These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CACTAGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTGCGGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGGGGGCGGCGGCGGCGGCGGCGGCAATGGGATCGGCGGTGTGGCGGGTGGGCCGGGCGGACCGGGCAGCGGCGTCCCGCTCGGCACGATGCTGGGCCACCATCACAACAATCCGCACGCGCTCGGCCGGAGCTGCAACGAGGACGCCCGGGCCGGCAACGATGGCTGCGGCCAGTTCGATCCGACCGGCGAGCATCTGCGGGCGGCCATGCGCGAACACCAGGCACAGCAGCAGCAGCAGCAGCAGTCGAACGACGATTGCCACCCGTTCGCCCACAGTCCCGTGCCGCGCAACGGGCTCGACCTTACCGATGAGTTCCTAAAGAGTGAGAACGTGCTGAAGGGATGAGAGTAGACGGCCCGCTACCACACGCCAACCGCCGGTAGTTGGGGTGCGGAGTAAAGCGAGCCGAGAGTGGGAGTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTG] [+] EMBL BX616548 [CACTAGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTGCGGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGGGGGCGGCGGCGGCGGCGGCGGCAATGGGATCGGCGGTGTGGCGGGTGGGCCGGGCGGACCGGGCAGCGGCGTCCCGCTCGGCACGATGCTGGGCCACCATCACAACAATCCGCACGCGCTCGGCCGGAGCTGCAACGAGGACGCCCGGGCCGGCAACGATGGCTGCGGCCAGTTCGATCCGACCGGCGAGCATCTGCGGGCGGCCATGCGCGAACACCAGGCACAGCAGCAGCAGCAGCAGCAGTCGAACGACGATTGCCACCCGTTCGCCCACAGTCCCGTGCCGCGCAACGGGCTCGACCTTACCGATGAGTTCCTAAAGAGTGAGAACGTGCTGAAGGGATGAGAGTAGACGGCCCGCTACCACACGCCAACCGCCGGTAGTTGGGGTGCGGAGTAAAGCGAGCCGAGAGTGGGAGTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTG] consensusID : consensus_3848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [ATAGCAACAATAGTCAATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAACACCATGCACGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTGCGGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGAGTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTGGAAGAAGTTGAAGCAAAAGTTACCCCTTCATTTGGTGCATTTAGTCGCGATGGGGGACCGAAGGAGCAGCAGTCTTCACGTGTGGGAAAGGGGGAAGAAGGGAAAAGGGAGCCTCATTTAACAAACAAGTAGTAGCAAAACGATTGTTCGTCCTGTTCACCTTTC] [+] EMBL BX628088 [ATAGCAACAATAGTCAATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAACACCATGCACGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTGCGGCTCGCCGTGTCCCAGGCGCAGGCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGAGTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTGGAAGAAGTTGAAGCAAAAGTTACCCCTTCATTTGGTGCATTTAGTCGCGATGGGGGACCGAAGGAGCAGCAGTCTTCACGTGTGGGAAAGGGGGAAGAAGGGAAAAGGGAGCCTCATTTAACAAACAAGTAGTAGCAAAACGATTGTTCGTCCTGTTCACCTTTC] consensusID : consensus_3848#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence [GACCCACGCGTCCGGGCTGCCCAATCCGCACGGGCTGCCGTTTGGCGGCACCAACGGAGGGCTCGGTGGATCGAACGGCAGCGGCCCGAACGGGGTGACGGGGCCCGGCGGCATCTGTGGTGGTGGTGGCGGCGGCGGTGGCGGCGTCGGGGGCAGTGCGATGGATAGCAACAATAGTCAATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAACACCATGCACGGCGAGCTGCACGGTAACGCGAACCTCGGTCCGTTGAAGAAGAAAAGTAATATGCTTAGTTTTAACGACTCCAAATACTCACTA] [+] EMBL BM603005 [GACCCACGCGTCCGGGCTGCCCAATCCGCACGGGCTGCCGTTTGGCGGCACCAACGGAGGGCTCGGTGGATCGAACGGCAGCGGCCCGAACGGGGTGACGGGGCCCGGCGGCATCTGTGGTGGTGGTGGCGGCGGCGGTGGCGGCGTCGGGGGCAGTGCGATGGATAGCAACAATAGTCAATTTTCGCGCATGATGATGATCCAGGAGCCGAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGCGGTGCAGGCGGCGGTGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAACACCATGCACGGCGAGCTGCACGGTAACGCGAACCTCGGTCCGTTGAAGAAGAAAAGTAATATGCTTAGTTTTAACGACTCCAAATACTCACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3848#1 ------------------------------------------------------------ consensus_3848#2 ------------------------------------------------------------ consensus_3848#0 CACTAGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTCGTCGATCGGGCAGAACC 60 consensus_3848#1 ----------------------------ATAGCAACAATAGTCAATTTTCGCGCATGATG 32 consensus_3848#2 ------------------------------------------------------------ consensus_3848#0 ACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCAGGCGGAGGCGATCCTGCGCT 120 consensus_3848#1 ATGATCCAGGAGCCG-AAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACGCCGTCGGC 91 consensus_3848#2 ---------GACCCACGCGTCCGGGCTG--CCCAATCC---GCACGGGCTGCCGTTTGGC 46 consensus_3848#0 CGCAGGCGGAGGCCG-CCCTGCGGCTCG--CCGTGTCCCAGGCGCAGGCCGTCGTCTCGT 177 ** * ** * ** * * * *** * * consensus_3848#1 GG--TGCAGGCGGCGG---TGGTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTT- 145 consensus_3848#2 GG--CACCAACGGAGGGCTCGGTGGATCGAACGGCAGCGGCCCGAACGGGGT-GACG--- 100 consensus_3848#0 CGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGGGGGCGGCGGCGGCGGCGGCGGCA 237 * * * ** ** * * ** * * * * ** consensus_3848#1 -CAAGAGCAACACCATGCACGCTAACCGGCAAAAATATCCCGTGGCGTCCGCAGAGTC-G 203 consensus_3848#2 --GGGCCCGGCGGCATCTGTGGTGGT-GGTGGCGGCGGCG-GTGGCGGCGTCGGGGGCAG 156 consensus_3848#0 ATGGGATCGGCGGTGTGGCGGGTGG--GCCGGGCGGACCGGGCAGCGGCGTCCCGCTCGG 295 * * * * * * * * * *** * * * * consensus_3848#1 TCGATCGGGCAGAACCACTGTCCCGCTACCTCGGAGACGGCGATACGGATCCAGCA-GGC 262 consensus_3848#2 TGCGATGGATAGCAACAATAGTCAATT--TTCGCGCATGATGAT---GATCCAGGA-GCC 210 consensus_3848#0 CACGATG--CTGGGCCACCATCACAACAATCCGCACGCGCTCGGCCGGAGCTGCAACGAG 353 * * ** ** * ** * * * consensus_3848#1 GGAGGCGATCCTGCGCTCGCAGGCGGAGGCCGCCCTG---CGGCTCGCCG-----TGTCC 314 consensus_3848#2 GAAGTTCGAGCCGGACCTGATGCTGAACGAGGGCACG---CCGTCGGCGG-----TGCAG 262 consensus_3848#0 GACGCCCGGGCCGGCAACGATGGCTGCGGCCAGTTCGATCCGACCGGCGAGCATCTGCGG 413 * * * * * * * * * ** ** consensus_3848#1 CAGGCGCAG-GCCGTCGTCTCGTCGAACGCCAGCATCGGCGGGGGCGGAGGGGGCGGTGA 373 consensus_3848#2 GCGGCGGTG-GTGAACCTCGCGACCGCGATGCGCATCGGCCAGACGTTCAAGAGCAAC-A 320 consensus_3848#0 GCGGCCATGCGCGAACACCAGGCACAGCAGCAGCAGCAGC-AGCAGTCGAACGACGATTG 472 *** * * * * * *** * ** * * consensus_3848#1 GTGGGCGCTGGGGAAGATTGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTGGAAGAAGT 433 consensus_3848#2 CCATGCAC---GGCGAGCTGCACGGTAA-----CGCGAACCTCGGTCCGTTGAAGAAGA- 371 consensus_3848#0 CCACCCGTT--CGCCCACAGTCCCGTGCCGCGCAACGGGCTCGACCTTACCGATGAGTTC 530 * * * ** * * consensus_3848#1 TGAAGCAAAAGTTACCCCTTCATTTGGTGCATTTAGTCGCGATGGGGGACCGAAGGAGCA 493 consensus_3848#2 -AAAGTAATATGCTTAGTTTTAACGACTCCAAATACTCACTA------------------ 412 consensus_3848#0 CTAAAGAGTGAGAACGTGCTGAAGGGATGAGAGTAGACGGCCCGCTACCACACGCCAACC 590 ** * * * * ** * consensus_3848#1 GCAGTCTTCACGTGTGGGAAAGGGGGAAGAAGGGAAAAGGGAGCCTCATTTAACAAACAA 553 consensus_3848#2 ------------------------------------------------------------ consensus_3848#0 GCCGGTAGTTGGGGTGCGGAGTAAAGCGAGCCGAGAGTGGGAGTGGGCGCTGGGGAAGAT 650 consensus_3848#1 GTAGTAGCAAAACGATTGTTCGTCCTGTTCACCTTTC 590 consensus_3848#2 ------------------------------------- consensus_3848#0 TGCGGGGTCAGTGATTGCCTATTTTTGTTTGTTG--- 684 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||