These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [TTGTAAGTTTGGACTTTAATGGTATGTGTTTTAACAATAATAATCTATGAATTATGTTTTTCCCCGTTCCGAACGATAGCAATGAGCGGTAATGTAGGCTTGGCCATCACGCAAGTGTTCAATCTAATCTTCATGTGCCAGTGGGGCATGCGACAAACGGCCGAGTTGGAAAATCAAATGACATCCGTCGAGCGTGTCGTAGAGTACGCCGAGGTCGACCCAGAGCCATCACTGGTGTCAATCGGTAAACACAAACCACCAGCCGACTGGCCGACCAAGGGTGCCATACGATTCGAGCATTTTTCGTTACGTTACTCGGCCCAATCAAATTCGGTTCTGCGAGACCTCAATATGTCAATAAACGCGGGCGAAAAGATAGGCATCGTCGGAAGGACGGGCGCAGGGAAATCGTCCATCATCCAGGCCCTGTTTCGATTGGCGGATTTCAATTATTCCACAAGATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTGGACCCCTTCAAGCAGCACGGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAACTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTGGCGCGAGCTATTCTTCGCAACAATCCCCATCCTGATTCTGGATGAAGCCACTGCCAACGT] [+] EMBL BX608417 [TTGTAAGTTTGGACTTTAATGGTATGTGTTTTAACAATAATAATCTATGAATTATGTTTTTCCCCGTTCCGAACGATAGCAATGAGCGGTAATGTAGGCTTGGCCATCACGCAAGTGTTCAATCTAATCTTCATGTGCCAGTGGGGCATGCGACAAACGGCCGAGTTGGAAAATCAAATGACATCCGTCGAGCGTGTCGTAGAGTACGCCGAGGTCGACCCAGAGCCATCACTGGTGTCAATCGGTAAACACAAACCACCAGCCGACTGGCCGACCAAGGGTGCCATACGATTCGAGCATTTTTCGTTACGTTACTCGGCCCAATCAAATTCGGTTCTGCGAGACCTCAATATGTCAATAAACGCGGGCGAAAAGATAGGCATCGTCGGAAGGACGGGCGCAGGGAAATCGTCCATCATCCAGGCCCTGTTTCGATTGGCGGATTTCAATTATTCCACAAGATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTGGACCCCTTCAAGCAGCACGGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAACTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTGGCGCGAGCTATTCTTCGCAACAATCCCCATCCTGATTCTGGATGAAGCCACTGCCAACGT] consensusID : consensus_3879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [TCCCGAGGTTNATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAAGCAGCACAGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAATCCCATCCTGATTCTGGATGAAGCCACGTGCAACGTCGATCCTGAAACTGATAATCTCATTCAAAAAACCATTCGAGAGCAATTTGAACGATGTACTGTTTCTAACAATAGCGCATCGCTTACACACTGTCATGGATAGTGATCGGGTGTTGGTAATGGACGCAGGTAAAGCCATCGAGTTGGCGCATCCTTACGAACTGCTGCAACGAACGGACGGTGCTCTGAAGCGGTTAGTCTGACGGAATGGCAGGAATCTACAGCGCAACAGTCACTGGTATAGCTTATCAACGCTTACGGAACACGATTGACGCAACCGAGCAGCCACTCCAAATGGTTCCAACGGTGCGAAAATGGGTATTCGATGCCAAGCGCAANAATACAANAGGATGGCCGCATACATGTTCCATGCATGGTGCGATGAAGGGATCAACTGGGGTCCCTCCTCACCATG] [+] EMBL AL695408 [TCCCGAGGTTNATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAAGCAGCACAGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAATCCCATCCTGATTCTGGATGAAGCCACGTGCAACGTCGATCCTGAAACTGATAATCTCATTCAAAAAACCATTCGAGAGCAATTTGAACGATGTACTGTTTCTAACAATAGCGCATCGCTTACACACTGTCATGGATAGTGATCGGGTGTTGGTAATGGACGCAGGTAAAGCCATCGAGTTGGCGCATCCTTACGAACTGCTGCAACGAACGGACGGTGCTCTGAAGCGGTTAGTCTGACGGAATGGCAGGAATCTACAGCGCAACAGTCACTGGTATAGCTTATCAACGCTTACGGAACACGATTGACGCAACCGAGCAGCCACTCCAAATGGTTCCAACGGTGCGAAAATGGGTATTCGATGCCAAGCGCAANAATACAANAGGATGGCCGCATACATGTTCCATGCATGGTGCGATGAAGGGATCAACTGGGGTCCCTCCTCACCATG] consensusID : consensus_3879#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [GAGGCCAAGAATCGGCACGAGGAAGATAGGCATCGTCGGAAGGACGGGCGCAGGAAATCGTCCATCATCCAGGCCCTGTTTCGATTGGCGGTTAACGAAGGAATAATACGCATCGACGGCGTGGACATTGGCACACTCGGATTGCACGATCTGCGCAAGCGGATTTCAATTATTCCACAAGATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAAGCAGCACAGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAAGTCCCATCCTGATTCTGGATGAAGCCACTGGCAACGTCGGATCCTGAAACTGATAATCTACATTCACANACAACCATTCGAGAGCAATTTGAACGATGTACTGTATTTAACAATAGCGCATC] [+] EMBL BX468348 [GAGGCCAAGAATCGGCACGAGGAAGATAGGCATCGTCGGAAGGACGGGCGCAGGAAATCGTCCATCATCCAGGCCCTGTTTCGATTGGCGGTTAACGAAGGAATAATACGCATCGACGGCGTGGACATTGGCACACTCGGATTGCACGATCTGCGCAAGCGGATTTCAATTATTCCACAAGATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGACCCCTTCAAGCAGCACAGCGATGAGGCACTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAATTGGACGGTAAAATGGCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCTATTCTTCGAAACAAGTCCCATCCTGATTCTGGATGAAGCCACTGGCAACGTCGGATCCTGAAACTGATAATCTACATTCACANACAACCATTCGAGAGCAATTTGAACGATGTACTGTATTTAACAATAGCGCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3879#0 TTGTAAGTTTGGACTTTAATGGTATGTGTTTTAACAATAATAATCTATGAATTATGTTTT 60 consensus_3879#2 ------------------------------------------------------------ consensus_3879#1 ------TCCCGAGGTTNATCCGATTCTGTTTTCCGGAACGTTGCGGGCGAATTTAGA--- 51 consensus_3879#0 TCCCCGTTCCGAACGATAGCAATGAGCGGTAATGTAGGCTTGGCCATCACGCAAGTGTTC 120 consensus_3879#2 ------------------------------------------------------------ consensus_3879#1 -CCCCTTCAAGCAGCACAGCGATGA--GGCACTTTGGAATGCGCTACAATAC----GTGG 104 consensus_3879#0 AATCTAATCTTCATGTGCCAGTGGGGCATGCGACAAACGGCCGAGTTGGAAAATCAAATG 180 consensus_3879#2 ------------------------------------------------------------ consensus_3879#1 AACTGAAGGAGGTCGTTTCAGCG----ATGGAAGGAA------AATTGGACGGTAAAATG 154 consensus_3879#0 ACATCCG-TCGAGCGTGTCGTAGAGTACGCCGAGGTCGACCCAGAGCCATCACTGGTGTC 239 consensus_3879#2 ------------------------------------------------------------ consensus_3879#1 GCGGACGGTGGTACCAACTTTAGCATGGGACAACGGCAACTCGTGTGTTTAGCGCGAGCT 214 consensus_3879#0 AATCGGTAAACACAAACCACCAGCCGACTGGCCGACCAAGGGTGCCATA-CGATTCGAGC 298 consensus_3879#2 -------------------------------GAGGCCAAGAAT-CGGCA-CGAGGAAGAT 27 consensus_3879#1 ATTCTTCGAAACAATCCCATCCTGATTCTGGATGAAGCCACGTGCAACGTCGATCCTGAA 274 * * * *** consensus_3879#0 ATTTTTCGTTACGTTACTCGGCCCAATCAAATTCGGTTC-TGCGAGAC-CTCAATATGTC 356 consensus_3879#2 AGGCATCGTCGGAAGGACGGGCGCAGGAAATCGTCCATC-ATCCAGGC-CC---TGTTTC 82 consensus_3879#1 ACTGATAATCTCATTCAAAAAACCATTCGAGAGCAATTTGAACGATGTACTGTTTCTAAC 334 * * * ** * * * * * * * * consensus_3879#0 AATAAACG-CGGGCGAAAAGATAGGCATCGTCGGAAGGACGGGCGCAGGGAAATCGTCCA 415 consensus_3879#2 GATTGGCGGTTAACGAAGGAATAATACGCATCGACGGCGTGGACATTGGCA---CACTCG 139 consensus_3879#1 AAT-AGCGCATCGCTTACACACTGTCATGGATAGT-GATCGGGTGTTGGTAA--TGGACG 390 ** ** * * * * ** ** * * consensus_3879#0 TCATCCAGGCCCTGTTTCGATTGGCGGATTTCAATTA--TTCCACAA-GATCCGATTCTG 472 consensus_3879#2 GATTGCACGATCTGC----GCAAGCGGATTTCAATTA--TTCCACAA-GATCCGATTCTG 192 consensus_3879#1 CAGGTAAAGCCATCG---AGTTGGCGCATCCTTACGAACTGCTGCAACGAACGGACGGTG 447 * * * *** ** * * * * *** ** * ** ** consensus_3879#0 TTTTCCGGAACGTTG-CGGGCGAATTTGGACCCCTTCA-AGCAGCACGGCGA-TGAGGCA 529 consensus_3879#2 TTTTCCGGAACGTTG-CGGGCGAATTTAGACCCCTTCA-AGCAGCACAGCGA-TGAGGCA 249 consensus_3879#1 CTCTGAAGCGGTTAGTCTGACGGAATGGCAGGAATCTACAGCGCAACAGTCACTGGTATA 507 * * * * * * * ** * * * * * *** ** * * ** * consensus_3879#0 CTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAA 589 consensus_3879#2 CTTTGGAATGCGCTACAATACGTGGAACTGAAGGAGGTCGTTTCAGCGATGGAAGGAAAA 309 consensus_3879#1 GCTTATCAACGCTTACGGAACACG--ATTGACGCAA--CCGAGCAGCCACTCCAAATGGT 563 ** * *** ** * * *** * * * **** * * consensus_3879#0 CTGGACGGTAAAATGGCGGACGGT-GGTACCAA---CTTTAGCATGGGACAACGGCAACT 645 consensus_3879#2 TTGGACGGTAAAATGGCGGACGGT-GGTACCAA---CTTTAGCATGGGACAACGGCAACT 365 consensus_3879#1 TCCAACGGTGCGAAAATGGGTATTCGATGCCAAGCGCAANAATACAANAGGATGGCCGCA 623 ***** * ** * * * **** * * * * * *** * consensus_3879#0 CGTGTGTTTGGCGCGAGCTATTCTTC--GCAACAATCCCCATCCTGATTCTGGATGAAGC 703 consensus_3879#2 CGTGTGTTTAGCGCGAGCTATTCTTC--GAAACAAGTCCCATCCTGATTCTGGATGAAGC 423 consensus_3879#1 TACATGTTCCATGCATGGTGCGATGAAGGGATCAACTGGGGTCCCTCCTCACCATG---- 679 **** ** * * * * * *** *** ** *** consensus_3879#0 CACTGCCAACGT------------------------------------------------ 715 consensus_3879#2 CACTGGCAACGTCGGATCCTGAAACTGATAATCTACATTCACANACAACCATTCGAGAGC 483 consensus_3879#1 ------------------------------------------------------------ consensus_3879#0 ------------------------------------- consensus_3879#2 AATTTGAACGATGTACTGTATTTAACAATAGCGCATC 520 consensus_3879#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||