These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1076 fasta sequence [CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACATCTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGAGGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGTTTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGC--AAAAAAAACTCATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGCATGCTAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCGATCCCGCGTTTCTAAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCGGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAAACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGCATTGCTTTCCTGTCAAAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACGCAACGCTAGTGAGACCTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTACGTTAAAAACAC] [+] EMBL BM601567 [CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACATCTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGAGGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGTTTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGC AAAAAAAACTCATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGG ] [+] EMBL BX615736 [ TCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAAAGCAGGACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAAACTCATTCTGATGTGAGTG TTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGCATGCTAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCGATCCCGCGTTTCTAAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCGGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAAACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGCATTGCTTTCCTGTCAAAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACGCAACGCTAGTGAGACCTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTACGTTAAAAACAC] consensusID : consensus_3882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [AGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAATGCAGNACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAAAACTCATTCTGATGTGAGTGTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTTGGAAGATCTTTTTTGTGGCATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACGATACCAAGCGGGAGAGAACGATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA] [+] EMBL BX621192 [AGACACGAGTGCTAAGACAAGGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCGTGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGACGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAATGCAGNACCTAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAAAACTCATTCTGATGTGAGTGTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAGGTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGTTCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAGGAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTTGGAAGATCTTTTTTGTGGCATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACGATACCAAGCGGGAGAGAACGATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTTTTTTGTTGTTCTGGGCAAACGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAAGTAAGCTGTGTGTTAAGAGACCGGGTGTACTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3882#0 CCGCTTCATCAGCAATGGGCATGCGCCGACCAGCGGCGGTGCGGCTGGCGGCGATCACAT 60 consensus_3882#1 ------------------------------------------------------------ consensus_3882#0 CTGCTGGCGAAAGTTTTCCATCAACTCGGAGGAATACTCGACGGAGCTGTAAGCAGGGGA 120 consensus_3882#1 ------------------------------------------------------------ consensus_3882#0 GGATGGCGCCTGTTAATAGAATATTGTTACACTTTTCGTTTTCGTTCCATATCTTTCTGT 180 consensus_3882#1 ------------------------------------------------------------ consensus_3882#0 TTGCATGCGTTTGCAACGTTGCAGTTTTGTACATACTGTTAGACACGAGTGCTAAGACAA 240 consensus_3882#1 ----------------------------------------AGACACGAGTGCTAAGACAA 20 ******************** consensus_3882#0 GGGTATGGGAGGGACATAGAAAAAAAAA-CACTTTGCCACTACGATTACACACCCGACCG 299 consensus_3882#1 GGGTATGGGAGGGACATAGAAAAAAAAAACACTTTGCCACTACGATTACACACCCGACCG 80 **************************** ******************************* consensus_3882#0 TGGTGTGTATGTGTGTTCCGAACTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGA 359 consensus_3882#1 TGGTGTGTATGTGTGTTCCGAATTGGTTTGGCCGGTGGCAAAGGACTGATTTCATGGGGA 140 ********************** ************************************* consensus_3882#0 CGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAACGCAGGACC 419 consensus_3882#1 CGTGTGTGTGTTTATGTTTGTTCATTCGAAGAGGGTAGGGTTTTGGGAGAATGCAGNACC 200 *************************************************** **** *** consensus_3882#0 TAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAA- 478 consensus_3882#1 TAACCGGTGTCCTGTTCATCGGTTTATATTATTTATTCGAATAGCAAAAGCAAAAAAAAA 260 *********************************************************** consensus_3882#0 --CTCATTCTGATGTGAGTGTTTTGGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAG 536 consensus_3882#1 AACTCATTCTGATGTGAGTGTTT-GGGTCAGGTTTGCATGGCGCGTCTTTCAAAAGGAAG 319 ********************* ************************************ consensus_3882#0 GTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGT 596 consensus_3882#1 GTGTTTAAAATAAAAGCTGCAACTTGTGAACCTTTAAACCTGTCGCATGTGTTACTGCGT 379 ************************************************************ consensus_3882#0 TCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAG 656 consensus_3882#1 TCACGCAACATCATTGTTCGTTATCGTTACCAATCCGTAGCAATGCACTTACGGGAAAAG 439 ************************************************************ consensus_3882#0 GAATGAAGTGTGCTCATGAGCGATCTTAATTGGACGATCTTGGAAGATCTTTTTTGTGGC 716 consensus_3882#1 GAATGAAGTGTGCTCATGAGCGATCTTAATTCGACGATCTTGGAAGATCTTTTTTGTGGC 499 ******************************* **************************** consensus_3882#0 ATGCTAGCGCGGCATACACTGTTTCGTGCAGAGGCGCAACGATACCAAGCG--------- 767 consensus_3882#1 ATGTTAGCGCGGCATACGCTGNTTCGTGCAGAGGCGCAACGATACCAAGCGGGAGAGAAC 559 *** ************* *** ***************************** consensus_3882#0 -ATCCCGCGTTTCTAAAAGATGGTAGAGTAGTTAAGTAGTTTTTTGTTGTTCTGGGCAAA 826 consensus_3882#1 GATCCCGCGTTTCTAAAAGATGGTAGAGTAGNTAAGTAGTTTTTTGTTGTTCTGGGCAAA 619 ****************************** **************************** consensus_3882#0 CGCTGATATGACCGACTCGGCC-GGGATAAAGTAATATTAAGTAAGCTGTGTGTTAAGAG 885 consensus_3882#1 CGCTGATATGACCGACTCGGCCCGGGATAAAGTAATNTTAAGTAAGCTGTGTGTTAAGAG 679 ********************** ************* *********************** consensus_3882#0 ACCGGGTGTACTGAAACTTAATGTAGCCTACTAGAGCGTGGATATGGCTGGAAGACGAGC 945 consensus_3882#1 ACCGGGTGTACTGAA--------------------------------------------- 694 *************** consensus_3882#0 ATTGCTTTCCTGTCAAAAATGGCACACGTGAGCTGTTTCAAGGGAGAATTGTACATAACG 1005 consensus_3882#1 ------------------------------------------------------------ consensus_3882#0 CAACGCTAGTGAGACCTGCGCTGGAAGTTGGAAGTTGGTAATAATAAAAATTACGGTTAC 1065 consensus_3882#1 ------------------------------------------------------------ consensus_3882#0 GTTAAAAACAC 1076 consensus_3882#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||