These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1024 fasta sequence [CAGAATTCCCCGCAGGTTAATCATTGTCCGGGCGGCCGAAATGTTNATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGACTGTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTTCCTGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATTCAAACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANCCCGAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACACAGNNNAGGACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAAGGACANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAACNCCGGGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAAAACAGAAAAGAATNNNCAAGGAAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACAATGTGCNACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANANACNAGNGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACAANGAGCAAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAAGANCNGTANTAACTCAACCACCGAAAACAAACGACTTACACCACTGNAAGCAACTATGTAAAACACCAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAANAATTGNACAA] [+] EMBL AL695314 [CAGAATTCCCCGCAGGTTAATCATTGTCCGGGCGGCCGAAATGTTNATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGACTGTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTTCCTGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATTCAAACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANCCCGAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACACAGNNNAGGACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAAGGACANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAACNCCGGGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAAAACAGAAAAGAATNNNCAAGGAAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACAATGTGCNACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANANACNAGNGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACAANGAGCAAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAAGANCNGTANTAACTCAACCACCGAAAACAAACGACTTACACCACTGNAAGCAACTATGTAAAACACCAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAANAATTGNACAA] consensusID : consensus_3873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 903 fasta sequence [ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGTTGCGCCAGGACGGCGCCACCGATCTGTTAGTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTTCGCGCGGCGTCGCACTCGACCGTGCGATCAAATCGCCCCACTGCGACCCGAACGACATCCTGTTCCTGATCGACGTGGACATGGTGTTCACGGTCGAGTCGCTCGACCGCATCCGATTCAACGTGATCCGCCACCGGCAGATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATCCTCGCACCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTCGGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCACTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTCGAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGANGAGCTCGCCATCTTCCGTGCGCCCGACCCCGTCGCTGGTGCACATCTTCCACCCGATTCATTGTGATACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACACGATCGGCAG] [+] EMBL BX621113 [ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGTTGCGCCAGGACGGCGCCACCGATCTGTTAGTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTTCGCGCGGCGTCGCACTCGACCGTGCGATCAAATCGCCCCACTGCGACCCGAACGACATCCTGTTCCTGATCGACGTGGACATGGTGTTCACGGTCGAGTCGCTCGACCGCATCCGATTCAACGTGATCCGCCACCGGCAGATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATCCTCGCACCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTCGGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCACTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTCGAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGANGAGCTCGCCATCTTCCGTGCGCCCG ] [+] EMBL BM632643 [ ccgCGATTCAACGTGATCCGCCACCGGCAGATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATTCTCGCACCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTCGGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATCGCACTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTCGAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGAGGAGCTCGCCATCTTCCGTGCGCCCGACCCCGTCGCTGGTGCACATCTTCCACCCGATTCATTGTGATACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACACGATCGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3873#0 CAGAATTCCCCGCAGGTTA-ATCATTGTCCGGGCGG-CCGAAATGTTNATGCGCTTTCTG 58 consensus_3873#1 ------ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTG 54 * * *** * * ************** ****** *** ************ consensus_3873#0 CGCAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCG 118 consensus_3873#1 CGCAACTACGAGGAGGTCGCG-TTGCGCCAGGACG-GCGCCACCGATCTGTTAG-TGTCG 111 ********************* ************* ****************** ***** consensus_3873#0 ATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGC 178 consensus_3873#1 ATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGC-GGGC 170 ******************************************************* **** consensus_3873#0 GCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGA 238 consensus_3873#1 GCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTT--CGCGCGG- 227 ************************************************ * ******* consensus_3873#0 CTGTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTT 298 consensus_3873#1 -CGTCG-CACTCGACCGTGCGATCAAATCGCCCCACTGC-GACCCGAACGACATCCTGTT 284 **** ******* *************** ******** *********** * **** consensus_3873#0 CCTGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATT 358 consensus_3873#1 CCTGATCGACGTGGACATGGTGTTCAC-GGTCGAGT----CGCTCGACCGC-ATCCGATT 338 ********* ***************** ******* ** ** ** ******** consensus_3873#0 CAAACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANC 418 consensus_3873#1 CAA-CGTGATCCGCCACC-GGCAGATCTACCTGCCGATCGT-GTTCAG-CGAGTACGATC 394 *** ************** * ************ ******* ****** ********* * consensus_3873#0 C-CGAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACA-CAGN 476 consensus_3873#1 CGCGCGCGCCCAGCACTATCCTCGCA---CCGGGCTGGACGTCAGCCACGACCGAGCGGC 451 * ** ** *** ** * ** * * ** * ** * * * * * consensus_3873#0 NNAGGACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAA 536 consensus_3873#1 CGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGT--CCCGTACCGGAT 509 * * * ** ** ** * * ** * ** * * ** * ** ** consensus_3873#0 GGACANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAAC 596 consensus_3873#1 ---CACGA--ACGAGAACGGGTACTTCCGCCAG---TTCGGGTACGGGCTGGTCGGCATC 561 ** ** *** * * ** **** * * *** * * * * * consensus_3873#0 NCCGGGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAA--AACAGAAAAGAATNN 654 consensus_3873#1 TACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGG 621 * * * * * *** * * * *** ** * * consensus_3873#0 NCAAGGAAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACA 714 consensus_3873#1 GGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCACTG--AACCAGCGCGGCAACC 679 * * ** * * * * * ** * * * * **** * ** consensus_3873#0 ATGTGCNACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANA 774 consensus_3873#1 AGCGGCTGCAAGCGAT-TGCCGACGGGC--GGTGGGATCCGTTCGAGCCGGCGGCGAACG 736 * ** ** * * * ** * ** * * * * * consensus_3873#0 NACNAGNGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACA 834 consensus_3873#1 GACCGGCATCGTCGACGGTGCCGCCA----------CCCCCGAGCGANGAGCTCGCCATC 786 ** * * * ** * * * * ** * * * consensus_3873#0 ANGAGCAAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAA 894 consensus_3873#1 TTCCGTGCGCCCGACCC-CGTCGCTGGTGCACATC-----TTCCACCCGATTCATTGTGA 840 * ** * * * **** ** ** *** * consensus_3873#0 GANCNGTANTAACTCAACCACCGAAAACAAACGACTTA-CACCACTGNAAGCAACTATGT 953 consensus_3873#1 TACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACA-CGATCG 899 * * * ** * ** * * ** ***** * * ** * ** consensus_3873#0 AAAACACCAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAA 1013 consensus_3873#1 GCAG-------------------------------------------------------- 903 * consensus_3873#0 NAATTGNACAA 1024 consensus_3873#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||