cluster # 3877

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Anopheles gambiae
cluster # 3877 cluster # 3877 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3877#0 length = 840 sequences # 2

consensus_3877#1 length = 483 sequences # 1

consensusID : consensus_3877#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 840
fasta sequence

                              [CCAGAATCGCCAGGATGTNAAAGCTTCAATCAAATCAGTATTGTTGATTACACATCGAGCTAACCGCGAAGCTCGCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTTTTCCCATCAGAACCCGGAACCAAAAGTGTCCATTATTTACATCACAATCAAATGCGCTCCCCCACCTACCTACTTTACACTGAAGGAGGGTTTATAAAAAAACAATAAAAAAAATGTTGTGCGATGAAATTACCTGCACACATGCCAGCAGCGTGGGTTGTAACACAAGCCCCACATGCTTTGCCGCGCATATGGGGAACATGTGGCATCGGCCAAGAGTGTTGGGCAGGTGCGCGGGCTATATTACGTTCAAATTTCATCAACCCGTTCGCGCGTCACGTGCGGTTTTGGTTGCGAATTACTGCGGAACGCAGGAACTAATTTCGATCTCATATGAAATGCACCGGAAGAGTGATGTGTGCGCTCTACTGCTATGCCGTATAATCCCTTTTTTGGGGCGCACACACGAGCGAGGTAGGAAGAAAAACAAGCCCCAACAAATTCAGTTGCCAAAATTTCAAAGCATACGCGGGCAGATGATAAAGCCGGACACATGCGATGGATTTGTGTGTGTGTGTGTGTGAGAGAGCGTCGTTTTTATCACCCTTTTTGAGCGCGCGAACGTGTGCTCCCGCCCCTATTCGCTCTGGACAGTTGAAGAAGGAAAGGTGGAAGGTATCACATCCGGCTCGGGCACACCGCGTCCGAGTTCCCTCCGGTTTTTGGTGGCGGTTCGTCACTGCCGAGTAATTAGCATTTAAACAAAATCATCAT]

[+] EMBL AL696891             [CCAGAATCGCCAGGATGTNAAAGCTTCAATCAAATCAGTATTGTTGATTACACATCGAGCTAACCGCGAAGCTCGCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTTTTCCCATCAGAACCCGGAACCAAAAGTGTCCATTATTTACATCACAATCAAATGCGCTCCCCCACCTACCTACTTTACACTGAAGGAGGGTTTATAAAAAAACAATAAAAAAAATGTTGTGCGATGAAATTACCTGCACACATGCCAGCAGCGTGGGTTGTAACACAAGCCCCACATGCTTTGCCGCGCATATGGGGAACATGTGGCATCGGCCAAGAGTGTTGGGCAGGTGCGCGGGCTATATTACGTTCAAATTTCATCAACCCGTTCGCGCGTCACGTGCGGTTTTGGTTGCGAATTACTGCGGAACGCAGGAACTAATTTCGATCTCATATGAAATGCACCGGAAGAGTGATGTGTGCGCTCTACTGCTATGCCGTATAATCCCTTTTTTGGGGCGCACACACGAGCGAG                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM631259             [                                                                                                                                                                                                                                                                                              ccgCACAAGCCCCACATGCTTTGCCGCGCATATGGGGAACATGTGGCATCGG CAAGAGTGTTGGGCAGGTGCGCGGGCTATATTACGTTCAAATTTCATCAACCCGTTCGCGCGTCACGTGCGGTTTTGGTTGCGAATTACTGCGGAACGCAGGAACTAATTTCGATCTCATATGAAATGCACCGGAAGAGTGATGTGTGCGCTCTACTGCTATGCCGTATAATCCCTTTTTTGGGGCGCACACACGAGCGAGGTAGGAAGAAAAACAAGCCCCAACAAATTCAGTTGCCAAAATTTCAAAGCATACGCGGGCAGATGATAAAGCCGGACACATGCGATGGATTTGTGTGTGTGTGTGTGTGAGAGAGCGTCGTTTTTATCACCCTTTTTGAGCGCGCGAACGTGTGCTCCCGCCCCTATTCGCTCTGGACAGTTGAAGAAGGAAAGGTGGAAGGTATCACATCCGGCTCGGGCACACCGCGTCCGAGTTCCCTCCGGTTTTTGGTGGCGGTTCGTCACTGCCGAGTAATTAGCATTTAAACAAAATCATCAT]




>consensus_3877#0
CCAGAATCGCCAGGATGTNAAAGCTTCAATCAAATCAGTATTGTTGATTACACATCGAGC
TAACCGCGAAGCTCGCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTT
CCTGTTTTCCCATCAGAACCCGGAACCAAAAGTGTCCATTATTTACATCACAATCAAATG
CGCTCCCCCACCTACCTACTTTACACTGAAGGAGGGTTTATAAAAAAACAATAAAAAAAA
TGTTGTGCGATGAAATTACCTGCACACATGCCAGCAGCGTGGGTTGTAACACAAGCCCCA
CATGCTTTGCCGCGCATATGGGGAACATGTGGCATCGGCCAAGAGTGTTGGGCAGGTGCG
CGGGCTATATTACGTTCAAATTTCATCAACCCGTTCGCGCGTCACGTGCGGTTTTGGTTG
CGAATTACTGCGGAACGCAGGAACTAATTTCGATCTCATATGAAATGCACCGGAAGAGTG
ATGTGTGCGCTCTACTGCTATGCCGTATAATCCCTTTTTTGGGGCGCACACACGAGCGAG
GTAGGAAGAAAAACAAGCCCCAACAAATTCAGTTGCCAAAATTTCAAAGCATACGCGGGC
AGATGATAAAGCCGGACACATGCGATGGATTTGTGTGTGTGTGTGTGTGAGAGAGCGTCG
TTTTTATCACCCTTTTTGAGCGCGCGAACGTGTGCTCCCGCCCCTATTCGCTCTGGACAG
TTGAAGAAGGAAAGGTGGAAGGTATCACATCCGGCTCGGGCACACCGCGTCCGAGTTCCC
TCCGGTTTTTGGTGGCGGTTCGTCACTGCCGAGTAATTAGCATTTAAACAAAATCATCAT

consensusID : consensus_3877#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [NAGTAATAGCACAGCACTTAACTATCACTTAGCTTGTAAATTCCAGTGCATCAACTTTGCTTGCGGCAATGTACATTGCAAACCGAGCGCTCTATATATAAATGCATTTTATAGTACTGTGCAAGTGGCAAAAGCTTCAAATCAAAATCAGTATTGTTGATTACACATCGAGCTAACCGCGAAGCTCGCCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTGTTCCCATCAGAACCCGGAACCAAAAGTGTCCATAATTTACATCACAATCAAATGCGCTCCCCCACCTACCTACTTCACACTGAAGCAGGGCTTTATATAAAAACCACTAAAACAAATGTTGTCGCGATGCAACATTACCTGCACACATGCCAGCACACGTGGGTTGTAACACAAGCCCCACATGCTTTGCCGCGCATATATGGGAACATGTGGCATCGGGCAAGAGTGTTCGGGCAGGTGCGC]

[+] EMBL AL695372             [NAGTAATAGCACAGCACTTAACTATCACTTAGCTTGTAAATTCCAGTGCATCAACTTTGCTTGCGGCAATGTACATTGCAAACCGAGCGCTCTATATATAAATGCATTTTATAGTACTGTGCAAGTGGCAAAAGCTTCAAATCAAAATCAGTATTGTTGATTACACATCGAGCTAACCGCGAAGCTCGCCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTGTTCCCATCAGAACCCGGAACCAAAAGTGTCCATAATTTACATCACAATCAAATGCGCTCCCCCACCTACCTACTTCACACTGAAGCAGGGCTTTATATAAAAACCACTAAAACAAATGTTGTCGCGATGCAACATTACCTGCACACATGCCAGCACACGTGGGTTGTAACACAAGCCCCACATGCTTTGCCGCGCATATATGGGAACATGTGGCATCGGGCAAGAGTGTTCGGGCAGGTGCGC]




>consensus_3877#1
NAGTAATAGCACAGCACTTAACTATCACTTAGCTTGTAAATTCCAGTGCATCAACTTTGC
TTGCGGCAATGTACATTGCAAACCGAGCGCTCTATATATAAATGCATTTTATAGTACTGT
GCAAGTGGCAAAAGCTTCAAATCAAAATCAGTATTGTTGATTACACATCGAGCTAACCGC
GAAGCTCGCCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTG
TTCCCATCAGAACCCGGAACCAAAAGTGTCCATAATTTACATCACAATCAAATGCGCTCC
CCCACCTACCTACTTCACACTGAAGCAGGGCTTTATATAAAAACCACTAAAACAAATGTT
GTCGCGATGCAACATTACCTGCACACATGCCAGCACACGTGGGTTGTAACACAAGCCCCA
CATGCTTTGCCGCGCATATATGGGAACATGTGGCATCGGGCAAGAGTGTTCGGGCAGGTG
CGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3877#0      ------------------------------------------------------------
consensus_3877#1      NAGTAATAGCACAGCACTTAACTATCACTTAGCTTGTAAATTCCAGTGCATCAACTTTGC 60
                                                                                  

consensus_3877#0      --------------------------------------------------CCAGAATCGC 10
consensus_3877#1      TTGCGGCAATGTACATTGCAAACCGAGCGCTCTATATATAAATGCATTTTATAGTACTGT 120
                                                                          ** *  * 

consensus_3877#0      -CAGGATGTNAAAGCTTCAATC--AAATCAGTATTGTTGATTACACATCGAGCTAACCGC 67
consensus_3877#1      GCAAGTGGCAAAAGCTTCAAATCAAAATCAGTATTGTTGATTACACATCGAGCTAACCGC 180
                       ** *  *  **********    ************************************

consensus_3877#0      GAAGCTCGCC-TCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTT 126
consensus_3877#1      GAAGCTCGCCCTCCGCGCTACGTTGCAAGCAGCGCGCGGTTTAGCGATAATCTTCCTGTG 240
                      ********** ************************************************ 

consensus_3877#0      TTCCCATCAGAACCCGGAACCAAAAGTGTCCATTATTTACATCACAATCAAATGCGCTCC 186
consensus_3877#1      TTCCCATCAGAACCCGGAACCAAAAGTGTCCATAATTTACATCACAATCAAATGCGCTCC 300
                      ********************************* **************************

consensus_3877#0      CCCACCTACCTACTTTACACTGAAGGAGGG-TTTATAAAAAAACAA-TAAAAAAAATGTT 244
consensus_3877#1      CCCACCTACCTACTTCACACTGAAGCAGGGCTTTATATAAAAACCACTAAAACAAATGTT 360
                      *************** ********* **** ****** ****** * ***** *******

consensus_3877#0      GT-GCGATGAAA--TTACCTGCACACATGCCAGCA-GCGTGGGTTGTAACACAAGCCCCA 300
consensus_3877#1      GTCGCGATGCAACATTACCTGCACACATGCCAGCACACGTGGGTTGTAACACAAGCCCCA 420
                      ** ****** **  *********************  ***********************

consensus_3877#0      CATGCTTTGCCGCGCATATG-GGGAACATGTGGCATCGGCCAAGAGTGTT-GGGCAGGTG 358
consensus_3877#1      CATGCTTTGCCGCGCATATATGGGAACATGTGGCATCGGGCAAGAGTGTTCGGGCAGGTG 480
                      *******************  ****************** ********** *********

consensus_3877#0      CGCGGGCTATATTACGTTCAAATTTCATCAACCCGTTCGCGCGTCACGTGCGGTTTTGGT 418
consensus_3877#1      CGC--------------------------------------------------------- 483
                      ***                                                         

consensus_3877#0      TGCGAATTACTGCGGAACGCAGGAACTAATTTCGATCTCATATGAAATGCACCGGAAGAG 478
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      TGATGTGTGCGCTCTACTGCTATGCCGTATAATCCCTTTTTTGGGGCGCACACACGAGCG 538
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      AGGTAGGAAGAAAAACAAGCCCCAACAAATTCAGTTGCCAAAATTTCAAAGCATACGCGG 598
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      GCAGATGATAAAGCCGGACACATGCGATGGATTTGTGTGTGTGTGTGTGTGAGAGAGCGT 658
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      CGTTTTTATCACCCTTTTTGAGCGCGCGAACGTGTGCTCCCGCCCCTATTCGCTCTGGAC 718
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      AGTTGAAGAAGGAAAGGTGGAAGGTATCACATCCGGCTCGGGCACACCGCGTCCGAGTTC 778
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      CCTCCGGTTTTTGGTGGCGGTTCGTCACTGCCGAGTAATTAGCATTTAAACAAAATCATC 838
consensus_3877#1      ------------------------------------------------------------
                                                                                  

consensus_3877#0      AT 840
consensus_3877#1      --