These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1019 fasta sequence [GGCAGAATCCCCGAGGTTTACATTGTTTACAAAACCGTATCAGAGCGTTTCGGCGTACAATTGTATATTCCACACTGGCCAACAGGTTTATGAACATCATGAGAAGAGTAACAAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGTCGAAAACGGAGCCAAACCTTCGCCTGTTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTTCCCAAATAACATTTCAACATCGGAATACGATACCACTCTGTATCGGCAGCATTGATGCCTACCGGCAAGATGTAACAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACCGGATTGTTTGACAATGCAGCTCAGTCTGTTGAAACGCGGAGGACTGCTGATCACATACGGACCGTACGCCGTGGACGGCACTCTCACTCCGGCAGCAGTAACGTACGTTNCACTGCAACTCATTGCAGCATCGTAACCCCGAGTGGGGTATACGCGACACGAANAGAGCTGAGCACGTATGGCCGACATCGACACAGGTATTACGCTGCNNAGAGATGNTTGCACTACCTGCAAACAACACAACTGTCTGACTTGGCAACAACACGATGCCAACTACAANGGCCCNAAAAAACAAAGGNCGGTGCACCACCCCCCGCCAANACGGTGCAACCCAACAAAACCGGGCACNNNACGCCNCAAACTNATAACCACCAAGGGAAGACCNGCNAAACCCCACCANACAAAACACACCACACACANAACAACCAAACAAAANAAACACAAACNCANCACCAACAAAACANNAACAACCACCNACACAAGAANCACAAACCACGAGACAAAACCAACGCACAAACACCCGCNCCAAAAACNNCANAA] [+] EMBL AL695023 [GGCAGAATCCCCGAGGTTTACATTGTTTACAAAACCGTATCAGAGCGTTTCGGCGTACAATTGTATATTCCACACTGGCCAACAGGTTTATGAACATCATGAGAAGAGTAACAAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGTCGAAAACGGAGCCAAACCTTCGCCTGTTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTTCCCAAATAACATTTCAACATCGGAATACGATACCACTCTGTATCGGCAGCATTGATGCCTACCGGCAAGATGTAACAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACCGGATTGTTTGACAATGCAGCTCAGTCTGTTGAAACGCGGAGGACTGCTGATCACATACGGACCGTACGCCGTGGACGGCACTCTCACTCCGGCAGCAGTAACGTACGTTNCACTGCAACTCATTGCAGCATCGTAACCCCGAGTGGGGTATACGCGACACGAANAGAGCTGAGCACGTATGGCCGACATCGACACAGGTATTACGCTGCNNAGAGATGNTTGCACTACCTGCAAACAACACAACTGTCTGACTTGGCAACAACACGATGCCAACTACAANGGCCCNAAAAAACAAAGGNCGGTGCACCACCCCCCGCCAANACGGTGCAACCCAACAAAACCGGGCACNNNACGCCNCAAACTNATAACCACCAAGGGAAGACCNGCNAAACCCCACCANACAAAACACACCACACACANAACAACCAAACAAAANAAACACAAACNCANCACCAACAAAACANNAACAACCACCNACACAAGAANCACAAACCACGAGACAAAACCAACGCACAAACACCCGCNCCAAAAACNNCANAA] consensusID : consensus_3856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 917 fasta sequence [CAAGAATCCCGCACGAGGACAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGACGAAAACGGAGCCAAACCTTCGCCTGCTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGTTCGGCAGCATTGATGCCTACCGGCAAGATGTAAAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCCAACATCAACCATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACGGATTGTTTGACAATGCAGCTCAGTTGTTGAAACGCGGAGGACTGCTGATAACATACGGACCGTACGCCGTGGACGGCACTCTCACTCCGGAGAGTAACGTACGTTTCAATGAATCATTGCAGCATCGTAACCCCGAGTGGGGTATACGCGACACGAAAGAGCTGAGCACGTTGGCCGCATCGAAAGGTATTACGCTGCAAGAGATGATTGAACTACCTGCAAAACAACAAATGTGTCGATTTGGAAAAAAGGATACAAATCATGCCTAAAGAAGTGTGACTTTCCCCGCTAAANTGTTTCCAACCAAACACTGGGCAGAANCGGAAAATTAGAANGTTTATTGGTACCTTGAAAACCCCAANAAAACANCACACGCCATCAAACACAGGGCATCTGGTTGCGGGGCCCGAAAAGGCTTATTCCCCCTTTAGATGAACGGGTCACATTTACAGCCTTGGGGCCNCTGGCCGTCCGTTTCACGAACAGGCATACACTGGGNAAAACCCGGGTTACCAAGTTAANCCGCCTTG] [+] EMBL BX467423 [CAAGAATCCCGCACGAGGACAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGACGAAAACGGAGCCAAACCTTCGCCTGCTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGTTCGGCAGCATTGATGCCTACCGGCAAGATGTAAAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCCAACATCAACCATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACGGATTGTTTGACAATGCAGCTCAGTTGTTGAAACGCGGAGGACTGCTGATAACATACGGACCGTACGCCGTGGACGGCACTCTCACTCCGGAGAGTAACGTACGTTTCAATGAATCATTGCAGCATCGTAACCCCGAGTGGGGTATACGCGACACGAAAGAGCTGAGCACGTTGGCCGCATCGAAAGGTATTACGCTGCAAGAGATGATTGAACTACCTGCAAAACAACAAATGTGTCGATTTGGAAAAAAGGATACAAATCATGCCTAAAGAAGTGTGACTTTCCCCGCTAAANTGTTTCCAACCAAACACTGGGCAGAANCGGAAAATTAGAANGTTTATTGGTACCTTGAAAACCCCAANAAAACANCACACGCCATCAAACACAGGGCATCTGGTTGCGGGGCCCGAAAAGGCTTATTCCCCCTTTAGATGAACGGGTCACATTTACAGCCTTGGGGCCNCTGGCCGTCCGTTTCACGAACAGGCATACACTGGGNAAAACCCGGGTTACCAAGTTAANCCGCCTTG] consensusID : consensus_3856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [AGATCGCCCGAGGTTCTGAACCACTGCTAAACGAAATAATTATATCGCTTGTAATTTAAATTCTACATTCCAGCATCATGAGAAGAATAACAAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAAGCGAGCATTGTCGAAAACGGAGCCAAACCTTCGCCTGCTGGAAATTTCTTCAGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGTTCGGCAGCATTGATGCCTACCGGCAAGATGTAAAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACCATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACGGATTGTCTGACAATGCAGCTCAGCTGTTGAAACGCGGAGGACTGCTGATAACATACGGACCGTACGCCGTGGACGGCACTCTCGCTCCGGAGAGTAACGTACGTCAATGAATCATNGCAGCATCGTAACNCCCGAACNGGGGNCATACGCGACACGAACAGAGCCGAGCACGTTGGNC] [+] EMBL AL931693 [AGATCGCCCGAGGTTCTGAACCACTGCTAAACGAAATAATTATATCGCTTGTAATTTAAATTCTACATTCCAGCATCATGAGAAGAATAACAAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAAGCGAGCATTGTCGAAAACGGAGCCAAACCTTCGCCTGCTGGAAATTTCTTCAGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGTTCGGCAGCATTGATGCCTACCGGCAAGATGTAAAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACCATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACGGATTGTCTGACAATGCAGCTCAGCTGTTGAAACGCGGAGGACTGCTGATAACATACGGACCGTACGCCGTGGACGGCACTCTCGCTCCGGAGAGTAACGTACGTCAATGAATCATNGCAGCATCGTAACNCCCGAACNGGGGNCATACGCGACACGAACAGAGCCGAGCACGTTGGNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3856#0 GGCAGAATCCCCGAGGTTTACATTGTTTACAAAACCGTATCAGAGCGTTTCGGCGTACAA 60 consensus_3856#2 ---AGATCGCCCGAGGTTCTGAACCACTGCTAAACGAAATAATTATATC---GCTTGTAA 54 consensus_3856#1 ------------------------------------------------------------ consensus_3856#0 TTGTATATTCCACACTGGCCAACAGGTTTATGAACATCATGAGAAGAGTAACAAATCCGG 120 consensus_3856#2 TT-TAAATTCTACATT--------------CCAGCATCATGAGAAGAATAACAAATCCGG 99 consensus_3856#1 ----------------------------CAAGAATCCCGCACGAGGA-----CAATCCGG 27 * * ** ** ******* consensus_3856#0 CCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGTCGAAAACGG 180 consensus_3856#2 CCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAAGCGAGCATTGTCGAAAACGG 159 consensus_3856#1 CCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGACGAAAACGG 87 *************************************** ***** **** ********* consensus_3856#0 AGCCAAACCTTCGCCTGTTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTG 240 consensus_3856#2 AGCCAAACCTTCGCCTGCTGGAAATTTCTTCAGGAGTTGGGCTGCACGCAGCTTACTTTG 219 consensus_3856#1 AGCCAAACCTTCGCCTGCTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTG 147 ***************** ************* **************************** consensus_3856#0 CCAAGGAATTTCCCAA-ATAACATTTCAAC-ATCGGAATACGATACCACTCTGTATCGGC 298 consensus_3856#2 CCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGT-TCGGC 278 consensus_3856#1 CCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGT-TCGGC 206 ********** ***** ******** **** *********************** ***** consensus_3856#0 AGCATTGATGCCTACCGGCAAGATGTAACAGAACGTTGAACCTCCCATCTTCATCGACAT 358 consensus_3856#2 AGCATTGATGCCTACCGGCAAGATGTAA-AGAACGTTGAACCTCCCATCTTCATCGACAT 337 consensus_3856#1 AGCATTGATGCCTACCGGCAAGATGTAA-AGAACGTTGAACCTCCCATCTTCATCGACAT 265 **************************** ******************************* consensus_3856#0 TTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAAC-ATACTTCCGGTGCCAA 417 consensus_3856#2 TTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACCATACTTCCGGTGCCAA 397 consensus_3856#1 TTCCAAACCGTGCACGGATTGGCAGAATGAGGCCAACATCAACCATACTTCCGGTGCCAA 325 ********************************* ********* **************** consensus_3856#0 CCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCA 477 consensus_3856#2 CCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCA 457 consensus_3856#1 CCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCA 385 ************************************************************ consensus_3856#0 CCGGATTGTTTGACAATGCAGCTCAGTCTGTTGAAACGCGGAGGACTGCTGATCACATAC 537 consensus_3856#2 C-GGATTGTCTGACAATGCAGCTCAG-CTGTTGAAACGCGGAGGACTGCTGATAACATAC 515 consensus_3856#1 C-GGATTGTTTGACAATGCAGCTCAG-TTGTTGAAACGCGGAGGACTGCTGATAACATAC 443 * ******* **************** ************************* ****** consensus_3856#0 GGACCGTACGCCGTGGACGGCACTCTCACTCCGGCAGCAGTAACGTACGTTNCACTGCAA 597 consensus_3856#2 GGACCGTACGCCGTGGACGGCACTCTCGCTCCGGAG--AGTAACGTACGTCA----ATGA 569 consensus_3856#1 GGACCGTACGCCGTGGACGGCACTCTCACTCCGGAG--AGTAACGTACGTTTCA--ATGA 499 *************************** ****** ************ * consensus_3856#0 CTCATTGCAGCATCGTAACCCCGA---GTGGGGTATACGCGACACGAANAGAGCTGAGCA 654 consensus_3856#2 ATCATNGCAGCATCGTAACNCCCGAACNGGGGNCATACGCGACACGAACAGAGCCGAGCA 629 consensus_3856#1 ATCATTGCAGCATCGTAACCCCGA---GTGGGGTATACGCGACACGAA-AGAGCTGAGCA 555 **** ************* ** *** ************** ***** ***** consensus_3856#0 CGTATGGCCGACATCGACACAGGTATTACGCTGCNNAGAGATGNTTGCACTACCTGCAAA 714 consensus_3856#2 CGT-TGGNC--------------------------------------------------- 637 consensus_3856#1 CGT-TGGCCG-CATCGAA--AGGTATTACGCTGCAA-GAGATGATTGAACTACCTGCAAA 610 *** *** * consensus_3856#0 -CAACACAACTGTCTGACTTGGCAACAACACGATGCCAACTACAANGGCCCNAAAAAACA 773 consensus_3856#2 ------------------------------------------------------------ consensus_3856#1 ACAACAAATGTGTC-GATTTGGAAAAAAG--GATACAAATCATG-----CCTAAAGAA-- 660 consensus_3856#0 AAGGNCGGTGCACCACCCCCCGCCAANACGGTGCAACCCAA---CAAAACCGGGCACNNN 830 consensus_3856#2 ------------------------------------------------------------ consensus_3856#1 -------GTGTGACTTTCCCCGCTAAANTGTTTCCAACCAAACACTGGGCAGAANCGGAA 713 consensus_3856#0 ACGCCNCAAACTNATAACCACCAAGGGAAGACCNGCNAAACCCCACCANACAAAACACAC 890 consensus_3856#2 ------------------------------------------------------------ consensus_3856#1 AATTAGAANGTTTATTGGTACCTTGAAAACCCCAANAAAACANCACACGCCATCAAACAC 773 consensus_3856#0 CACACACANAACAACCAAACAAAANAAACACAAACNCANCACCAACAAAACANNAACAAC 950 consensus_3856#2 ------------------------------------------------------------ consensus_3856#1 AGGGCATCTGGTTGCGGGGCCCGAAAAGGCTTATTCCCCCTTTAGATGAACGGGTCACAT 833 consensus_3856#0 CACCNACACAAGAANCACAAACCACGAGACAAAACCAACGCACAAACACCCGCNCCAAAA 1010 consensus_3856#2 ------------------------------------------------------------ consensus_3856#1 TTACAGCCTTGGGGCCNCTGGCCGTCCGTT-----TCACGAACAGGCATACACTGGGNAA 888 consensus_3856#0 ACNNCANAA-------------------- 1019 consensus_3856#2 ----------------------------- consensus_3856#1 AACCCGGGTTACCAAGTTAANCCGCCTTG 917 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||