These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGGTACGCAGCCAGAGTAGAGCGTCGTCGTGTGTGTCGATCTCGAGATCCGCTCCGGGGCTCGACTTTTTTTTTGCCTTTGGACGGCGAAAGAAGGGATTTTTGTTTCGCTTCTTCAGTTTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGTTCAATGAAAATTGTGTTTGAAAGATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAGTCGGTGCAGAAATTGAAGTAAAAAAAAAATTAAAACAAGCAGTAACGAAAACAACAAAAATCAGCCGAAAGGGCGCTGCGAAAACTTGTTCCTGCTAAACCGTTGCGCCGCCAATCCAAGCAGCCACAGTCCAGCTCCAGCAGTAGCAGCCAGGGCAGCAGCATCCAGCGCAACACTGCTCACGCTGCTCACCAGAGTGCTCCCACGTTCCCCAACGGTTCCCCCGCTGAAAGGCGCGCCAGTGTGAAAGATTCTAACGAAGCAAGCCGTGCGCTCGCTCTCTCGCTCCAACATTCACACACATACAAAAAGGTCCACACACC] [+] EMBL BM582691 [CCGGTACGCAGCCAGAGTAGAGCGTCGTCGTGTGTGTCGATCTCGAGATCCGCTCCGGGGCTCGACTTTTTTTTTGCCTTTGGACGGCGAAAGAAGGGATTTTTGTTTCGCTTCTTCAGTTTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGTTCAATGAAAATTGTGTTTGAAAGATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAGTCGGTGCAGAAATTGAAGTAAAAAAAAAATTAAAACAAGCAGTAACGAAAACAACAAAAATCAGCCGAAAGGGCGCTGCGAAAACTTGTTCCTGCTAAACCGTTGCGCCGCCAATCCAAGCAGCCACAGTCCAGCTCCAGCAGTAGCAGCCAGGGCAGCAGCATCCAGCGCAACACTGCTCACGCTGCTCACCAGAGTGCTCCCACGTTCCCCAACGGTTCCCCCGCTGAAAGGCGCGCCAGTGTGAAAGATTCTAACGAAGCAAGCCGTGCGCTCGCTCTCTCGCTCCAACATTCACACACATACAAAAAGGTCCACACACC] consensusID : consensus_3874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGGATTTTTGTTTCGCTTCTTCAGTTTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGTTCAATGAAAATTGTGTTTGAAAGGTGATTAGCTTTCGAGTGTGTGTTTTTTATATAAGTGTGGTGTGCCATTCTGGGCTAATCGCGGTGCTTGGAGGATTAATATTTCGTGATATTGTGTATTACACTCGTACGAACAGCTCCCGTGTGGTTTTGAGCCGAAAAGTGAAACAATTTCGTTTGTTTGCGTTTGCGTTGCAAGCAAAACATTTTAAACAATTATAGCAAACAATTAAAAAAAACAAAACAAAACACATATTAAAGCATAGTAGGAAGATCCAACGTGTCTTGCCAAGTGCTTCCATAGTAAAGAAAATTATTCTCTCTCTCCCCATTTGGAATAGCAGATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGT] [+] EMBL BM625381 [CCGCCCACGCGTCCGCCCACGCGTCCGGGGATTTTTGTTTCGCTTCTTCAGTTTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCGCGTTGCGTTCAATGAAAATTGTGTTTGAAAGGTGATTAGCTTTCGAGTGTGTGTTTTTTATATAAGTGTGGTGTGCCATTCTGGGCTAATCGCGGTGCTTGGAGGATTAATATTTCGTGATATTGTGTATTACACTCGTACGAACAGCTCCCGTGTGGTTTTGAGCCGAAAAGTGAAACAATTTCGTTTGTTTGCGTTTGCGTTGCAAGCAAAACATTTTAAACAATTATAGCAAACAATTAAAAAAAACAAAACAAAACACATATTAAAGCATAGTAGGAAGATCCAACGTGTCTTGCCAAGTGCTTCCATAGTAAAGAAAATTATTCTCTCTCTCCCCATTTGGAATAGCAGATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTTAGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGT] consensusID : consensus_3874#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [CCGCTCGGGGCAGTGCAAAGTGGTGTACGTTTCTGCTGCTACTGCTGCTGAGTAAGAATCGTGCCCGTTTCTCCTCCTCCTCGCTTACATTTTGTCGATGAGTGGAAAGAAAAAGTGTTTGTTTGGCGTTAAGCAGATCCCGACCAGCACGACGAGCCGTGTGTGCTGTGCAGTGGTGATTGTGATTTAGGTGTGAATTTGTGTGTGCAAATGGTGATTAAAGAAGAAGGAGAAAAAAGAATGCTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAGTCGGTGCAGAAATTGAAGTAAAAAAAGTAATAATATTGAAAACAAGCAGTAACG] [+] EMBL BM651354 [CCGCTCGGGGCAGTGCAAAGTGGTGTACGTTTCTGCTGCTACTGCTGCTGAGTAAGAATCGTGCCCGTTTCTCCTCCTCCTCGCTTACATTTTGTCGATGAGTGGAAAGAAAAAGTGTTTGTTTGGCGTTAAGCAGATCCCGACCAGCACGACGAGCCGTGTGTGCTGTGCAGTGGTGATTGTGATTTAGGTGTGAATTTGTGTGTGCAAATGGTGATTAAAGAAGAAGGAGAAAAAAGAATGCTATGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGTGTCTGTGTAGTCGGTGCAGAAATTGAAGTAAAAAAAGTAATAATATTGAAAACAAGCAGTAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3874#0 CCGGTACGCAGCCAGAGTAGAGCGTCGTCGTGTGTGTCGATCTCGAGATCCGCTCCGGGG 60 consensus_3874#2 ------------------------------------------------------------ consensus_3874#1 ------------------------------------------------------------ consensus_3874#0 CTCGACTTTTTTTTTGCCTTTGGACGGCGAAAGAAGGGATTTTTGTTTCGCTTCTTCAGT 120 consensus_3874#2 --------------CCGCTCGGGGCAGTGCAAAGTGGTGTACGT-TTCTGCTGCTACTGC 45 consensus_3874#1 --------CCGCCCACGCGTCCGCCCACGCGTCCGGGGATTTTTGTTTCGCTTCTTCAGT 52 * * * * ** * * ** *** ** * * consensus_3874#0 TTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCG-CGTTGCG 179 consensus_3874#2 TGCTGAGTAAGAATCGTGCCCGTTTCTCCTCCTCC---TCGCTTACATTTTGTCGATGAG 102 consensus_3874#1 TTTTTGATCGGATTCAGGAACATATTACCTCAATCGAATCCGATCCAGTTCG-CGTTGCG 111 * * * ** ** * * * * **** * ** * ** ** * ** ** * consensus_3874#0 TTCAATGAAAA----------TTGTGTTTGAAAGATCCCGACCAGCACGACGAGCCGTCG 229 consensus_3874#2 TGGAAAGAAAAAGTGTTTGTTTGGCGTTAAGCAGATCCCGACCAGCACGACGAGCCGT-G 161 consensus_3874#1 TTCAATGAAAA----------TTGTGTTTGAAAGGT---GATTAGCTTT-CGAGTGTGTG 157 * ** ***** * * *** ** * ** *** **** * consensus_3874#0 TGTGCTGTGCAGT--TGCTG-GTGATTTAGTAGTGAATGTG-TGTGTGTGCAAATGGTGA 285 consensus_3874#2 TGTGCTGTGCAGTGGTGATT-GTGATTTAGGTGTGAATTTG-TGTGTG--CAAATGGTGA 217 consensus_3874#1 TTTTTTATATAAGTGTGGTGTGCCATTCTGGGCTAATCGCGGTGCTTGGAGGATTAATAT 217 * * * * * ** * * *** * * * * ** ** * * * consensus_3874#0 TTAAAGAAGAAGAAGAAAAAA---GAATGTTATGCAGCCGAATGTGTCTGTG--AATGTG 340 consensus_3874#2 TTAAAGAAGAAGGAGAAAAAA---GAATGCTATGCAGCCGAATGTGTCTGTG--AATGTG 272 consensus_3874#1 TTCGTGATATTGTGTATTACACTCGTACGAACAGCTCCCGTGTGGTTTTGAGCCGAAAAG 277 ** ** * * * * * * * ** *** ** * ** * * * consensus_3874#0 TGCATCCAGT--GTCTGTGTA-GTCGGTGCAGAAATTGAAGTAAAA-AAAAAATTAAAAC 396 consensus_3874#2 TGCATCCAGT--GTCTGTGTA-GTCGGTGCAGAAATTGAAGTAAAA-AAAGTAATAATAT 328 consensus_3874#1 TGAAACAATTTCGTTTGTTTGCGTTTGCGTTGCAAGCAAAACATTTTAAACAATTATAGC 337 ** * * * * ** *** * ** * * * ** ** * *** * ** consensus_3874#0 AAGCAGT-AACGAAAACAA--CAAAAATCAGCCGAAAGGGCGCTGCGAAAACTTGTTCCT 453 consensus_3874#2 TGAAAAC-AA--GCAGTAA--CG------------------------------------- 346 consensus_3874#1 AAACAATTAAAAAAAACAAAACAAAACACATATTAAAGCATAGTAGGAAGATCCAACGTG 397 * ** * ** * consensus_3874#0 GCTAAACCGTTGCGCCGCCAATCCAAGCAGCCACAGTCCAGCTCCAGCAGTAGCAGCCAG 513 consensus_3874#2 ------------------------------------------------------------ consensus_3874#1 TCTTGCCAAGTGCTTCCATAGTAAAGAAAATTATTCTCTCTCTCCC-------CATTTGG 450 consensus_3874#0 GGCAGCAGCATCCAGCGCAACACTGCTCACGCTGCTCACCAGAGTGCTCCCACGTTCCCC 573 consensus_3874#2 ------------------------------------------------------------ consensus_3874#1 AATAGCAG-ATCCCGACCAGCACGACGAGCCGTCGTGTGCTGTGCAGTTGCTGGTGATTT 509 consensus_3874#0 AACGGTTCCCCCGCTGAAAGGCGCGCCAGTGTGAAAGATTCTAACGAAGCAAGCCGTGCG 633 consensus_3874#2 ------------------------------------------------------------ consensus_3874#1 AGTAGTGAATGTGTGTGTGTGCAAATGGTGATTAAAGAAGAAGAAGAAAAAAGAATGTTA 569 consensus_3874#0 CTCGCTCTCTCGCTCCAACATTCACACACATACAAAAAGGTCCACACACC 683 consensus_3874#2 -------------------------------------------------- consensus_3874#1 TGCAGCCGAATGTGTCTGTGAATGTGTGCATCCAGT---GTCTGTGT--- 613 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||