cluster # 3834

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Anopheles gambiae
cluster # 3834 cluster # 3834 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3834#0 length = 533 sequences # 1

consensus_3834#1 length = 500 sequences # 1
consensus_3834#2 length = 454 sequences # 1

consensusID : consensus_3834#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [CGAGGTTATNGACGAAGGACGTTTTTAATTAATTTATTAACCTGCCAGGATCAGGTCAGGTGTGCGCCCTTTGGGTTCTTTGTTCTTTGTGAACGAGATATTTATTGTGAGCTCTAACATGATCCTTTCTTTTCAATTTTTTGTCTTGTTGTTTGCTCCACTTTACACAACGTCCCCCCCACAAAACATCCCACACTCAAACCTCCGGACCGCAATCTCTCTTCCAGTTGTTTTTCCGTCGTACGCCCGTTAGCAGCCGTCGCCGCCGCCGCCCCGACTCCGGACCAGAGTGGCTCGTGGGATGGCGCCTGTTAGGGTGGGCAACCGGGTGTCCACTTATGTATTGATTGGTGGTNNATNGTGCGTGGTCCAAGTTAGCATTGAACTTGCACCCACCTCGGCCTAAAGAAGTTTTCACTTGCCAGGTGACCTTAACCGGCCTTGCTCAGCCGTCTTGCCAGTATAGGGTATGCTAGATATCCTCGGGAGCTCAAACCTCATCTAATTGAGGCATCTTTCACAGCTTCCAGCTG]

[+] EMBL AL694663             [CGAGGTTATNGACGAAGGACGTTTTTAATTAATTTATTAACCTGCCAGGATCAGGTCAGGTGTGCGCCCTTTGGGTTCTTTGTTCTTTGTGAACGAGATATTTATTGTGAGCTCTAACATGATCCTTTCTTTTCAATTTTTTGTCTTGTTGTTTGCTCCACTTTACACAACGTCCCCCCCACAAAACATCCCACACTCAAACCTCCGGACCGCAATCTCTCTTCCAGTTGTTTTTCCGTCGTACGCCCGTTAGCAGCCGTCGCCGCCGCCGCCCCGACTCCGGACCAGAGTGGCTCGTGGGATGGCGCCTGTTAGGGTGGGCAACCGGGTGTCCACTTATGTATTGATTGGTGGTNNATNGTGCGTGGTCCAAGTTAGCATTGAACTTGCACCCACCTCGGCCTAAAGAAGTTTTCACTTGCCAGGTGACCTTAACCGGCCTTGCTCAGCCGTCTTGCCAGTATAGGGTATGCTAGATATCCTCGGGAGCTCAAACCTCATCTAATTGAGGCATCTTTCACAGCTTCCAGCTG]




>consensus_3834#0
CGAGGTTATNGACGAAGGACGTTTTTAATTAATTTATTAACCTGCCAGGATCAGGTCAGG
TGTGCGCCCTTTGGGTTCTTTGTTCTTTGTGAACGAGATATTTATTGTGAGCTCTAACAT
GATCCTTTCTTTTCAATTTTTTGTCTTGTTGTTTGCTCCACTTTACACAACGTCCCCCCC
ACAAAACATCCCACACTCAAACCTCCGGACCGCAATCTCTCTTCCAGTTGTTTTTCCGTC
GTACGCCCGTTAGCAGCCGTCGCCGCCGCCGCCCCGACTCCGGACCAGAGTGGCTCGTGG
GATGGCGCCTGTTAGGGTGGGCAACCGGGTGTCCACTTATGTATTGATTGGTGGTNNATN
GTGCGTGGTCCAAGTTAGCATTGAACTTGCACCCACCTCGGCCTAAAGAAGTTTTCACTT
GCCAGGTGACCTTAACCGGCCTTGCTCAGCCGTCTTGCCAGTATAGGGTATGCTAGATAT
CCTCGGGAGCTCAAACCTCATCTAATTGAGGCATCTTTCACAGCTTCCAGCTG

consensusID : consensus_3834#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 500
fasta sequence

                              [AGAATCCCCCGAGGTTNTGCGGGCACGCCGCGGAACGGGAGTGCCCAGAGCGAGCCTAGATTAATTTAATTTATTTATGCAAAACAACCCCCCCTCACACACACGCTCGCTCGTAGCCGGCCCTCCCTTCTTTCCGGGGCGTGTCCCGTTGCAGTCCCGTGCGCAAACACAAACAATTTCTAACTCCCGCCGCCCGCCTCTGCACACCGGCTAGCGCTCCCCTGGACGCACTAGCAAGCGTGGACGAAGGACGTATTCTAAATTAATTTATTAACCGCCAGGATCAGGTCAGGCTGTGCGCCCTTAGGGTTCTATNAGTTCTATTGTGAACGAGATATTTATAGTGAGCTCTAACATGATCCTTTCTATTTCCACAGTATGTACTACATATATANATCGGGTNTCTCAGGTCACNTAGGGTTACAGTAGGGCTTACCCAAACATATTACTATTACCCAAACAAAAAGCCGGTTTCCCCNCNCNNNCGCACCACCCACCCC]

[+] EMBL AL930996             [AGAATCCCCCGAGGTTNTGCGGGCACGCCGCGGAACGGGAGTGCCCAGAGCGAGCCTAGATTAATTTAATTTATTTATGCAAAACAACCCCCCCTCACACACACGCTCGCTCGTAGCCGGCCCTCCCTTCTTTCCGGGGCGTGTCCCGTTGCAGTCCCGTGCGCAAACACAAACAATTTCTAACTCCCGCCGCCCGCCTCTGCACACCGGCTAGCGCTCCCCTGGACGCACTAGCAAGCGTGGACGAAGGACGTATTCTAAATTAATTTATTAACCGCCAGGATCAGGTCAGGCTGTGCGCCCTTAGGGTTCTATNAGTTCTATTGTGAACGAGATATTTATAGTGAGCTCTAACATGATCCTTTCTATTTCCACAGTATGTACTACATATATANATCGGGTNTCTCAGGTCACNTAGGGTTACAGTAGGGCTTACCCAAACATATTACTATTACCCAAACAAAAAGCCGGTTTCCCCNCNCNNNCGCACCACCCACCCC]




>consensus_3834#1
AGAATCCCCCGAGGTTNTGCGGGCACGCCGCGGAACGGGAGTGCCCAGAGCGAGCCTAGA
TTAATTTAATTTATTTATGCAAAACAACCCCCCCTCACACACACGCTCGCTCGTAGCCGG
CCCTCCCTTCTTTCCGGGGCGTGTCCCGTTGCAGTCCCGTGCGCAAACACAAACAATTTC
TAACTCCCGCCGCCCGCCTCTGCACACCGGCTAGCGCTCCCCTGGACGCACTAGCAAGCG
TGGACGAAGGACGTATTCTAAATTAATTTATTAACCGCCAGGATCAGGTCAGGCTGTGCG
CCCTTAGGGTTCTATNAGTTCTATTGTGAACGAGATATTTATAGTGAGCTCTAACATGAT
CCTTTCTATTTCCACAGTATGTACTACATATATANATCGGGTNTCTCAGGTCACNTAGGG
TTACAGTAGGGCTTACCCAAACATATTACTATTACCCAAACAAAAAGCCGGTTTCCCCNC
NCNNNCGCACCACCCACCCC

consensusID : consensus_3834#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [GAATGCCCGAGGTTNTTTCAATTTTTTTGTTTGTTTGTTTGCTCCACTTTACACAACGTCCCCCCCACAAACACATCCCCACACTCAAACCCTCCGACCCGCCAATCTCTCTTCCAGTTGTTTTTTCCGTCGTACGCCCGTTAGCAGCCGTCGCCGCGCGGCCCGACTCCGGCAGAGTGGCTCGTGGGATGGCGCCTGTTAAGGGGTGGGCAACCCGGGTGGTCCACTNTTGCTTNGAATTCGGGNGCGGTNCATATCATAGGTTGGCCGGTGGCTCCCACACGCTTTAGGCCACTTGGAAACCTTTGGCACGCCCCACNTTCGGCNCCAAGAGGAAACGGGTTTTTTCCACCTTGGCGCAGGGGGTGGAACCCTTTTAAACCCGGGGNCCCTTTGGCNTTCGGCAGCCGGCGTCCTTTGGCCCCGAGAATGAGGNGAGATTTAGCCTTCTGGA]

[+] EMBL AL695454             [GAATGCCCGAGGTTNTTTCAATTTTTTTGTTTGTTTGTTTGCTCCACTTTACACAACGTCCCCCCCACAAACACATCCCCACACTCAAACCCTCCGACCCGCCAATCTCTCTTCCAGTTGTTTTTTCCGTCGTACGCCCGTTAGCAGCCGTCGCCGCGCGGCCCGACTCCGGCAGAGTGGCTCGTGGGATGGCGCCTGTTAAGGGGTGGGCAACCCGGGTGGTCCACTNTTGCTTNGAATTCGGGNGCGGTNCATATCATAGGTTGGCCGGTGGCTCCCACACGCTTTAGGCCACTTGGAAACCTTTGGCACGCCCCACNTTCGGCNCCAAGAGGAAACGGGTTTTTTCCACCTTGGCGCAGGGGGTGGAACCCTTTTAAACCCGGGGNCCCTTTGGCNTTCGGCAGCCGGCGTCCTTTGGCCCCGAGAATGAGGNGAGATTTAGCCTTCTGGA]




>consensus_3834#2
GAATGCCCGAGGTTNTTTCAATTTTTTTGTTTGTTTGTTTGCTCCACTTTACACAACGTC
CCCCCCACAAACACATCCCCACACTCAAACCCTCCGACCCGCCAATCTCTCTTCCAGTTG
TTTTTTCCGTCGTACGCCCGTTAGCAGCCGTCGCCGCGCGGCCCGACTCCGGCAGAGTGG
CTCGTGGGATGGCGCCTGTTAAGGGGTGGGCAACCCGGGTGGTCCACTNTTGCTTNGAAT
TCGGGNGCGGTNCATATCATAGGTTGGCCGGTGGCTCCCACACGCTTTAGGCCACTTGGA
AACCTTTGGCACGCCCCACNTTCGGCNCCAAGAGGAAACGGGTTTTTTCCACCTTGGCGC
AGGGGGTGGAACCCTTTTAAACCCGGGGNCCCTTTGGCNTTCGGCAGCCGGCGTCCTTTG
GCCCCGAGAATGAGGNGAGATTTAGCCTTCTGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3834#0      CGAGGTTATNGACGAAGGACGTTTTTAATTAATTTATTAACCTGCCAGGATCAGGTCAGG 60
consensus_3834#2      ------------------------------------------------------------
consensus_3834#1      --------------AGAATCCCCCGAGGTTNTGCGGGCACGCCGCGGAACGGGAGTGCCC 46
                                                                                  

consensus_3834#0      TGTGCGCCCTTTGGGTTCTTTGTTCTTTGTGAACGAGATATTTATTGTGAGCTCTAACAT 120
consensus_3834#2      ------------------------------------------------------GAATGC 6
consensus_3834#1      AGAGCGAGCCTAGATTAATTTAATTTATTTATGCAAAACAACCCCCCCTCACACACACGC 106
                                                                              *   

consensus_3834#0      GATCCTTTCTTTTCAATTTTTTGTCTTGTTGTTTGCTCCACTTTACACAACGTCCCCCCC 180
consensus_3834#2      CCGAGGTTNTTTCAATTTTTTTGTTTGTTTGTTTGCTCCACTTTACACAACGTCCCCCCC 66
consensus_3834#1      TCGCTCGTAGCCGGCCCTCCCTTCTTTCCGGGGCGTGTCCCGTTGCA----GTCCCGTGC 162
                             *         *   *   *    *   *   * * ** **    *****   *

consensus_3834#0      ACAAA-ACATCCC-ACACTCAAACCTCCGGACCG--CAATCTCTCTTCCAGTTGTTTTT- 235
consensus_3834#2      ACAAACACATCCCCACACTCAAACCCTCCGACCCGCCAATCTCTCTTCCAGTTGTTTTTT 126
consensus_3834#1      GCAAACACAAACAATTTCTAACTCCCGCCGCCCG---CCTCTGCACACCGGCTAGCGCT- 218
                       **** ***  *     ** *  **  * * **      ***     ** * *     * 

consensus_3834#0      CCGTCGTACGCCCGTTAGCAGCCGTCGCCGCCGCCGCCCCGACTCCGGACCAGAGTGGCT 295
consensus_3834#2      CCGTCGTACGCCCGTTAGCAGCCGTCGCCGC--GCGGCCCGACTCCGG--CAGAGTGGCT 182
consensus_3834#1      CCCCTGGACGCAC--TAGCAAGCGTGGACGA---AGGACGTATTCTAAATTA-ATTTATT 272
                      **   * **** *  *****  *** * **     *  *  * **      * * *   *

consensus_3834#0      CGTGGGATGGCGCCTGTTA--GGGTGGGCAACC-GGGTG-T-CCACTTATGTATTGATTG 350
consensus_3834#2      CGTGGGATGGCGCCTGTTAAGGGGTGGGCAACCCGGGTGGT-CCACTNTTGCTTNGAAT- 240
consensus_3834#1      AACCGCCAGGATCAGGTCAGGCTGTGCGCCCTTAGGGTTCTATNAGTTCTATTGTGAACG 332
                          *   **  *  ** *    *** **     ****  *   * *  *     **   

consensus_3834#0      GTGGTNNATNGTGCGTGGTCCAAGTTAGCATTGAACTTGCACCCACCTCGGCCTA---AA 407
consensus_3834#2      -TCGGGNGCGGTNCATATCATAGGTTGGCCGGTGGCTCCCACACGCTTTAGGCCACTTGG 299
consensus_3834#1      -AGATATTTATAGTGAGCTCTAACATGATCCTTTCTATTTCCACAGTATGTACTACATAT 391
                                           *   *               * *        * *     

consensus_3834#0      GAAGTTTTCACTTGCCAGGTGACCTTAACCGGCCTTGCTCAGCCGTCTTGCCAGTATAGG 467
consensus_3834#2      AAACCTTTGGCACGCCCCACNTTCGGCNCCAAGAGGAAACGGGT-TTTTTCCACCTTGGC 358
consensus_3834#1      ATANATCGGGTNTCTCAGGTCACNTAGGGTTACAGTA---GGGC-TTACCCAAACATATT 447
                        *  *         *                         *   *    * *   *   

consensus_3834#0      GTATGC--TAGATATCCTCGGGAGCTCAAACCTCATCTAATTGAGGCATCTTTCACAGCT 525
consensus_3834#2      GCAGGGGGTGGAACCCTTTTAAACCCGGGGNCCCTTTGGCNTTCGGCAGCCGGCGTCCTT 418
consensus_3834#1      AC------TATTACCCAAACAAAAAGCCGGTTTCCCCNCNCNNNCGCACCACCCACCCC- 500
                              *      *      *          *           *** *   *      

consensus_3834#0      TCCAGCTG---------------------------- 533
consensus_3834#2      TGGCCCCGAGAATGAGGNGAGATTTAGCCTTCTGGA 454
consensus_3834#1      ------------------------------------