCGGATATGACCTGACGTTCAAAACTGCCACAACCAAACGACGCTTCTGGCGTACGGTGCCGATACAGCAAGTGGCGGCTGGCGTCGCGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGCATCTCTNTGCTTCGNCTATACAACTACACCTACGGATAGTTGACGATATCTAACTACGACTACTTTNTACGCCAAACCGTACATACCACGACTGCTGAACTACCAACGGTGTATTACCCGGATTGAAGGACGCATGAGGGAGGAGGAANAGGAGGATTGTAGGCGGACAGGGNTTGTACCAGAGGAGGAGTGACCTGCCGGGACAAACGGTTANGCCTTAAAAACGACGGATGGACNCAGTANTAAGCCAANCCTGGAACACGGTATTNCTTACACTACANTACAGAAAACGNTACCCCGGAAAAAGTTGCGAANCGGCGCGACTAGNGCGAAAACCCCGGCACACAAGGGGAAAGNCCANGGACCCCCCANGAGGGCCCCCGGCCCCCGGGGCCTATAAGCGGCACCCCACACCAAACCGAATCCCAAGCNAACANACGGGGCGCTTAGGGGTANAAAACGACAGCAAGCACCCCNGCAAGACATACAACGACAACACACGAANGGCCACACCGTAANGCNCTTTCCATCNNCACTNCCNCACCCCGGCAACCACACACCGCNANACNCCANACCCGCCTACAACNACACAAGGGCGAGAACCCAACCCGGCATNNCACCAGCCAACATAGTAAGCGACACNCAAAGTNAAATAGANGAN] consensusID : consensus_3828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 846 fasta sequence [TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTGGCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCCACCAACGGCGGTGACACGGGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTCGGGCGGATCGACCGAGTTCAAAACTGCCCACAACCAAACTACGCTTCTGGCGTACGGTGCCGATCAGAAGGGCGGCGGCGTCGGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGATTTTGCTTCGCTTCAACTCACCTACGATAGTGACGATTCTAACTCGACTCTTTCGCAACCGTCATCCACGCTGCTGAACTCCAACGGTGTATTCCCGGATGAGGACGATGAGGAGGAGGAAGAGGAGGATGTGGCGGCGGGTGTACAGGAGGAGGACGCGGACGAACGTAGCCTAAACGCGGTGGACAGTTTAGCCACCGACAGTTCTTCCTCGTCGAACGTCCCGAAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCACCACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGAAAGAGGCAATACATATATATTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCACGATTCACACAAATGTAACAAACAAATAACGAGATAAAACCACACAACAAGTATGAATTACTAGAATATAATGAGCGTTGGTTGAAACC] [+] EMBL BX612685 [TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTGGCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCCACCAACGGCGGTGACACGGGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCAGTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAGCGATGACACTATGTCGGGCGGATCGACCGAGTTCAAAACTGCCCACAACCAAACTACGCTTCTGGCGTACGGTGCCGATCAGAAGGGCGGCGGCGTCGGTTCGTTGCTAGACAGCGAGCCGGCAACTGAGCGTGATTTTGCTTCGCTTCAACTCACCTACGATAGTGACGATTCTAACTCGACTCTTTCGCAACCGTCATCCACGCTGCTGAACTCCAACGGTGTATTCCCGGATGAGGACGATGAGGAGGAGGAAGAGGAGGATGTGGCGGCGGGTGTACAGGAGGAGGACGCGGACGAACGTAGCCTAAACGCGGTGGACAGTTTAGCCACCGACAGTTCTTCCTCGTCGAACGTCCCGAAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCACCACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGAAAGAGGCAATACATATATATTT ] [-] EMBL CNS08UDU [ CACCGACAGTTCTTCCTCGTCGAACGTCCCGAAAGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCCACCACGATCAGCAGCGGGCTTGGTAGGTGACACCGGAATACGAAAGAGGCAATACATATATATTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCACGATTCACACAAATGTAACAAACAAATAACGAGATAAAACCACACAACAAGTATGAATTACTAGAATATAATGAGCGTTGGTTGAAACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3828#0 ------------------------------------------------------------ consensus_3828#1 TCATACACGAGCAACTCGAACAACTCATACACCAACGGCAGCCGCGCGTACAGCGGCCTG 60 consensus_3828#0 ---------------------------GCAGAATCCCGNGGTTACGTACAGTCGCAG--C 31 consensus_3828#1 GCCAATACCGATAATCCCGCAACATCGACGCGATTCTACTCCAACGTACAGTCGCAAGCC 120 * ** * ************* * consensus_3828#0 ACCAACGGNGGTTACACGGTGCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCA 91 consensus_3828#1 ACCAACGGCGGTGACACGG-GCACTACTATGACGGGCGGTTCGCCCTACACAACGACGCA 179 ******** *** ****** **************************************** consensus_3828#0 GTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAG 151 consensus_3828#1 GTACAAATCCATTCTACAACAACCAGTACAACCGACGGATGGTCGATGGGTGCCGGGAAG 239 ************************************************************ consensus_3828#0 CGATGACACTATGTACNGGGCGGATATGACCTGACGTTCAAAACTGCC-ACAACCAAACG 210 consensus_3828#1 CGATGACACTATGT--CGGGCGGAT-CGACCGA--GTTCAAAACTGCCCACAACCAAACT 294 ************** ******** **** ************* ********** consensus_3828#0 ACGCTTCTGGCGTACGGTGCCGATACAGCAAGTGGCGGCTGGCGTCGCGTTCGTTGCTAG 270 consensus_3828#1 ACGCTTCTGGCGTACGGTGCCGAT-CAGAAGG--GCGGC-GGCGTCG-GTTCGTTGCTAG 349 ************************ *** * * ***** ******* ************ consensus_3828#0 ACAGCGAGCCGGCAACTGAGCGTGCATCTCTNTGCTTCGNCTATACAACTACACCTACGG 330 consensus_3828#1 ACAGCGAGCCGGCAACTGAGCGTG----ATTTTGCTTCGCTT---CAACT-CACCTACG- 400 ************************ * ******* * ***** ******** consensus_3828#0 ATAGTTGACGATATCTAACTACGACTACTTTNTACGCCAAACCGTACATACCACGACTGC 390 consensus_3828#1 ATAGT-GACGAT-TCTAACT-CGACTCTTTCGCA------ACCGT-CAT-CCACG-CTGC 448 ***** ****** ******* ***** ** * ***** *** ***** **** consensus_3828#0 TGAACTACCAACGGTGTATTACCCGGATTGAAGGACGCATGAGGGAGGAGGAANAGGAGG 450 consensus_3828#1 TGAACT-CCAACGGTGTATT-CCCGGAT--GAGGACG-ATGAGG-AGGAGGAAGAGGAGG 502 ****** ************* ******* ****** ****** ******** ****** consensus_3828#0 ATTGTAGGCGGACAGGGNTTGTACCAGAGGAGGAGTGACCTGCCGGGACAAACGGTTANG 510 consensus_3828#1 AT-GTGG-----CGGCGGGTGTACAGGAGGAGGA--------CGCGGACGAACG----TA 544 ** ** * * * * ***** ******** * **** **** consensus_3828#0 CCTTAAAAACGACGGATGGACNCAGTANTAAGCCAANCCTGGAACACGGTAT-TNCTTAC 569 consensus_3828#1 GCCTAAACGCGGTGGACAGTTTAGCCACCGA--CAGTTCTTCCTCGTCGAACGTCCCGAA 602 * **** ** *** * * * ** ** * * * * * * consensus_3828#0 ACTACANTACAGAAAACGNTACCCCGGAAAAAGTTGCGAANCGGCGCGACTAGNGCGAAA 629 consensus_3828#1 AGTGCAGCGGGATGGCGAACCGCAAGGAAGCAGCCCCAGCGCCGCCCGGCTAGGCC---- 658 * * ** * **** ** * * ** ** **** * consensus_3828#0 ACCCCGGCACACAAGGGGAAAGNCCANGGACCCCCCANGAGGGCCCCCGGCCCCCGGGGC 689 consensus_3828#1 ACCACGATCAGCAACGGGCTTGGTAGGCGACACCGAAATACGA---AAGAGGCAATACAT 715 *** ** *** *** * *** ** * * * * * consensus_3828#0 CTATAAGCGGCACCCCACACCAAACCGAATCCCAAGCNAACANACGGGGCGCTTAGGGGT 749 consensus_3828#1 ATATATTTTTGAAACCGAAGCAACGCTAACAACAGGCGACCAC--GATTCACACAAATGT 773 **** * ** * *** * ** ** ** * ** * * * * ** consensus_3828#0 ANAAAACGACAGCAAGCACCCCNGCAAGACATACAACGACAACACACGAANGGCCACACC 809 consensus_3828#1 AACAAA------CAAATAACGAGATAAAAC-CACA-CAACAA-GTATGAATTACTAGAAT 824 * *** *** * * ** ** *** * **** * *** * * * consensus_3828#0 GTAANGCNCTTTCCATCNNCACTNCCNCACCCCGGCAACCACACACCGCNANACNCCANA 869 consensus_3828#1 ATAATGAGCGTTG-GTTGAAACC------------------------------------- 846 *** * * ** * ** consensus_3828#0 CCCGCCTACAACNACACAAGGGCGAGAACCCAACCCGGCATNNCACCAGCCAACATAGTA 929 consensus_3828#1 ------------------------------------------------------------ consensus_3828#0 AGCGACACNCAAAGTNAAATAGANGAN 956 consensus_3828#1 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Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||