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Anopheles gambiae
cluster # 3882 cluster # 3882       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3882#0 length = 1076 sequences # 2  
consensus_3882#1 length = 694 sequences # 1  

consensusID : consensus_3882#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1076
fasta sequence
                              [CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACATCTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGAGGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGTTTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGC--AAAAAAAACTCATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGCATGCTAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCGATCCCGCGTTTCTAAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCGGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAAACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGCATTGCTTTCCTGTCAAAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACGCAACGCTAGTGAGACCTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTACGTTAAAAACAC]

[+] EMBL BM601567             [CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACATCTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGAGGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGTTTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGC  AAAAAAAACTCATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX615736             [                                                                                                                                                                                                                                                                                                                                                              TCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAAAGCAGGACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAAACTCATTCTGATGTGAGTG TTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGCATGCTAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCGATCCCGCGTTTCTAAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCGGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAAACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGCATTGCTTTCCTGTCAAAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACGCAACGCTAGTGAGACCTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTACGTTAAAAACAC]


>consensus_3882#0 CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACAT CTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGA GGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGT TTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAA GGGTATGGGAGGGACATAGAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGT GGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGAC GTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACCT AACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAACT CATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGT TTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCAC GCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAAT GAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGCATGC TAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCGATCCCGCGTTTCT AAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCG ACTCGGCCGGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA ACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGCATTGCTTTCCTGTCA AAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACGCAACGCTAGTGAGAC CTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTACGTTAAAAACAC



consensusID : consensus_3882#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence
                              [AGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAATGCAGNACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAAAACTCATTCTGATGTGAGTGTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTTGGAAGATCTTTTTTGTGGCATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACGATACCAAGCGGGAGAGAACGATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA]

[+] EMBL BX621192             [AGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAATGCAGNACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAAAACTCATTCTGATGTGAGTGTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTTGGAAGATCTTTTTTGTGGCATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACGATACCAAGCGGGAGAGAACGATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA]


>consensus_3882#1 AGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCAC TACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCA AAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGG TTTTGGGAGAATGCAGNACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGA ATAGCAAAAGCAAAAAAAAAAACTCATTCTGATGTGAGTGTTTGGGTCAGGTTTGCATGG CGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCT GTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGC AATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTT GGAAGATCTTTTTTGTGGCATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACG ATACCAAGCGGGAGAGAACGATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTT TTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAA GTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3882#0      CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACAT 60
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      CTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGA 120
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      GGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGT 180
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      TTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAA 240
consensus_3882#1      ----------------------------------------AGACACGAGTGCTAAGACAA 20
                                                              ********************

consensus_3882#0      GGGTATGGGAGGGACATAGAAAAAAAAA-CACTTTGCCACTACGATTACACACCCGACCG 299
consensus_3882#1      GGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCG 80
                      **************************** *******************************

consensus_3882#0      TGGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGA 359
consensus_3882#1      TGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGA 140
                      ********************** *************************************

consensus_3882#0      CGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACC 419
consensus_3882#1      CGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAATGCAGNACC 200
                      *************************************************** **** ***

consensus_3882#0      TAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAA- 478
consensus_3882#1      TAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAA 260
                      *********************************************************** 

consensus_3882#0      --CTCATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAG 536
consensus_3882#1      AACTCATTCTGATGTGAGTGTTT-GGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAG 319
                        ********************* ************************************

consensus_3882#0      GTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGT 596
consensus_3882#1      GTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGT 379
                      ************************************************************

consensus_3882#0      TCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAG 656
consensus_3882#1      TCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAG 439
                      ************************************************************

consensus_3882#0      GAATGAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGC 716
consensus_3882#1      GAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTTGGAAGATCTTTTTTGTGGC 499
                      ******************************* ****************************

consensus_3882#0      ATGCTAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCG--------- 767
consensus_3882#1      ATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACGATACCAAGCGGGAGAGAAC 559
                      *** ************* *** *****************************         

consensus_3882#0      -ATCCCGCGTTTCTAAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAA 826
consensus_3882#1      GATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTTTTTTGTTGTTCTGGGCAAA 619
                       ****************************** ****************************

consensus_3882#0      CGCTGATATGACCGACTCGGCC-GGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAG 885
consensus_3882#1      CGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAAGTAAGCTGTGTGTTAAGAG 679
                      ********************** ************* ***********************

consensus_3882#0      ACCGGGTGTACTGAAACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGC 945
consensus_3882#1      ACCGGGTGTACTGAA--------------------------------------------- 694
                      ***************                                             

consensus_3882#0      ATTGCTTTCCTGTCAAAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACG 1005
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      CAACGCTAGTGAGACCTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTAC 1065
consensus_3882#1      ------------------------------------------------------------
                                                                                  

consensus_3882#0      GTTAAAAACAC 1076
consensus_3882#1      -----------
                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)