Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3873 cluster # 3873       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3873#0 length = 1024 sequences # 1  
consensus_3873#1 length = 903 sequences # 2  

consensusID : consensus_3873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1024
fasta sequence
                              [CAGAATTCCCCGCAGGTTAATCATTGTCCGGGCGGCCGAAATGTTNATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGACTGTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTTCCTGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATTCAAACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANCCCGAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACACAGNNNAGGACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAAGGACANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAACNCCGGGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAAAACAGAAAAGAATNNNCAAGGAAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACAATGTGCNACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANANACNAGNGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACAANGAGCAAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAAGANCNGTANTAACTCAACCACCGAAAACAAACGACTTACACCACTGNAAGCAACTATGTAAAACACCAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAANAATTGNACAA]

[+] EMBL AL695314             [CAGAATTCCCCGCAGGTTAATCATTGTCCGGGCGGCCGAAATGTTNATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGACTGTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTTCCTGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATTCAAACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANCCCGAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACACAGNNNAGGACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAAGGACANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAACNCCGGGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAAAACAGAAAAGAATNNNCAAGGAAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACAATGTGCNACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANANACNAGNGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACAANGAGCAAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAAGANCNGTANTAACTCAACCACCGAAAACAAACGACTTACACCACTGNAAGCAACTATGTAAAACACCAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAANAATTGNACAA]


>consensus_3873#0 CAGAATTCCCCGCAGGTTAATCATTGTCCGGGCGGCCGAAATGTTNATGCGCTTTCTGCG CAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCGAT GTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGCGC GCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGACT GTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTTCC TGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATTCA AACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANCCC GAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACACAGNNNAG GACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAAGGAC ANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAACNCCG GGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAAAACAGAAAAGAATNNNCAAGG AAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACAATGTGC NACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANANACNAG NGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACAANGAGC AAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAAGANCNG TANTAACTCAACCACCGAAAACAAACGACTTACACCACTGNAAGCAACTATGTAAAACAC CAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAANAATTGN ACAA



consensusID : consensus_3873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 903
fasta sequence
                              [ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGTTGCGCCAGGACGGCGCCACCGATCTGTTAGTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTTCGCGCGGCGTCGCACTCGACCGTGCGATCAAATCGCCCCACTGCGACCCGAACGACATCCTGTTCCTGATCGACGTGGACATGGTGTTCACGGTCGAGTCGCTCGACCGCATCCGATTCAACGTGATCCGCCACCGGCAGATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATCCTCGCACCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTCGGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCACTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTCGAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGANGAGCTCGCCATCTTCCGTGCGCCCGACCCCGTCGCTGGTGCACATCTTCCACCCGATTCATTGTGATACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACACGATCGGCAG]

[+] EMBL BX621113             [ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGTTGCGCCAGGACGGCGCCACCGATCTGTTAGTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTTCGCGCGGCGTCGCACTCGACCGTGCGATCAAATCGCCCCACTGCGACCCGAACGACATCCTGTTCCTGATCGACGTGGACATGGTGTTCACGGTCGAGTCGCTCGACCGCATCCGATTCAACGTGATCCGCCACCGGCAGATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATCCTCGCACCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTCGGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCACTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTCGAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGANGAGCTCGCCATCTTCCGTGCGCCCG                                                                                                        ]
[+] EMBL BM632643             [                                                                                                                                                                                                                                                                                                                                          ccgCGATTCAACGTGATCCGCCACCGGCAGATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATTCTCGCACCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTCGGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATCGCACTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTCGAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGAGGAGCTCGCCATCTTCCGTGCGCCCGACCCCGTCGCTGGTGCACATCTTCCACCCGATTCATTGTGATACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACACGATCGGCAG]


>consensus_3873#1 ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTGCGCAAC TACGAGGAGGTCGCGTTGCGCCAGGACGGCGCCACCGATCTGTTAGTGTCGATGTATGTC GAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCGGGCGCGCTATCCG ACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTTCGCGCGGCGTCGCACTCGAC CGTGCGATCAAATCGCCCCACTGCGACCCGAACGACATCCTGTTCCTGATCGACGTGGAC ATGGTGTTCACGGTCGAGTCGCTCGACCGCATCCGATTCAACGTGATCCGCCACCGGCAG ATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATCCTCGCA CCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGG CCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTC GGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTC AGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCA CTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTC GAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGANGAGCTC GCCATCTTCCGTGCGCCCGACCCCGTCGCTGGTGCACATCTTCCACCCGATTCATTGTGA TACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACACGATCGG CAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3873#0      CAGAATTCCCCGCAGGTTA-ATCATTGTCCGGGCGG-CCGAAATGTTNATGCGCTTTCTG 58
consensus_3873#1      ------ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTG 54
                              *   * *** * * ************** ****** *** ************

consensus_3873#0      CGCAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCG 118
consensus_3873#1      CGCAACTACGAGGAGGTCGCG-TTGCGCCAGGACG-GCGCCACCGATCTGTTAG-TGTCG 111
                      ********************* ************* ****************** *****

consensus_3873#0      ATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGC 178
consensus_3873#1      ATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGC-GGGC 170
                      ******************************************************* ****

consensus_3873#0      GCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGA 238
consensus_3873#1      GCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTT--CGCGCGG- 227
                      ************************************************ *  ******* 

consensus_3873#0      CTGTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTT 298
consensus_3873#1      -CGTCG-CACTCGACCGTGCGATCAAATCGCCCCACTGC-GACCCGAACGACATCCTGTT 284
                        **** ******* *************** ******** ***********   * ****

consensus_3873#0      CCTGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATT 358
consensus_3873#1      CCTGATCGACGTGGACATGGTGTTCAC-GGTCGAGT----CGCTCGACCGC-ATCCGATT 338
                      ********* ***************** *******     **    ** ** ********

consensus_3873#0      CAAACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANC 418
consensus_3873#1      CAA-CGTGATCCGCCACC-GGCAGATCTACCTGCCGATCGT-GTTCAG-CGAGTACGATC 394
                      *** ************** * ************ ******* ****** ********* *

consensus_3873#0      C-CGAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACA-CAGN 476
consensus_3873#1      CGCGCGCGCCCAGCACTATCCTCGCA---CCGGGCTGGACGTCAGCCACGACCGAGCGGC 451
                      * ** **   *** **    *  **    *  *     **    * ** * *  * * * 

consensus_3873#0      NNAGGACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAA 536
consensus_3873#1      CGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGT--CCCGTACCGGAT 509
                        * * *    ** ** ** *  *  **  * **  *  *   **     *  **  ** 

consensus_3873#0      GGACANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAAC 596
consensus_3873#1      ---CACGA--ACGAGAACGGGTACTTCCGCCAG---TTCGGGTACGGGCTGGTCGGCATC 561
                         ** **   *** * * **       ****      * *    ***   * * * * *

consensus_3873#0      NCCGGGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAA--AACAGAAAAGAATNN 654
consensus_3873#1      TACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGG 621
                        *  *    *    *         *    ***   *  *  *   ***  ** *  *  

consensus_3873#0      NCAAGGAAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACA 714
consensus_3873#1      GGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCACTG--AACCAGCGCGGCAACC 679
                           * *  **  * *   * *  * **    *  * * *    ****     *  ** 

consensus_3873#0      ATGTGCNACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANA 774
consensus_3873#1      AGCGGCTGCAAGCGAT-TGCCGACGGGC--GGTGGGATCCGTTCGAGCCGGCGGCGAACG 736
                      *   **  **     * * *    **          * **  *  * *   *     *  

consensus_3873#0      NACNAGNGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACA 834
consensus_3873#1      GACCGGCATCGTCGACGGTGCCGCCA----------CCCCCGAGCGANGAGCTCGCCATC 786
                       **  *  *   * **    *    *          *     *  **  *  *    *  

consensus_3873#0      ANGAGCAAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAA 894
consensus_3873#1      TTCCGTGCGCCCGACCC-CGTCGCTGGTGCACATC-----TTCCACCCGATTCATTGTGA 840
                          *       ** *     *     *  ****         ** **   ***     *

consensus_3873#0      GANCNGTANTAACTCAACCACCGAAAACAAACGACTTA-CACCACTGNAAGCAACTATGT 953
consensus_3873#1      TACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACA-CGATCG 899
                       *   *     *     **    * ** *   * **   *****  *  * ** * **  

consensus_3873#0      AAAACACCAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAA 1013
consensus_3873#1      GCAG-------------------------------------------------------- 903
                        *                                                         

consensus_3873#0      NAATTGNACAA 1024
consensus_3873#1      -----------
                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)