These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [CCCGAGGTTTCGCGAGCGTTGAATATGCTGTCACATTGGAAACTGACCCAAAAACCACTACTGTAAAGGTGTTTAAATTTGATCGAAAATCGTGTTGGTCTATTGGAAAATTCCTATTACTTATCGTTTGATGCACAAGACTTTATATTTTAGCAGTTTTTTTTTTGTAAAATAAATATAAAAAAAACCTCAAAACTTGTTTATCGCTACCTCTAATCACTGATTAGGGAGAACGAACATGCAAATCGAAGGTGTTAGTGAAGGGTAGAACGATCTGAGTGTGTTGTGTGTTGTGTGATTAGTTTATAATGGCCGATCGCGTAAAACCAGTGTGTGCAAACGAACGCGATACCCATAGCGAAGAACGAATAGGACTAACCGATACCGATCTTGCATACAACATGCCAAACGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAACTCTTGTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTNAG] [+] EMBL AL695168 [CCCGAGGTTTCGCGAGCGTTGAATATGCTGTCACATTGGAAACTGACCCAAAAACCACTACTGTAAAGGTGTTTAAATTTGATCGAAAATCGTGTTGGTCTATTGGAAAATTCCTATTACTTATCGTTTGATGCACAAGACTTTATATTTTAGCAGTTTTTTTTTTGTAAAATAAATATAAAAAAAACCTCAAAACTTGTTTATCGCTACCTCTAATCACTGATTAGGGAGAACGAACATGCAAATCGAAGGTGTTAGTGAAGGGTAGAACGATCTGAGTGTGTTGTGTGTTGTGTGATTAGTTTATAATGGCCGATCGCGTAAAACCAGTGTGTGCAAACGAACGCGATACCCATAGCGAAGAACGAATAGGACTAACCGATACCGATCTTGCATACAACATGCCAAACGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAACTCTTGTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTNAG] consensusID : consensus_3867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [TCCCCCGAGGTTACAGGAACAGGGCAACTTGCTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTTAGTGTGTGGTATTTTAGCGCATTAGTGAGAAAGGAAGAAGATTCGAACAGTTTACACAACAGCGTACTGTGAAAAAAAGAAGAAGATTTAAATAGTAACATATATTAGAGATCATCGTAAAGGTGTAGTAGAAAATACCCAAGAACGAGGGGAGGAACGATCGAAGCGGGGCCCGTCCTTAAATTCCGTGCCGCTTTCGGTTTCGGTGCTGTACAATGAGACTGTCCTTGCCTTCCACACAGTGATGAGAAGAATTGTGGGAAAGATTGATTGCCAGCTTTTGCGAGTGTGTTTTATNTTTGATTTCCATTTTTCTCTCCCCTTCTTCCGTGTTCCGGCAATAAACGACCAATTAAACAAGCAATAGTAACAATGAAGATAAGAANACACNNCCAAACACACACACA] [+] EMBL AL932808 [TCCCCCGAGGTTACAGGAACAGGGCAACTTGCTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTTAGTGTGTGGTATTTTAGCGCATTAGTGAGAAAGGAAGAAGATTCGAACAGTTTACACAACAGCGTACTGTGAAAAAAAGAAGAAGATTTAAATAGTAACATATATTAGAGATCATCGTAAAGGTGTAGTAGAAAATACCCAAGAACGAGGGGAGGAACGATCGAAGCGGGGCCCGTCCTTAAATTCCGTGCCGCTTTCGGTTTCGGTGCTGTACAATGAGACTGTCCTTGCCTTCCACACAGTGATGAGAAGAATTGTGGGAAAGATTGATTGCCAGCTTTTGCGAGTGTGTTTTATNTTTGATTTCCATTTTTCTCTCCCCTTCTTCCGTGTTCCGGCAATAAACGACCAATTAAACAAGCAATAGTAACAATGAAGATAAGAANACACNNCCAAACACACACACA] consensusID : consensus_3867#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [CGAAGGGGTCAGTGAAGGGTAGAACGATCTGAGTGTGTCAGTTGTGTTGTGTGATCAGTCCATAATGGAGATCGCGTAAAAAAGTGGGCGCAAACGAACGCGATAAAATAGCGAAGAAGAATAGGACTAACCGATACCGATCTTGATAGAAATGCCAAAGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAATCTTGTTGGTGGTAAAACACAC] [+] EMBL BX612217 [CGAAGGGGTCAGTGAAGGGTAGAACGATCTGAGTGTGTCAGTTGTGTTGTGTGATCAGTCCATAATGGAGATCGCGTAAAAAAGTGGGCGCAAACGAACGCGATAAAATAGCGAAGAAGAATAGGACTAACCGATACCGATCTTGATAGAAATGCCAAAGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGAACAGGGGCAATCTTGTTGGTGGTAAAACACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3867#0 -CCCGAGGTTTCGCGAGCGTTGAATATGCTGTCACATTGGAAACTGACCCAAAAACCACT 59 consensus_3867#2 ------------------------------------------------------------ consensus_3867#1 TCCCCCGAGGTTACAGGAACAGGGCAACTTGCTTGGTGGTAAA---ACACACGATCAATC 57 consensus_3867#0 ACTGTAAAGGTGTTTAAATTTGATCGAAAATCGTGTTGGTCTATTGGAAAATTCCTATTA 119 consensus_3867#2 ------------------------------------------------------------ consensus_3867#1 CCAAAAAACAATTCACGTGTTGATCGTATTTTGGAAAAACTGTATTTTAGTGTGTGGTAT 117 consensus_3867#0 CTTATCGT-TTGATGCACAAGACTTTATATTTTAGCAGTTTTTTTTTTGTAAAATAAATA 178 consensus_3867#2 ------------------------------------------------------------ consensus_3867#1 TTTAGCGCATTAGTGAGAAAGGAAGAAGATTCGAACAGTTTACACAAC---AGCGTACTG 174 consensus_3867#0 TAAAAAAAACCTCAAAACTTGTTTATCGCTACCTCTAATCACTGATTAGGGAGAACGAAC 238 consensus_3867#2 ------------------------------------------------------------ consensus_3867#1 TGAAAAAAAGAAGAAGATTTAAATAGTAACATATATTAGAGATCATCGTAAAGGTGTAGT 234 consensus_3867#0 ATGCAAATCGAAGGTGTTAGTGAAGGGTAGAACGATCTGAGTGTGTTG--TGTGTTGTGT 296 consensus_3867#2 --------CGAAGGGGTCAGTGAAGGGTAGAACGATCTGAGTGTGTCAGTTGTGTTGTGT 52 consensus_3867#1 AGAAAATACCCAAGAACGAGGGGAGGAACGATCGAAGCGGGGCCCGTCCTTAAATTCCGT 294 * * * ** * *** ** *** * * * ** ** consensus_3867#0 GATTAGTTTATAATGGCCGAT-CGCGTAAAACCAGTGTGTGC-----AAACGAACGCGAT 350 consensus_3867#2 GATCAGTCCATAATGGA-GAT-CGCGTAAAAA-AGTGGGCGC-----AAACGAACGCGAT 104 consensus_3867#1 GCCGCTTTCGGTTTCGGTGCTGTACAATGAGACTGTCCTTGCCTTCCACACAGTGATGAG 354 * * * * * * * * ** ** * ** ** consensus_3867#0 ACCCATAGCGAAGAACGAATAGGACTAACCGATACCGATCT--TGCATACAACATGCCAA 408 consensus_3867#2 AAA-ATAGCGAAGAA-GAATAGGACTAACCGATACCGATCT--TG-ATAGAA-ATGCCAA 158 consensus_3867#1 AAGAATTGTGGGAAAGATTGATTGCCAGCTTTTGCGAGTGTGTTTTATNTTTGATTTCCA 414 * ** * * ** * * * * * * * * * ** ** * * consensus_3867#0 ACGTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGA 468 consensus_3867#2 A-GTTTATAAAACTTGTAGCGATAGTAGGTAGTAGCAGGATAGCAGTAGAAGCGGCAGGA 217 consensus_3867#1 TTTTTCTCTCCCCTTCTTCCGTGTTCCGGCAATAAACGACCAATTAAACAAGCAATAGTA 474 ** *** * ** ** * ** * * * **** ** * consensus_3867#0 ACAGGGGCAACTCTTGTTGGTGGTAAAACACACGATCAATCCCAAAAAACAATTCACGTG 528 consensus_3867#2 ACAGGGGCAA-TCTTGTTGGTGGTAAAACACAC--------------------------- 249 consensus_3867#1 ACAATGAAGATAAGAANACACNNCCAAACACACACACA---------------------- 512 *** * * ******** consensus_3867#0 TTGATCGTATTTTGGAAAAACTGTATTTNAG 559 consensus_3867#2 ------------------------------- consensus_3867#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||