These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [CCGAGAGCCCCGAACGACGATTCTGTCTGCTGAATTTGGCCGTGCCTGCGTCTAGGAGCGGTTCGCATCTCGTAATCCTCCTCATCCAGCCGTGCAGCCGTGTTTGTTTGGGTGCAGTGACCACTACAGTGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCGATTGTGCAAAAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAAACAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGAAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGGCACCGCCGCCTCCGGGCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACC] [+] EMBL BM624308 [CCGAGAGCCCCGAACGACGATTCTGTCTGCTGAATTTGGCCGTGCCTGCGTCTAGGAGCGGTTCGCATCTCGTAATCCTCCTCATCCAGCCGTGCAGCCGTGTTTGTTTGGGTGCAGTGACCACTACAGTGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCGATTGTGCAAAAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAAACAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGAAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGGCACCGCCGCCTCCGGGCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACC] consensusID : consensus_3859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGACCGGAAGTTAGTGTGTATTTGTGAGTGTGTTTGTGCGCCGTTTCGTGTGTGAAGCAAAGCTCCTCCCTCCCCTCGGAGCCACACTTCCGTTTGCCGGTTACCGTGTGCACGTTTTGCAGTGTATCCACCTCTGTCTGTGTGTGTGTGTGTGTATTTGTGTGCAGCTATTGAAAGTGGTATTGGTGAGCGAGCGAGCAAGCGCAAGCATATATGTGTGGGAAATAGAAAATCCACCCAGCCAACATCCATTCCCCCGCTCGATGCAACATTGTTAGAAGAAGCAGCGGTTGTTAAGCAGAACGAAGTGTGAACGAAGAGAGAAAGAAAGAGAGAGAAAGGAGCATAGAGAAAAGCAGCGTTCCCGAAGCTTTCTCTGTTAGTGGTTTAGTGCGTTTCAGTGTGTGTGTGTGTGTGTGTGTCTTTGCTGCAGCTCCAACAAGATAGTACAGGCCCATTTGCAGGTCGCAAAAAAGCCGGTCCCTGAGCTATACCCCGTCCGTGTGTGTCCGAGCTCCACGTGCCGTGTGTCAGACAACGCCGGAAAGATACTTCTGTTAAGAGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGCACCACCGCCTGCA] [+] EMBL BM602531 [CCGACCGGAAGTTAGTGTGTATTTGTGAGTGTGTTTGTGCGCCGTTTCGTGTGTGAAGCAAAGCTCCTCCCTCCCCTCGGAGCCACACTTCCGTTTGCCGGTTACCGTGTGCACGTTTTGCAGTGTATCCACCTCTGTCTGTGTGTGTGTGTGTGTATTTGTGTGCAGCTATTGAAAGTGGTATTGGTGAGCGAGCGAGCAAGCGCAAGCATATATGTGTGGGAAATAGAAAATCCACCCAGCCAACATCCATTCCCCCGCTCGATGCAACATTGTTAGAAGAAGCAGCGGTTGTTAAGCAGAACGAAGTGTGAACGAAGAGAGAAAGAAAGAGAGAGAAAGGAGCATAGAGAAAAGCAGCGTTCCCGAAGCTTTCTCTGTTAGTGGTTTAGTGCGTTTCAGTGTGTGTGTGTGTGTGTGTGTCTTTGCTGCAGCTCCAACAAGATAGTACAGGCCCATTTGCAGGTCGCAAAAAAGCCGGTCCCTGAGCTATACCCCGTCCGTGTGTGTCCGAGCTCCACGTGCCGTGTGTCAGACAACGCCGGAAAGATACTTCTGTTAAGAGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGCACCACCGCCTGCA] consensusID : consensus_3859#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGCCGTGTTTGTTTGGGTGCAGTGACCACTACAGTGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCGATTGTGCAAAAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAACAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGGCACCGCCGCCTCCGGCCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGC] [+] EMBL BM626603 [CCGCGGACGCGTGGGCGGACGCGTGGGGCCGTGTTTGTTTGGGTGCAGTGACCACTACAGTGTGTGCCGTATTTCTGTGTCCGTGTGTGTGTGTTCGTGTGTTCGTGTGCGATTGTGCAAAAGGGGCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGTCTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAGTGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAACAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATTTGGCGAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAAGCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACAGTCCGGCACCGCCGCCTCCGGCCGCGCTACGTCCGCAGATGGTCCCGAGACATCAGGCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3859#0 CCGAGAGCCCCGAACGACGATTCTGTCTGCTGAATTTGGCCGTGCCTGCGTCTAGGAGCG 60 consensus_3859#2 ------------------------------------------------------------ consensus_3859#1 -----------------CCGACCGGAAGTTAGTGTGTATTTGTGAGTGTGTTTGTGCGCC 43 consensus_3859#0 GTTCGCATCTCGTAA--TCCTCCTCATCCAGCCGTGCAGCCGTGTTTGTTTGGGTGCAGT 118 consensus_3859#2 ---------CCGCGG--ACGCGTGGGCGGACGCGTGGGGCCGTGTTTGTTTGGGTGCAGT 49 consensus_3859#1 GTTTCGTGTGTGAAGCAAAGCTCCTCCCTCCCCTCGGAGCCACACTTCCGTTTGC-CGGT 102 * * * *** ** * * * ** consensus_3859#0 GACCAC-TACAGTGTGTGCCGTATTTCTGTGTCCGT--GTGTGTGTGTTCGTGTGTTCGT 175 consensus_3859#2 GACCAC-TACAGTGTGTGCCGTATTTCTGTGTCCGT--GTGTGTGTGTTCGTGTGTTCGT 106 consensus_3859#1 TACCGTGTGCACGTTTTGCAGTGTATCCACCTCTGTCTGTGTGTGTGTGTGTGTATTTGT 162 *** * ** * *** ** * ** ** ** ********** **** ** ** consensus_3859#0 GTGCGATTGTGCAAAAGGG-GCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGT 234 consensus_3859#2 GTGCGATTGTGCAAAAGGG-GCTGTCACCAAATCCCATTGGTGGAAGGTGGTGCATCCGT 165 consensus_3859#1 GTGCAGCTATTGAAAGTGGTATTGGTGAGCGAGCGAGCAAGCGCAAGCATATATGTGTGG 222 **** * * *** ** ** * * * * *** * * * consensus_3859#0 CTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAG 294 consensus_3859#2 CTAGCAACTTCTTCCCCAATTCCCAGCATAAAAAAACGGGCACGAGATTGCAGGTGCAAG 225 consensus_3859#1 GAAATAGAAAATCCACCCA--GCCAACATCCATTCCCCCGCTCGATGCAACATTGTTAGA 280 * * * * ** * *** *** * * ** *** ** * consensus_3859#0 TGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAAA 354 consensus_3859#2 TGCAGCGTGACAGCGTGAACACACAGTAAAAAGTGCAGTGAACAAAAAAAAAAAAAAAA- 284 consensus_3859#1 AGAAGC--AGCGGTTGTTAAGCAGAACGAAGTGTG-AACGAAGAGAGAAAGAAAGAGAG- 336 * *** * * * ** * ** *** * *** * * *** *** * * consensus_3859#0 CAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATT 414 consensus_3859#2 CAAAAAATACCGAAGTGCGTGTGAGTGTGTGCGTGTAAAAGTGTGAAATAAAACCACATT 344 consensus_3859#1 -AGAAAGGAGCATAGAGAAAAGCAGCGTTCCCG-----AAGCTT---------TCTCTGT 381 * *** * * ** * ** ** ** *** * * * * consensus_3859#0 TGGCGAAATATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAA 474 consensus_3859#2 TGGCGAA-TATTACGGGCAGCGACCAATTGTGCAAAGGCAAAAAAGCATAAACCAACCAA 403 consensus_3859#1 TAGTGGTTTAGT-------GCGTTTCAGTGTGTGTGTGTGTGTGTGTGTCTTTGCTGCAG 434 * * * ** * *** * **** * * * ** consensus_3859#0 GCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACA 534 consensus_3859#2 GCCGGGCACAGAAGTGACCAAATATTCACGTGCAGTGCAACATGCAGCAACCGAGATACA 463 consensus_3859#1 CTCCAACAAGATAGTACAGGCCCATTTGCAGGTCGCAAAAAAGCCGGTCCCTGAGCTATA 494 * ** *** *** * * * ** * * * * *** ** * consensus_3859#0 GTCCGGCACCGCCGCCTCCGG---GCGCGCTACGTCCG-CAGATGGTCCCGAGACATCAG 590 consensus_3859#2 GTCCGGCACCGCCGCCTCCGG---CCGCGCTACGTCCG-CAGATGGTCCCGAGACATCAG 519 consensus_3859#1 CCCCGTCCGTGT-GTGTCCGAGCTCCACGTGCCGTGTGTCAGACAACGCCGGAAAGATAC 553 *** * * * **** * ** *** * **** *** * * consensus_3859#0 GCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACC-------------- 636 consensus_3859#2 GCAGTACCGAACGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGC------- 572 consensus_3859#1 TTC-TGTTAAGAGGAAGTACTACAGCCGCGCCTCGTAGCGCCTACCCTGGAGCACCACCG 612 * * ********************************** consensus_3859#0 ------ consensus_3859#2 ------ consensus_3859#1 CCTGCA 618 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||