These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [CCGCGGACGCGTGGGCTGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGAAAAAAGAAAGCCAAGCAGCAGCAGGCGGTGCCGGGCGTGGTTCCAGAACAGCAGCACAAGCAGCAAAATGGCGCCACCGGCGCCGAACCGAAGAAGAAAGCGTCGAAAAAAGGGCGCACCGCCAAGGTGAACGGCGGTGCGGTTGGTTTGCCGCCGACGAGTGTCGTTACGCCGCTGAAGCGCGCCTCCCAGATCAAGCAGGAACCAAAGACACCGAGCAGGGCGGCCCATTCACCCATCGTCGGCGGCACCTCCTCCTCCACCACCACTGCCAGCCCGGCCGGCACGGCCCTGCACGAGCTGGACAGTGTGACGATTGGGCGCCAGACGTTCGCGTGGCTCATCGGCCCCACCATATCGGTGGACGAGTTTATGCGCACGCACTGGGAGCGGAAGCCGCTGCTGGTGCAGCGCAACGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGCCATGATCGACGAGATGCTGCGCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTTACCGGGACGGGCAGCGCGAGACGCACAATCCGGGACGGGCGCGTGCTCCCGCCCGACCTGTGGCATTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACG] [+] EMBL BM603376 [CCGCGGACGCGTGGGCTGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGAAAAAAGAAAGCCAAGCAGCAGCAGGCGGTGCCGGGCGTGGTTCCAGAACAGCAGCACAAGCAGCAAAATGGCGCCACCGGCGCCGAACCGAAGAAGAAAGCGTCGAAAAAAGGGCGCACCGCCAAGGTGAACGGCGGTGCGGTTGGTTTGCCGCCGACGAGTGTCGTTACGCCGCTGAAGCGCGCCTCCCAGATCAAGCAGGAACCAAAGACACCGAGCAGGGCGGCCCATTCACCCATCGTCGGCGGCACCTCCTCCTCCACCACCACTGCCAGCCCGGCCGGCACGGCCCTGCACGAGCTGGACAGTGTGACGATTGGGCGCCAGACGTTCGCGTGGCTCATCGGCCCCACCATATCGGTGGACGAGTTTATGCGCACGCACTGGGAGCGGAAGCCGCTGCTGGTGCAGCGCAACGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGCCATGATCGACGAGATGCTGCGCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTTACCGGGACGGGCAGCGCGAGACGCACAATCCGGGACGGGCGCGTGCTCCCGCCCGACCTGTGGCATTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACG] consensusID : consensus_3841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGGGCGCGTGTTGTGGAACACAGCTTCACACCCCTCGTCGCTCCGTGTTGCGCGAAAAACAGAAGCGCGTGCGATTATTCCCTTCCGTAAAGCAAAACGCAACGCTTGCCACCCAGTTCCGCACGATGGAAACAGCCACCGCCACCCCAGGCCCTCCCGAGCTGGTCCTCCCGAAGGATGAACCCGGCGCCGGGAATGGTGTGACGCCGGGTGGCGCTACCATCACCACCAGCACACCGCTAACCGGAAGCAACAAAAAGCCACCGCAGAAAAGGAAAAAACCGGCAGCCTCTCCGCAACCCTCCCCGAGCACAAAGCCAAAGCAGGACAGTGAGCCTGCTGCCGCTGACGGTAGCACCACCAACGGTGAACAGGTGCGGCCAGTGCCGGAAGGATCGTCCCAAGCGGAACCTGCATCCGTGGTGAAAAAGCAGAAGAAAAAGCACACTGAAGAGGGAAAGCAAACGACGACGTCGACGTCGACGACGCCACCGGGAAAGAAGCAAAAAGGGGCCACCGGCAAACATGTGCGCTTTCACATTAAGCTGTATTCCGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGAAGAAAAAGAAAGCTAAGCAGCAGCAGGCGGTGCCGGGCGTGGGTTCCAGAACAGCAG] [+] EMBL BM604670 [CCGGGCGCGTGTTGTGGAACACAGCTTCACACCCCTCGTCGCTCCGTGTTGCGCGAAAAACAGAAGCGCGTGCGATTATTCCCTTCCGTAAAGCAAAACGCAACGCTTGCCACCCAGTTCCGCACGATGGAAACAGCCACCGCCACCCCAGGCCCTCCCGAGCTGGTCCTCCCGAAGGATGAACCCGGCGCCGGGAATGGTGTGACGCCGGGTGGCGCTACCATCACCACCAGCACACCGCTAACCGGAAGCAACAAAAAGCCACCGCAGAAAAGGAAAAAACCGGCAGCCTCTCCGCAACCCTCCCCGAGCACAAAGCCAAAGCAGGACAGTGAGCCTGCTGCCGCTGACGGTAGCACCACCAACGGTGAACAGGTGCGGCCAGTGCCGGAAGGATCGTCCCAAGCGGAACCTGCATCCGTGGTGAAAAAGCAGAAGAAAAAGCACACTGAAGAGGGAAAGCAAACGACGACGTCGACGTCGACGACGCCACCGGGAAAGAAGCAAAAAGGGGCCACCGGCAAACATGTGCGCTTTCACATTAAGCTGTATTCCGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGAAGAAAAAGAAAGCTAAGCAGCAGCAGGCGGTGCCGGGCGTGGGTTCCAGAACAGCAG] consensusID : consensus_3841#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [GACCCACGCGTCCGCCCACGCGTCCGGCACTGGGAACGGAAGCCGCTGCTGGTGCAGCGCAGCGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGGATGATCGACGAGATGCTGCGCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTACCGGGACGGGCAGCGCGAGACGCACAATCCGGACGGGCGCGTGCTACCGCCCGACCTGTGGCACTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACGAGCTGAACGTGAAGCTGCAGGAGTACTTCCACTGCATGACGGGGGCGAACTTCTACCTGACGCCGCCGGGCAGCCAGGGCTTCGCGCCGCACTACGACGACATCGAGGCGTTTGTGCTGCAGATCGAGGGCCGCAAGCGCTGGCGCCTGTACGGGCCCCGCCAGCCGCAGGAGGTGCTGGCGCGCGTGTCGTCGGAAAACCTGCGCCAGGACGAGCTGGCCGGGCCGCCCATCGTCGACGTGGTGCTGGAGGCGGGCGATCTGCTGTACTTTCCGCGCGGCTGCATCCACCAGGCGGCCACCGTGCCGGGCGGCCACTC] [+] EMBL BM644647 [GACCCACGCGTCCGCCCACGCGTCCGGCACTGGGAACGGAAGCCGCTGCTGGTGCAGCGCAGCGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGGATGATCGACGAGATGCTGCGCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTACCGGGACGGGCAGCGCGAGACGCACAATCCGGACGGGCGCGTGCTACCGCCCGACCTGTGGCACTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACGAGCTGAACGTGAAGCTGCAGGAGTACTTCCACTGCATGACGGGGGCGAACTTCTACCTGACGCCGCCGGGCAGCCAGGGCTTCGCGCCGCACTACGACGACATCGAGGCGTTTGTGCTGCAGATCGAGGGCCGCAAGCGCTGGCGCCTGTACGGGCCCCGCCAGCCGCAGGAGGTGCTGGCGCGCGTGTCGTCGGAAAACCTGCGCCAGGACGAGCTGGCCGGGCCGCCCATCGTCGACGTGGTGCTGGAGGCGGGCGATCTGCTGTACTTTCCGCGCGGCTGCATCCACCAGGCGGCCACCGTGCCGGGCGGCCACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3841#0 CCGCGGACGCGTGGGCTGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGA 60 consensus_3841#2 -----GACCCACGCG-TCCGCCCACGCGTCCGGCACTGGGAACGGAAGCCGCTGCTG--- 51 consensus_3841#1 --CCGGGCGCGTGTTGTGGAACACAGCTTCACACCCCT----CGTCGCTCCGTGTTGCGC 54 * * * * * * ** * * ** ** consensus_3841#0 AAAAAGAAAGCCAAGCAGCAGCAGGCGGTGCCGGGCGTGGTTCCAGAACAGCAGCACAAG 120 consensus_3841#2 -------GTGCAGCGCAGCGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGG-ATGAT 103 consensus_3841#1 GA----AAAACAGAAGCGCGTGCGATTATTCCCTTCCGTAAAGCAAAAC-GCAACGCTTG 109 * ** * * * * * * ** consensus_3841#0 CAGCAAAATG----GCGCCACCGGCGCCGAACCGAAGAAGAAAGCGTCGAAAAAAGGGCG 176 consensus_3841#2 CGACGAGATGCTGCGCACGAACAACATCGAGTACACGA--AAAACATCGACATCACGTCG 161 consensus_3841#1 CCACCCAGTTCCGCACGATGGAAACAGCCACCGCCACCCCAGGCCCTCCCGAGCTGGTCC 169 * * * * * * * * * ** * * * consensus_3841#0 CACCGCCAAGGTGAACGGCGGTGCGGTTGGTTTGCCGCCGACGAGTGTCGTTAC-GCCGC 235 consensus_3841#2 TACCGGGACGGGCAGCG-CGAGACGCACAATCCGG-ACGGGCGCGTGCTACCGC-CCGAC 218 consensus_3841#1 TCCCGA-AGGATGAACC-CGGCGCCGGGAATGGTGTGACGCCGGGTGGCGCTACCATCAC 227 *** * * * * ** * * * ** *** * * consensus_3841#0 -TGAAGCGCGCCTCCCAGATCAAGCAGGAACCAAAGACACCGAGCAGGGCGGCCCATTCA 294 consensus_3841#2 CTGTGGCACTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTG 278 consensus_3841#1 CACCAGCACACCGCTAACCGGAAGCAACAA--AAAGCCACCGCAGAAAAGGAAAAAACCG 285 ** * * * * * consensus_3841#0 CCCATCGTCGGCGGCACCTCCTCCTCCACCACCACTGCCAGCCCGGCCGGCACGGCCCTG 354 consensus_3841#2 CGCTCCGTGTACG--AGCTGAACGTGAAGCTGCAGGAGTACTTCCACTG-CATGACGGGG 335 consensus_3841#1 -GCAGCCTCTCCGCAACC--CTCCCCGAGCACAAAGCCAAAGCAGGACAGTGAGCCTGCT 342 * * * ** * * * * * * * * * consensus_3841#0 CACGAGCTGGACAGTGTGACGATTGGGCGCCAGACGTTCGCGTGGCTCATCGGCCCCACC 414 consensus_3841#2 GCGAACTTCTACCTGACGCCGCCGGGCAGCCAGGGCTTCGCGCCGCACTACGACGACATC 395 consensus_3841#1 GCCGCTGACGGTAGCACCACCAACGGTGAACAGGTGCGGCCAGTGCCGGAAGGATCGTCC 402 * ** *** * ** * * consensus_3841#0 ATATCGGTGGACGAGTTTATGCGCACGCACTGGGAGCGGAAGC-CGCTGCTGGTGCAGCG 473 consensus_3841#2 ---------GAGGCGTTTGTGC-TGCAGATCGAGGGCCGCAAG-CGCTGGCGCC----TG 440 consensus_3841#1 CAAGCGGAACCTGCATCCGTGGTGAAAAAGCAGAAGAAAAAGCACACTGAAGAGGGAAAG 462 * * ** * * * * *** * * consensus_3841#0 CAA-CGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGCCATGATCGACGAGATGCTGC 532 consensus_3841#2 TAC-GGGCCCCGCCAGCCGCAGGAGG-TGCTGGCGCGCGT-GTCGTCG--GAAAACCTGC 495 consensus_3841#1 CAAACGACGACGTCGACGTCGACGAC--GCCA--CCGGGAAAGAAGCAAAAAGGGGCCAC 518 * * * ** * ** ** * * * * * consensus_3841#0 GCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTTACCGGGACGGGCAG 592 consensus_3841#2 GCCAGGACGAGCTGGCCGGGCCGCCCATCGTCGACGTGGTGCTG-----GAGGCGGGCGA 550 consensus_3841#1 CGGCAAACATGTGCGCTTTCACATTAAGC-TGTATTCCGCATCG----------AAGCAA 567 ** * * * * * * * ** consensus_3841#0 CGCGAGACGCACAATCCGGGACGGGCGCGTGCTCCCGCCCGACCTGTGGCATTTCTACGA 652 consensus_3841#2 TCTGC--TGTACTTTCCGCG-CGGCTGCATCCACCAGGCGGCCACCGTGCCGGGCGGCCA 607 consensus_3841#1 C-CGA---CCGCTG-CCACGACGGCTG-GCATTGCGAAGAAAAAGAAAGCTAAGCAGCAG 621 * * ** * *** * * ** * * consensus_3841#0 CGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACG 708 consensus_3841#2 CTC----------------------------------------------------- 610 consensus_3841#1 CAGGCGGTGCCGGGCGTGGGTTCCAGAACAGCAG---------------------- 655 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||