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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1024 fasta sequence
[CAGAATTCCCCGCAGGTTAATCATTGTCCGGGCGGCCGAAATGTTNATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGACTGTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTTCCTGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATTCAAACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANCCCGAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACACAGNNNAGGACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAAGGACANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAACNCCGGGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAAAACAGAAAAGAATNNNCAAGGAAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACAATGTGCNACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANANACNAGNGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACAANGAGCAAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAAGANCNGTANTAACTCAACCACCGAAAACAAACGACTTACACCACTGNAAGCAACTATGTAAAACACCAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAANAATTGNACAA]
[+] EMBL AL695314 [CAGAATTCCCCGCAGGTTAATCATTGTCCGGGCGGCCGAAATGTTNATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGACTGTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTTCCTGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATTCAAACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANCCCGAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACACAGNNNAGGACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAAGGACANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAACNCCGGGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAAAACAGAAAAGAATNNNCAAGGAAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACAATGTGCNACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANANACNAGNGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACAANGAGCAAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAAGANCNGTANTAACTCAACCACCGAAAACAAACGACTTACACCACTGNAAGCAACTATGTAAAACACCAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAANAATTGNACAA]
consensusID : consensus_3873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 903 fasta sequence
[ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGTTGCGCCAGGACGGCGCCACCGATCTGTTAGTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTTCGCGCGGCGTCGCACTCGACCGTGCGATCAAATCGCCCCACTGCGACCCGAACGACATCCTGTTCCTGATCGACGTGGACATGGTGTTCACGGTCGAGTCGCTCGACCGCATCCGATTCAACGTGATCCGCCACCGGCAGATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATCCTCGCACCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTCGGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCACTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTCGAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGANGAGCTCGCCATCTTCCGTGCGCCCGACCCCGTCGCTGGTGCACATCTTCCACCCGATTCATTGTGATACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACACGATCGGCAG]
[+] EMBL BX621113 [ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTGCGCAACTACGAGGAGGTCGCGTTGCGCCAGGACGGCGCCACCGATCTGTTAGTGTCGATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCGGGCGCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTTCGCGCGGCGTCGCACTCGACCGTGCGATCAAATCGCCCCACTGCGACCCGAACGACATCCTGTTCCTGATCGACGTGGACATGGTGTTCACGGTCGAGTCGCTCGACCGCATCCGATTCAACGTGATCCGCCACCGGCAGATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATCCTCGCACCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTCGGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCACTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTCGAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGANGAGCTCGCCATCTTCCGTGCGCCCG ]
[+] EMBL BM632643 [ ccgCGATTCAACGTGATCCGCCACCGGCAGATCTACCTGCCGATCGTGTTCAGCGAGTACGATCCGCGCGCGCCCAGCACTATTCTCGCACCGGGCTGGACGTCAGCCACGACCGAGCGGCCGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGTCCCGTACCGGATCACGAACGAGAACGGGTACTTCCGCCAGTTCGGGTACGGGCTGGTCGGCATCTACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGGGGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATCGCACTGAACCAGCGCGGCAACCAGCGGCTGCAAGCGATTGCCGACGGGCGGTGGGATCCGTTCGAGCCGGCGGCGAACGGACCGGCATCGTCGACGGTGCCGCCACCCCCGAGCGAGGAGCTCGCCATCTTCCGTGCGCCCGACCCCGTCGCTGGTGCACATCTTCCACCCGATTCATTGTGATACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACACGATCGGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3873#0 CAGAATTCCCCGCAGGTTA-ATCATTGTCCGGGCGG-CCGAAATGTTNATGCGCTTTCTG 58
consensus_3873#1 ------ATCGTACTGGTGATACCATTGTCCGGGCGGTCCGAAACGTTCATGCGCTTTCTG 54
* * *** * * ************** ****** *** ************
consensus_3873#0 CGCAACTACGAGGAGGTCGCGGTTGCGCCAGGACGTGCGCCACCGATCTGTTAGCTGTCG 118
consensus_3873#1 CGCAACTACGAGGAGGTCGCG-TTGCGCCAGGACG-GCGCCACCGATCTGTTAG-TGTCG 111
********************* ************* ****************** *****
consensus_3873#0 ATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGCTGGGC 178
consensus_3873#1 ATGTATGTCGAACCTGTCGAGACACCGATGATTGTGGCGCTGCTGGACAACTTGC-GGGC 170
******************************************************* ****
consensus_3873#0 GCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTATTACGCGCGGA 238
consensus_3873#1 GCGCTATCCGACCGCCCGCATCAACTACCTGCAGCTGTACGGGAACTTTT--CGCGCGG- 227
************************************************ * *******
consensus_3873#0 CTGTCGACACTCGAGCGTGCGATCAAATCGNCCCACTGCTGACCCGAACGAATCCTTGTT 298
consensus_3873#1 -CGTCG-CACTCGACCGTGCGATCAAATCGCCCCACTGC-GACCCGAACGACATCCTGTT 284
**** ******* *************** ******** *********** * ****
consensus_3873#0 CCTGATCGAAGTGGACATGGTGTTCACAGGTCGAGATCAGCGTCGAACAGCGATCCGATT 358
consensus_3873#1 CCTGATCGACGTGGACATGGTGTTCAC-GGTCGAGT----CGCTCGACCGC-ATCCGATT 338
********* ***************** ******* ** ** ** ********
consensus_3873#0 CAAACGTGATCCGCCACCTGNCAGATCTACCTGGCGATCGTCGTTCAGACGAGTACGANC 418
consensus_3873#1 CAA-CGTGATCCGCCACC-GGCAGATCTACCTGCCGATCGT-GTTCAG-CGAGTACGATC 394
*** ************** * ************ ******* ****** ********* *
consensus_3873#0 C-CGAGCNGACAGAACCGAACGNGCTATCCTNGAACACACCANGGNCATGGCACA-CAGN 476
consensus_3873#1 CGCGCGCGCCCAGCACTATCCTCGCA---CCGGGCTGGACGTCAGCCACGACCGAGCGGC 451
* ** ** *** ** * ** * * ** * ** * * * * *
consensus_3873#0 NNAGGACACAAACAGAACCAGANGCACGNGCCCGANAAGTAAACGGAGANCAAACAAGAA 536
consensus_3873#1 CGAAGCCGGCCACCGAGCCGGCCGACCGGCCGCGCAACTTCTCCGT--CCCGTACCGGAT 509
* * * ** ** ** * * ** * ** * * ** * ** **
consensus_3873#0 GGACANGACACCGAAANCNGGACACGAAGCCAAACAANCCGNANNGGGNCCGNCAGGAAC 596
consensus_3873#1 ---CACGA--ACGAGAACGGGTACTTCCGCCAG---TTCGGGTACGGGCTGGTCGGCATC 561
** ** *** * * ** **** * * *** * * * * *
consensus_3873#0 NCCGGGAAANANNAAAGAAAANAAAAAANAAAGANATAAAAAA--AACAGAAAAGAATNN 654
consensus_3873#1 TACAAGGCGGACCTGATGCGGCCCGACCTGAAGGGCTTCAGCACCGACATTAACGGCTGG 621
* * * * * *** * * * *** ** * *
consensus_3873#0 NCAAGGAAAAACAACGANAATATGAAAAAAAANAAAGAATTAATNACCAANAATGGGACA 714
consensus_3873#1 GGCCTGGAGGACGTCAAGTTTCTCGAGAACGTGATTGCACTG--AACCAGCGCGGCAACC 679
* * ** * * * * * ** * * * * **** * **
consensus_3873#0 ATGTGCNACACNAATTCTACATNTGGATCAAAATAAACCCACTGCAACACACACTNGANA 774
consensus_3873#1 AGCGGCTGCAAGCGAT-TGCCGACGGGC--GGTGGGATCCGTTCGAGCCGGCGGCGAACG 736
* ** ** * * * ** * ** * * * * *
consensus_3873#0 NACNAGNGTGANCNACACATCAATAAAAGAAAAACTCTNGTAAANGAAAAATTANAAACA 834
consensus_3873#1 GACCGGCATCGTCGACGGTGCCGCCA----------CCCCCGAGCGANGAGCTCGCCATC 786
** * * * ** * * * * ** * * *
consensus_3873#0 ANGAGCAAATTAGANCGANAACCACAATNTACATAAAGAGCAGCAACCANNTCAACNAAA 894
consensus_3873#1 TTCCGTGCGCCCGACCC-CGTCGCTGGTGCACATC-----TTCCACCCGATTCATTGTGA 840
* ** * * * **** ** ** *** *
consensus_3873#0 GANCNGTANTAACTCAACCACCGAAAACAAACGACTTA-CACCACTGNAAGCAACTATGT 953
consensus_3873#1 TACGAGCCTGGATGAGGCCCAGTACAAGATGTGCCTCGGCACCAAGGCGAACA-CGATCG 899
* * * ** * ** * * ** ***** * * ** * **
consensus_3873#0 AAAACACCAAGATGACTNCNGGAGGAAANAANGCAGAGCCAGNNTTNTCNAAAGACGAAA 1013
consensus_3873#1 GCAG-------------------------------------------------------- 903
*
consensus_3873#0 NAATTGNACAA 1024
consensus_3873#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||