These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1129 fasta sequence [CCCCCGAGGTTTAAGGTGTTGTTTTGATCGGTATCAGCGCGGAGGAAAGGAAAATAAATAAAATTTTTGCAATACATTCCTCTGCTGTATCGTGCGAAATTATTCCACGCTTTTGCAGGCTTTATTGTGAATCAAATCAAACATTTACTATTTTTGTGATTTTGTGCGTGAGTAGAAATATTGTTGGACAAAAATGTCCCCAAGTGCGGAATTCCCTTGTTTAGATAAGAGAGCGTACGCAGTGTGTTCCCCCGACAAGCTTCCCCTAAAAATGCTAGCCTCATTGGATGCGGGCAAAAGTTAGCGCTGAGTAAGGCTGTTATCAATAGCTACGCAATCTCAATACATTGGATATCGGAAAGTCACCCCCGAAAACTAAAGACACCTGCGAAAAAGAGGCAACCGACAACATATACGGCCAATTGGTGTACGCTTGGTATTGATAAGGGAGTAGTCCCTCGGCTGATTACGAAATAATATTACTCAGTACAGCCCAGCGGAAAGCCTAATCGTGGCGATCGTGATTCACGGCAGTTTACGTTCAGATATTCAACCGTAGTGTTGACGCTGAGTGAAATCGTGCACGGTGAAGCACTGCAGCAACAATGTTTCGTAAAATATGGAAATCCATTTCCTCCTTTTATCTGCTGTACGAACTCAACACCTGCATATACATGCTGGATCCTTGGGAAAAGCGCTTTGTCAATGCGTTCATATTTGCCATTTTAGGGCTGCTGATCTTCTCGAGCTACACGTTCCTGCCGGGATACACGCGGAAATTGGTTAACGCATTCCTTCCTGCCCATTCCGCCCTGTCCGATCTCGACATGGACCATCAGCGATCGATGGAGTTCAACATACACTGACGATAGAGGGGTTGTGATGCCATCGGAGGACCCTTTGTGATACCGCAAATCAAGGGCCAATGGAGGGAACATTGAACGCACCGACGAACCTTGCCAATGTGCAGAGCACAAACAATCGGAGCACCGCTAACTAGACAAGCTTAACTCTAATGTTACAAACAAATTCGATACAATTGTAGTCAGAAGCTGTGTTAATTTTGGTTTGAATGCCCTTACTTTCGATTGCTTTTGAGCGTTAGTTAGAAATAGTGATGCAAAATCTT] [+] EMBL AL694703 [CCCCCGAGGTTTAAGGTGTTGTTTTGATCGGTATCAGCGCGGAGGAAAGGAAAATAAATAAAATTTTTGCAATACATTCCTCTGCTGTATCGTGCGAAATTATTCCACGCTTTTGCAGGCTTTATTGTGAATCAAATCAAACATTTACTATTTTTGTGATTTTGTGCGTGAGTAGAAATATTGTTGGACAAAAATGTCCCCAAGTGCGGAATTCCCTTGTTTAGATAAGAGAGCGTACGCAGTGTGTTCCCCCGACAAGCTTCCCCTAAAAATGCTAGCCTCATTGGATGCGGGCAAAAGTTAGCGCTGAGTAAGGCTGTTATCAATAGCTACGCAATCTCAATACATTGGATATCGGAAAGTCACCCCCGAAAACTAAAGACACCTGCGAAAAAGAGGCAACCGACAACATATACGGCCAATTGGTGTACGCTTGGTATTGATAAGGGAGTAGTCCCTCGGCTGATTACGAAATAATATTACTCAGTACAGCCCAGCGGAAAGCCTAATCGTGGCGATCG ] [+] EMBL BX608526 [ TTACGAAATAATATTACTCAGTACAGCCCAGCGGAAAGCCTAATCGTGGCGATCGTGATTCACGGCAGTTTACGTTCAGATATTCAACCGTAGTGTTGACGCTGAGTGAAATCGTGCACGGTGAAGCACTGCAGCAACAATGTTTCGTAAAATATGGAAATCCATTTCCTCCTTTTATCTGCTGTACGAACTCAACACCTGCATATACATGCTGGATCCTTGGGAAAAGCGCTTTGTCAATGCGTTCATATTTGCCATTTTAGGGCTGCTGATCTTCTCGAGCTACACGTTCCTGCCGGGATACACGCGGAAATTGGTTAACGCATTCCTTCCTGCCCATTCCGCCCTGTCCGATCTCGACATGGACCATCAGCGATCGATGGAGTTCAACATACACTGACGATAGAGGGGTTGTGATGCCATCGGAGGACCCTTTGTGATACCGCAAATCAAGGGCCAATGGAGGGAACATTGAACGCACCGACGAACCTTGCCAATGTGCAGAGCACAAACAATCGGAGCACCGCTAACTAGACAAGCTTAACTCTAATGTTACAAACAAATTCGATACAATTGTAGTCAGAAGCTGTGTTAATTTTGGTTTGAATGCCCTTACTTTCGATTGCTTTTGAGCGTTAGTTAGAAATAGTGATGCAAAATCTT] consensusID : consensus_3837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 453 fasta sequence [AGATCCCCGAGGTAAAATCTTTGCATACATTCCTGGTGCTGTATCGTGCGAAATTATTCCACGCTTTTGCAGGCTTTCTTGTGAATCAAATCAAACATTTACTATTTTTGTGATTTTGTGCGTGAGTAAAAATGTTGTTGGACAAAAATGTCCCCAATTGCGGAATTCCCTTTGTTTAGATAAGAGAGCGTACGCAGTGTGTTCCCCCGACAAGTTTCCCCTAAAAATGCTAACCTCATTGGATGCGGGCAAAAGTTAGCGCTGAGTAAGGCTGTTATCAATAGCTACGCAATCTCAATACATTGGATATCGGAAAGTCACCCCCGAAAACTAAAGACACCTGCGAAAAAGAGGCAACCGACAACATATACGGCCAATTGGTGTACGCTTGGTATTGATAAGGGAGTAGTCCCTCGGCTGATTACGAAATAATATTACTCAGTATAGCCCAGC] [+] EMBL AL932695 [AGATCCCCGAGGTAAAATCTTTGCATACATTCCTGGTGCTGTATCGTGCGAAATTATTCCACGCTTTTGCAGGCTTTCTTGTGAATCAAATCAAACATTTACTATTTTTGTGATTTTGTGCGTGAGTAAAAATGTTGTTGGACAAAAATGTCCCCAATTGCGGAATTCCCTTTGTTTAGATAAGAGAGCGTACGCAGTGTGTTCCCCCGACAAGTTTCCCCTAAAAATGCTAACCTCATTGGATGCGGGCAAAAGTTAGCGCTGAGTAAGGCTGTTATCAATAGCTACGCAATCTCAATACATTGGATATCGGAAAGTCACCCCCGAAAACTAAAGACACCTGCGAAAAAGAGGCAACCGACAACATATACGGCCAATTGGTGTACGCTTGGTATTGATAAGGGAGTAGTCCCTCGGCTGATTACGAAATAATATTACTCAGTATAGCCCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3837#0 CCCCCGAGGTTTAAGGTGTTGTTTTGATCGGTATCAGCGCGGAGGAAAGGAAAATAAATA 60 consensus_3837#1 ----------------------------------------------AGATCCCCGAGGTA 14 * * ** consensus_3837#0 AAATTTTTGCAATACATTCCTC-TGCTGTATCGTGCGAAATTATTCCACGCTTTTGCAGG 119 consensus_3837#1 AAATCTTTGCA-TACATTCCTGGTGCTGTATCGTGCGAAATTATTCCACGCTTTTGCAGG 73 **** ****** ********* ************************************* consensus_3837#0 CTTTATTGTGAATCAAATCAAACATTTACTATTTTTGTGATTTTGTGCGTGAGTAGAAAT 179 consensus_3837#1 CTTTCTTGTGAATCAAATCAAACATTTACTATTTTTGTGATTTTGTGCGTGAGTAAAAAT 133 **** ************************************************** **** consensus_3837#0 ATTGTTGGACAAAAATGTCCCCAAGTGCGGAATTCCCTT-GTTTAGATAAGAGAGCGTAC 238 consensus_3837#1 GTTGTTGGACAAAAATGTCCCCAATTGCGGAATTCCCTTTGTTTAGATAAGAGAGCGTAC 193 *********************** ************** ******************** consensus_3837#0 GCAGTGTGTTCCCCCGACAAGCTTCCCCTAAAAATGCTAGCCTCATTGGATGCGGGCAAA 298 consensus_3837#1 GCAGTGTGTTCCCCCGACAAGTTTCCCCTAAAAATGCTAACCTCATTGGATGCGGGCAAA 253 ********************* ***************** ******************** consensus_3837#0 AGTTAGCGCTGAGTAAGGCTGTTATCAATAGCTACGCAATCTCAATACATTGGATATCGG 358 consensus_3837#1 AGTTAGCGCTGAGTAAGGCTGTTATCAATAGCTACGCAATCTCAATACATTGGATATCGG 313 ************************************************************ consensus_3837#0 AAAGTCACCCCCGAAAACTAAAGACACCTGCGAAAAAGAGGCAACCGACAACATATACGG 418 consensus_3837#1 AAAGTCACCCCCGAAAACTAAAGACACCTGCGAAAAAGAGGCAACCGACAACATATACGG 373 ************************************************************ consensus_3837#0 CCAATTGGTGTACGCTTGGTATTGATAAGGGAGTAGTCCCTCGGCTGATTACGAAATAAT 478 consensus_3837#1 CCAATTGGTGTACGCTTGGTATTGATAAGGGAGTAGTCCCTCGGCTGATTACGAAATAAT 433 ************************************************************ consensus_3837#0 ATTACTCAGTACAGCCCAGCGGAAAGCCTAATCGTGGCGATCGTGATTCACGGCAGTTTA 538 consensus_3837#1 ATTACTCAGTATAGCCCAGC---------------------------------------- 453 *********** ******** consensus_3837#0 CGTTCAGATATTCAACCGTAGTGTTGACGCTGAGTGAAATCGTGCACGGTGAAGCACTGC 598 consensus_3837#1 ------------------------------------------------------------ consensus_3837#0 AGCAACAATGTTTCGTAAAATATGGAAATCCATTTCCTCCTTTTATCTGCTGTACGAACT 658 consensus_3837#1 ------------------------------------------------------------ consensus_3837#0 CAACACCTGCATATACATGCTGGATCCTTGGGAAAAGCGCTTTGTCAATGCGTTCATATT 718 consensus_3837#1 ------------------------------------------------------------ consensus_3837#0 TGCCATTTTAGGGCTGCTGATCTTCTCGAGCTACACGTTCCTGCCGGGATACACGCGGAA 778 consensus_3837#1 ------------------------------------------------------------ consensus_3837#0 ATTGGTTAACGCATTCCTTCCTGCCCATTCCGCCCTGTCCGATCTCGACATGGACCATCA 838 consensus_3837#1 ------------------------------------------------------------ consensus_3837#0 GCGATCGATGGAGTTCAACATACACTGACGATAGAGGGGTTGTGATGCCATCGGAGGACC 898 consensus_3837#1 ------------------------------------------------------------ consensus_3837#0 CTTTGTGATACCGCAAATCAAGGGCCAATGGAGGGAACATTGAACGCACCGACGAACCTT 958 consensus_3837#1 ------------------------------------------------------------ consensus_3837#0 GCCAATGTGCAGAGCACAAACAATCGGAGCACCGCTAACTAGACAAGCTTAACTCTAATG 1018 consensus_3837#1 ------------------------------------------------------------ consensus_3837#0 TTACAAACAAATTCGATACAATTGTAGTCAGAAGCTGTGTTAATTTTGGTTTGAATGCCC 1078 consensus_3837#1 ------------------------------------------------------------ consensus_3837#0 TTACTTTCGATTGCTTTTGAGCGTTAGTTAGAAATAGTGATGCAAAATCTT 1129 consensus_3837#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||