These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1154 fasta sequence [CCGATCGGCCGTCTGGGGGCACTGTGAAATAACGATGAAATATATTGGCGGCTTGGACCCCGAACCGCTACCACTAATGGATCTCTGCAGGCGCGTCATCCGCCAGAGAATCGGCCGGACGTATCTAGAGGAACGTATACCAAACCTAGCCCTGCCGCAATCGATGAAAACCTATCTATTGTACCGGGATCGAAGATAATAAAACGTCCGACAAGCGGCTGCAGACATGCTATAGGAGAAGGGAAGGGGCTTCGATGAGTCTAACAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATAACACACACATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCACACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAGTGCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGCTAACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTTGTTTGTTAGTTTTGTTTTGCTTTACGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATATCGGGTCTTGGGTCTCTGTAGCTATTGCGATTTAGAAGGATAGTAGCTCTAACTACTACCGTCTCACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACGATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTGCCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTTTATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCACATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGATTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCTGTACTACTTTGTGATAAAGATAAAATAGTGTAACAACATTCAAAAAAAAAAAAAAAAAAATGGTAATGTGGCCC] [+] EMBL BM602446 [CCGATCGGCCGTCTGGGGGCACTGTGAAATAACGATGAAATATATTGGCGGCTTGGACCCCGAACCGCTACCACTAATGGATCTCTGCAGGCGCGTCATCCGCCAGAGAATCGGCCGGACGTATCTAGAGGAACGTATACCAAACCTAGCCCTGCCGCAATCGATGAAAACCTATCTATTGTACCGGGATCGAAGATAATAAAACGTCCGACAAGCGGCTGCAGACATGCTATAGGAGAAGGGAAGGGGCTTCGATGAGTCTAACAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATAACACACACATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCACACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAGTGCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGCTAACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTTGTTTGTTAGTTTTGTTTTGCTTTACGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATATCGGGTCTTGGGTCTCTGTAGCTATTGCGATTTAGAAGGAT ] [+] EMBL CNS08HGA [ CAAGCGGCTGCAGACATGCTATAGAAGAAGGGAAGGGGCTTCGATGAGTCTAACAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATAACACACACATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCACACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAGTGCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGCTAACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAG TTTTTTTGTTTGTTAGTTTTGTTTTGCTTTGCGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATCTCGGGTCTTGGGTCTCTGTAGCTACTGCGATTTAGAAGGATAGTAGCTCTAACTACTACCGTCTCACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACGATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTGCCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTTTATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCACATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGATTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCTGTACTACTTTGTGATAAAGATAAAATAGTGTAACAACATTCAAAAAAAAAAAAAAAAAAATGGTAATGTGGCCC] consensusID : consensus_3861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence [AGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAAACGTCCCACAAGCGGCTGCAGACATGCTATAGAAGAAGGGAAGGGGCTTCGATGAGTCTAAAAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATTATAAAAAAATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCAAACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAAGTCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGTATACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTGTTTGTTAGTTTTGTTTTGCTTTGCGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATCTCGGGTCTTGGGTCTCTGTAGCTACTGCGATTTAGAAGGATAGTAGCTCTAACTACTACCCTCTAACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACGATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTGCCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTTTATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCACATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGATTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCTGTACTACTTTGTGATAAAGATA] [-] EMBL CNS08HGB [AGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTGGAAAACGTCCCACAAGCGGCTGCAGACATGCTATAGAAGAAGGGAAGGGGCTTCGATGAGTCTAAAAAGGGCGAAACACCATCATCACCATGGAAAACGACAGCAAACATTATAAAAAAATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACAGAGCAACCACCAAACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAAGTCTTCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCGATAATGCGTATACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTGTTTGTTAGTTTTGTTTTGCTTTGCGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTTATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAATCTCGGGTCTTGGGTCTCTGTAGCTACTGCGATTTAGAAGGATAGTAGCTCTAACTACTACCCTCTAACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACGATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTGCCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTTTATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCACATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGATTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCTGTACTACTTTGTGATAAAGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3861#0 CCGATCGGCCGTCTGGGGGCACTGTGAAATAACGATGAAATATATTGGCGGCTTGGACCC 60 consensus_3861#1 ------------------------------------------------------------ consensus_3861#0 CGAACCGCTACCACTAATGGATCTCTGCAGGCGCGTCATCCGCCAGAGAATCGGCCGGAC 120 consensus_3861#1 ------------------------------------------------------------ consensus_3861#0 GTATCTAGAGGAACGTATACCAAACCTAGCCCTGCCGCAATCGATGAAAACCTATCTATT 180 consensus_3861#1 -----------------------------AGCTGCGGAATTCCTCGAGAACTG--TTGGC 29 **** * * ** ** *** * consensus_3861#0 GTACCGGGATCGAAGATAATAAAACGTCCGACAAGCGGCTGCAGACATGCTATAGGAGAA 240 consensus_3861#1 CTACTGG-------------AAAACGTCCCACAAGCGGCTGCAGACATGCTATAGAAGAA 76 *** ** ********* ************************* **** consensus_3861#0 GGGAAGGGGCTTCGATGAGTCTAACAAGGGCGAAACACCATCATCACCATGGAAAACGAC 300 consensus_3861#1 GGGAAGGGGCTTCGATGAGTCTAAAAAGGGCGAAACACCATCATCACCATGGAAAACGAC 136 ************************ *********************************** consensus_3861#0 AGCAAACATAACACACACATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACA 360 consensus_3861#1 AGCAAACATTATAAAAAAATACACACCTCCACGAAAAATGTTCAACCGAATCCATCAACA 196 ********* * * * * ****************************************** consensus_3861#0 GAGCAACCACCACACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAGTGCT 420 consensus_3861#1 GAGCAACCACCAAACAACATCCTCCCGGCGATGCATGCGTTCGTCATGAAGTGTAAGTCT 256 ************ ****************************************** ** consensus_3861#0 TCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCG 480 consensus_3861#1 TCGCCGAGTGGAGGTATTCTTCTTGTATTCTGATTTTGGCTTCGTCTTCATCAACCGCCG 316 ************************************************************ consensus_3861#0 ATAATGCGCTAACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTTTGT 540 consensus_3861#1 ATAATGCGTATACGCATCATCCTCCAGTAATGTGCCAGCCAGCGATCGAGTTTTTTT-GT 375 ******** ********************************************** ** consensus_3861#0 TTGTTAGTTTTGTTTTGCTTTACGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTT 600 consensus_3861#1 TTGTTAGTTTTGTTTTGCTTTGCGGTTTCTCGTCTATCGCCAGCCATTTGCGTGCAAGTT 435 ********************* ************************************** consensus_3861#0 ATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAAT 660 consensus_3861#1 ATGTGCACTGTTAGAAACAATAGTGTGTGTAGATGGTGATAAAGAACACAAGCTCACAAT 495 ************************************************************ consensus_3861#0 ATCGGGTCTTGGGTCTCTGTAGCTATTGCGATTTAGAAGGATAGTAGCTCTAACTACTAC 720 consensus_3861#1 CTCGGGTCTTGGGTCTCTGTAGCTACTGCGATTTAGAAGGATAGTAGCTCTAACTACTAC 555 ************************ ********************************** consensus_3861#0 CGTCTCACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACG 780 consensus_3861#1 CCTCTAACTTAGACAATGGGAAGCAGAGGTCGAGCTCGAATTCCAAATCCTAATTTTACG 615 * *** ****************************************************** consensus_3861#0 ATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTG 840 consensus_3861#1 ATCATAACACCGACCAAGGCAGCACGGCTATTAAGTATAGATTAATAATTGTGTCCACTG 675 ************************************************************ consensus_3861#0 CCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTT 900 consensus_3861#1 CCTATCCCGGCGAAGATTACGATAGCTTACTATTACACTTAATTTTATTGGACTAATTTT 735 ************************************************************ consensus_3861#0 TATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCA 960 consensus_3861#1 TATGGACATTTTAGGACGTGGTAAAATATTAAATTTGCGCTGCATTAGACAAGCATAGCA 795 ************************************************************ consensus_3861#0 CATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGA 1020 consensus_3861#1 CATGAGTCAGAGAAAACAAAACATCAATCAGCTCGAAGTCTTGACCTGAAAGCATCGTGA 855 ************************************************************ consensus_3861#0 TTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCT 1080 consensus_3861#1 TTATTTGCTGGTACGATCCGTGTAGTCAGACCGTATAGTTTTGATTTATTTCACAATCCT 915 ************************************************************ consensus_3861#0 GTACTACTTTGTGATAAAGATAAAATAGTGTAACAACATTCAAAAAAAAAAAAAAAAAAA 1140 consensus_3861#1 GTACTACTTTGTGATAAAGATA-------------------------------------- 937 ********************** consensus_3861#0 TGGTAATGTGGCCC 1154 consensus_3861#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||