These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CCGGCAGAAAGTTGAGCATCGCGTTAGTTTTACTTTTCTCGATGTGTACCACACACTAGAGCGGTGAACAGAAACGCTTCTGTGTGCGGCTGTTGCTTACATTTTCTCGTGTCACGGTGGAATTTCATTACTTGGAAGCTGGTTGTGTTGGGTGAACGCCGAGCGAACGGGAGCCGGGTCGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTGGCAGCGAAAAGAATATCAAACGCGTAAGCAAAGCAAAATAAGAGCAGCAGCAGCAGCAGCAGCACTCCATATTGAGGGTACGACTCTCGGGGTGCCATCCTGCATTGGCAGCAAAGCGGCGGTACACCGCGGTGTCACCCAAAGGGCGCCGGGTCAGCTCCGATTGCTGCGACGATTTAAAGCAATCTTTGGTACGACTTCGCCTCATCCTGGACGTCCACTTTACCGGGCATGTCGTCCGGAGGTGGTAAAAAGAAAGTAGTAGCAGCAGTAGCAGCAGCAGCAGCCGAAAACACCCCTTCCTCCGTGTCAATTGCAGCATCCGTCGCACCGCAAAGGCCTGCCGGTGGATTAAAATTGCTGATTGATAAGAACAGAATAGGCGTGCCGTCCACTAAAGCACAGTCTGCAGTGCAAAAACAGCAGCAACAACAGCAG] [+] EMBL BM594962 [CCGGCAGAAAGTTGAGCATCGCGTTAGTTTTACTTTTCTCGATGTGTACCACACACTAGAGCGGTGAACAGAAACGCTTCTGTGTGCGGCTGTTGCTTACATTTTCTCGTGTCACGGTGGAATTTCATTACTTGGAAGCTGGTTGTGTTGGGTGAACGCCGAGCGAACGGGAGCCGGGTCGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTGGCAGCGAAAAGAATATCAAACGCGTAAGCAAAGCAAAATAAGAGCAGCAGCAGCAGCAGCAGCACTCCATATTGAGGGTACGACTCTCGGGGTGCCATCCTGCATTGGCAGCAAAGCGGCGGTACACCGCGGTGTCACCCAAAGGGCGCCGGGTCAGCTCCGATTGCTGCGACGATTTAAAGCAATCTTTGGTACGACTTCGCCTCATCCTGGACGTCCACTTTACCGGGCATGTCGTCCGGAGGTGGTAAAAAGAAAGTAGTAGCAGCAGTAGCAGCAGCAGCAGCCGAAAACACCCCTTCCTCCGTGTCAATTGCAGCATCCGTCGCACCGCAAAGGCCTGCCGGTGGATTAAAATTGCTGATTGATAAGAACAGAATAGGCGTGCCGTCCACTAAAGCACAGTCTGCAGTGCAAAAACAGCAGCAACAACAGCAG] consensusID : consensus_3833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence [CAGAATCCCACGATTANGAAACGCTTNTGTGTGCGGCTGTTGCTTACGTTATCTCGATGTCACGGTGGAATTTCATTACTTGAAAGCTGGTTGTGTTGGGTGAACGCCGANCGAACGGGAGCCGGGTCTGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTTGGCAGCGGAACACGGAATATCAAACGCGTAAGCCAAGCAAAATAAGNAGCATGTAGCAGCATGCAGCAGTCACTCCATATTGAGGGTACGACTCTCGGTGTGCCATCCTAGCGATTGGCCAGACAAAGCGGCGAGTAGCACCGCGAGTAGTCACCCAATAGGGCGCCGTGGTCTAGCTCCGATTGCTGCGACGATTTGAATAGCAATCTATATGGTACTACCTTCGGCCTTAATCCTGGACGTNCACTATTACCNGGGACATGTCAGTCCGGAGGTGGTAANCAGAAAGTAGTAGCAGCAGTAGCNATGCTAGCAGACAGCAGACAGCAGTCGAAAACACCCCTTCCTCCGATGTCAATTGCAGCATCCGTTCCGGCACCGGAAAGGCCTGCCGGTGGCATTAAGATTGCTGATTGATAAGCAACAGAATAGCGCGATGACCGTCCACTAAAGCACAGTCTGGCAGTGCAAAAACCAGT] [+] EMBL AL694656 [CAGAATCCCACGATTANGAAACGCTTNTGTGTGCGGCTGTTGCTTACGTTATCTCGATGTCACGGTGGAATTTCATTACTTGAAAGCTGGTTGTGTTGGGTGAACGCCGANCGAACGGGAGCCGGGTCTGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTTGGCAGCGGAACACGGAATATCAAACGCGTAAGCCAAGCAAAATAAGNAGCATGTAGCAGCATGCAGCAGTCACTCCATATTGAGGGTACGACTCTCGGTGTGCCATCCTAGCGATTGGCCAGACAAAGCGGCGAGTAGCACCGCGAGTAGTCACCCAATAGGGCGCCGTGGTCTAGCTCCGATTGCTGCGACGATTTGAATAGCAATCTATATGGTACTACCTTCGGCCTTAATCCTGGACGTNCACTATTACCNGGGACATGTCAGTCCGGAGGTGGTAANCAGAAAGTAGTAGCAGCAGTAGCNATGCTAGCAGACAGCAGACAGCAGTCGAAAACACCCCTTCCTCCGATGTCAATTGCAGCATCCGTTCCGGCACCGGAAAGGCCTGCCGGTGGCATTAAGATTGCTGATTGATAAGCAACAGAATAGCGCGATGACCGTCCACTAAAGCACAGTCTGGCAGTGCAAAAACCAGT] [+] EMBL BX622578 [ CACGGTGGAATTTNATTACTTGAAAGCTGGTTGTGTTGGGTGAACGCCNANCGAACGGGAGCCGGGTC GGNAGGATCATNCGGAAAGGATATCCGGTCCTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3833#0 CCGGCAGAAAGTTGAGCATCGCGTTAGTTTTACTTTTCTCGATGTGTACCACACACTAGA 60 consensus_3833#1 ---------------------------------------------------CAGAATCCC 9 ** * * consensus_3833#0 GCGGTGAACAGAAACGCTTCTGTGTGCGGCTGTTGCTTACATTTTCTCG-TGTCACGGTG 119 consensus_3833#1 ACGATTAN--GAAACGCTTNTGTGTGCGGCTGTTGCTTACGTTATCTCGATGTCACGGTG 67 ** * * ********* ******************** ** ***** ********** consensus_3833#0 GAATTTCATTACTTGGAAGCTGGTTGTGTTGGGTGAACGCCGAGCGAACGGGAGCCGGGT 179 consensus_3833#1 GAATTTCATTACTTGAAAGCTGGTTGTGTTGGGTGAACGCCGANCGAACGGGAGCCGGGT 127 *************** *************************** **************** consensus_3833#0 C-GGCAGGATCATCCGGAAAGGATATCCGGTCCTTGT-GGCAGCGAAA---AGAATATCA 234 consensus_3833#1 CTGGCAGGATCATCCGGAAAGGATATCCGGTCCTTGTTGGCAGCGGAACACGGAATATCA 187 * *********************************** ******* ** ******** consensus_3833#0 AACGCGTAAGCAAAGCAAAATAAGA-GCA-GCAGCAGCA-GCAGCAG-CACTCCATATTG 290 consensus_3833#1 AACGCGTAAGCCAAGCAAAATAAGNAGCATGTAGCAGCATGCAGCAGTCACTCCATATTG 247 *********** ************ *** * ******* ******* ************ consensus_3833#0 AGGGTACGACTCTCGGGGTGCCATCCTGC--ATTGGC--AGCAAAGCGGCG-GTA-CACC 344 consensus_3833#1 AGGGTACGACTCTCGGTGTGCCATCCTAGCGATTGGCCAGACAAAGCGGCGAGTAGCACC 307 **************** ********** ****** ********** *** **** consensus_3833#0 GCGGT--GTCACCCAA-AGGGCGCCG-GGTC-AGCTCCGATTGCTGCGACGATTTAAA-- 397 consensus_3833#1 GCGAGTAGTCACCCAATAGGGCGCCGTGGTCTAGCTCCGATTGCTGCGACGATTTGAATA 367 *** ********* ********* **** *********************** ** consensus_3833#0 GCAATCTTT--GGTACGAC-TTCG--CCTCATCCTGGACGTCCACT-TTACCGGG--CAT 449 consensus_3833#1 GCAATCTATATGGTACTACCTTCGGCCTTAATCCTGGACGTNCACTATTACCNGGGACAT 427 ******* * ***** ** **** * * *********** **** ***** ** *** consensus_3833#0 GTC-GTCCGGAGGTGGTAAAAAGAAAGTAGTAGCAGCAGTAGCA------GCAG------ 496 consensus_3833#1 GTCAGTCCGGAGGTGGTAANCAGAAAGTAGTAGCAGCAGTAGCNATGCTAGCAGACAGCA 487 *** *************** ********************** **** consensus_3833#0 --CAGCAGCCGAAAACACCCCTTCCTCCG-TGTCAATTGCAGCATCCGTC---GCACCGC 550 consensus_3833#1 GACAGCAGTCGAAAACACCCCTTCCTCCGATGTCAATTGCAGCATCCGTTCCGGCACCGG 547 ****** ******************** ******************* ****** consensus_3833#0 AAAGGCCTGCCGGTGG-ATTAAAATTGCTGATTGATAAG-AACAGAATAG-GCGT--GCC 605 consensus_3833#1 AAAGGCCTGCCGGTGGCATTAAGATTGCTGATTGATAAGCAACAGAATAGCGCGATGACC 607 **************** ***** **************** ********** *** ** consensus_3833#0 GTCCACTAAAGCACAGTCTG-CAGTGCAAAAACAGCAGCAACAACAGCAG 654 consensus_3833#1 GTCCACTAAAGCACAGTCTGGCAGTGCAAAAAC--CAGT----------- 644 ******************** ************ *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||