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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[CCGGCAGAAAGTTGAGCATCGCGTTAGTTTTACTTTTCTCGATGTGTACCACACACTAGAGCGGTGAACAGAAACGCTTCTGTGTGCGGCTGTTGCTTACATTTTCTCGTGTCACGGTGGAATTTCATTACTTGGAAGCTGGTTGTGTTGGGTGAACGCCGAGCGAACGGGAGCCGGGTCGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTGGCAGCGAAAAGAATATCAAACGCGTAAGCAAAGCAAAATAAGAGCAGCAGCAGCAGCAGCAGCACTCCATATTGAGGGTACGACTCTCGGGGTGCCATCCTGCATTGGCAGCAAAGCGGCGGTACACCGCGGTGTCACCCAAAGGGCGCCGGGTCAGCTCCGATTGCTGCGACGATTTAAAGCAATCTTTGGTACGACTTCGCCTCATCCTGGACGTCCACTTTACCGGGCATGTCGTCCGGAGGTGGTAAAAAGAAAGTAGTAGCAGCAGTAGCAGCAGCAGCAGCCGAAAACACCCCTTCCTCCGTGTCAATTGCAGCATCCGTCGCACCGCAAAGGCCTGCCGGTGGATTAAAATTGCTGATTGATAAGAACAGAATAGGCGTGCCGTCCACTAAAGCACAGTCTGCAGTGCAAAAACAGCAGCAACAACAGCAG]
[+] EMBL BM594962 [CCGGCAGAAAGTTGAGCATCGCGTTAGTTTTACTTTTCTCGATGTGTACCACACACTAGAGCGGTGAACAGAAACGCTTCTGTGTGCGGCTGTTGCTTACATTTTCTCGTGTCACGGTGGAATTTCATTACTTGGAAGCTGGTTGTGTTGGGTGAACGCCGAGCGAACGGGAGCCGGGTCGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTGGCAGCGAAAAGAATATCAAACGCGTAAGCAAAGCAAAATAAGAGCAGCAGCAGCAGCAGCAGCACTCCATATTGAGGGTACGACTCTCGGGGTGCCATCCTGCATTGGCAGCAAAGCGGCGGTACACCGCGGTGTCACCCAAAGGGCGCCGGGTCAGCTCCGATTGCTGCGACGATTTAAAGCAATCTTTGGTACGACTTCGCCTCATCCTGGACGTCCACTTTACCGGGCATGTCGTCCGGAGGTGGTAAAAAGAAAGTAGTAGCAGCAGTAGCAGCAGCAGCAGCCGAAAACACCCCTTCCTCCGTGTCAATTGCAGCATCCGTCGCACCGCAAAGGCCTGCCGGTGGATTAAAATTGCTGATTGATAAGAACAGAATAGGCGTGCCGTCCACTAAAGCACAGTCTGCAGTGCAAAAACAGCAGCAACAACAGCAG]
consensusID : consensus_3833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence
[CAGAATCCCACGATTANGAAACGCTTNTGTGTGCGGCTGTTGCTTACGTTATCTCGATGTCACGGTGGAATTTCATTACTTGAAAGCTGGTTGTGTTGGGTGAACGCCGANCGAACGGGAGCCGGGTCTGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTTGGCAGCGGAACACGGAATATCAAACGCGTAAGCCAAGCAAAATAAGNAGCATGTAGCAGCATGCAGCAGTCACTCCATATTGAGGGTACGACTCTCGGTGTGCCATCCTAGCGATTGGCCAGACAAAGCGGCGAGTAGCACCGCGAGTAGTCACCCAATAGGGCGCCGTGGTCTAGCTCCGATTGCTGCGACGATTTGAATAGCAATCTATATGGTACTACCTTCGGCCTTAATCCTGGACGTNCACTATTACCNGGGACATGTCAGTCCGGAGGTGGTAANCAGAAAGTAGTAGCAGCAGTAGCNATGCTAGCAGACAGCAGACAGCAGTCGAAAACACCCCTTCCTCCGATGTCAATTGCAGCATCCGTTCCGGCACCGGAAAGGCCTGCCGGTGGCATTAAGATTGCTGATTGATAAGCAACAGAATAGCGCGATGACCGTCCACTAAAGCACAGTCTGGCAGTGCAAAAACCAGT]
[+] EMBL AL694656 [CAGAATCCCACGATTANGAAACGCTTNTGTGTGCGGCTGTTGCTTACGTTATCTCGATGTCACGGTGGAATTTCATTACTTGAAAGCTGGTTGTGTTGGGTGAACGCCGANCGAACGGGAGCCGGGTCTGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTTGGCAGCGGAACACGGAATATCAAACGCGTAAGCCAAGCAAAATAAGNAGCATGTAGCAGCATGCAGCAGTCACTCCATATTGAGGGTACGACTCTCGGTGTGCCATCCTAGCGATTGGCCAGACAAAGCGGCGAGTAGCACCGCGAGTAGTCACCCAATAGGGCGCCGTGGTCTAGCTCCGATTGCTGCGACGATTTGAATAGCAATCTATATGGTACTACCTTCGGCCTTAATCCTGGACGTNCACTATTACCNGGGACATGTCAGTCCGGAGGTGGTAANCAGAAAGTAGTAGCAGCAGTAGCNATGCTAGCAGACAGCAGACAGCAGTCGAAAACACCCCTTCCTCCGATGTCAATTGCAGCATCCGTTCCGGCACCGGAAAGGCCTGCCGGTGGCATTAAGATTGCTGATTGATAAGCAACAGAATAGCGCGATGACCGTCCACTAAAGCACAGTCTGGCAGTGCAAAAACCAGT]
[+] EMBL BX622578 [ CACGGTGGAATTTNATTACTTGAAAGCTGGTTGTGTTGGGTGAACGCCNANCGAACGGGAGCCGGGTC GGNAGGATCATNCGGAAAGGATATCCGGTCCTTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3833#0 CCGGCAGAAAGTTGAGCATCGCGTTAGTTTTACTTTTCTCGATGTGTACCACACACTAGA 60
consensus_3833#1 ---------------------------------------------------CAGAATCCC 9
** * *
consensus_3833#0 GCGGTGAACAGAAACGCTTCTGTGTGCGGCTGTTGCTTACATTTTCTCG-TGTCACGGTG 119
consensus_3833#1 ACGATTAN--GAAACGCTTNTGTGTGCGGCTGTTGCTTACGTTATCTCGATGTCACGGTG 67
** * * ********* ******************** ** ***** **********
consensus_3833#0 GAATTTCATTACTTGGAAGCTGGTTGTGTTGGGTGAACGCCGAGCGAACGGGAGCCGGGT 179
consensus_3833#1 GAATTTCATTACTTGAAAGCTGGTTGTGTTGGGTGAACGCCGANCGAACGGGAGCCGGGT 127
*************** *************************** ****************
consensus_3833#0 C-GGCAGGATCATCCGGAAAGGATATCCGGTCCTTGT-GGCAGCGAAA---AGAATATCA 234
consensus_3833#1 CTGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTTGGCAGCGGAACACGGAATATCA 187
* *********************************** ******* ** ********
consensus_3833#0 AACGCGTAAGCAAAGCAAAATAAGA-GCA-GCAGCAGCA-GCAGCAG-CACTCCATATTG 290
consensus_3833#1 AACGCGTAAGCCAAGCAAAATAAGNAGCATGTAGCAGCATGCAGCAGTCACTCCATATTG 247
*********** ************ *** * ******* ******* ************
consensus_3833#0 AGGGTACGACTCTCGGGGTGCCATCCTGC--ATTGGC--AGCAAAGCGGCG-GTA-CACC 344
consensus_3833#1 AGGGTACGACTCTCGGTGTGCCATCCTAGCGATTGGCCAGACAAAGCGGCGAGTAGCACC 307
**************** ********** ****** ********** *** ****
consensus_3833#0 GCGGT--GTCACCCAA-AGGGCGCCG-GGTC-AGCTCCGATTGCTGCGACGATTTAAA-- 397
consensus_3833#1 GCGAGTAGTCACCCAATAGGGCGCCGTGGTCTAGCTCCGATTGCTGCGACGATTTGAATA 367
*** ********* ********* **** *********************** **
consensus_3833#0 GCAATCTTT--GGTACGAC-TTCG--CCTCATCCTGGACGTCCACT-TTACCGGG--CAT 449
consensus_3833#1 GCAATCTATATGGTACTACCTTCGGCCTTAATCCTGGACGTNCACTATTACCNGGGACAT 427
******* * ***** ** **** * * *********** **** ***** ** ***
consensus_3833#0 GTC-GTCCGGAGGTGGTAAAAAGAAAGTAGTAGCAGCAGTAGCA------GCAG------ 496
consensus_3833#1 GTCAGTCCGGAGGTGGTAANCAGAAAGTAGTAGCAGCAGTAGCNATGCTAGCAGACAGCA 487
*** *************** ********************** ****
consensus_3833#0 --CAGCAGCCGAAAACACCCCTTCCTCCG-TGTCAATTGCAGCATCCGTC---GCACCGC 550
consensus_3833#1 GACAGCAGTCGAAAACACCCCTTCCTCCGATGTCAATTGCAGCATCCGTTCCGGCACCGG 547
****** ******************** ******************* ******
consensus_3833#0 AAAGGCCTGCCGGTGG-ATTAAAATTGCTGATTGATAAG-AACAGAATAG-GCGT--GCC 605
consensus_3833#1 AAAGGCCTGCCGGTGGCATTAAGATTGCTGATTGATAAGCAACAGAATAGCGCGATGACC 607
**************** ***** **************** ********** *** **
consensus_3833#0 GTCCACTAAAGCACAGTCTG-CAGTGCAAAAACAGCAGCAACAACAGCAG 654
consensus_3833#1 GTCCACTAAAGCACAGTCTGGCAGTGCAAAAAC--CAGT----------- 644
******************** ************ ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||