These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGGAGCGCAGTGGCAGAAGCAGCAGGCGATGCAATAGCAACAATAGCAACAAAACAGGCAAGCCCACAAAATCCATCCATCCATCCAAGTAGACAAAGCGGCGAGATAGCTTAAGTAGAGCATCAACCCGTGCGGGAAGCGCGAAATCCTCTTGATAAGAGAGCACCCGGCGGAAGCCGAGAAGAAGTCCGTTAGATAACCTGCGCTTGCAACGGCGGTAATTTTGCTGTACGGCCCCGTTGCCAGATGCAGATTTTATATAACCTTCACTGCTGCACATAGTGCAAGTGCAGTGCAGTGTGTGATTGCTGCAGTTGGTGGTGGTACACTTGCTTCTCCATGCTGTTGGGCTAGGTCGTTCGTGCTCGTGTGCACAATCAAAGATGGACAACGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGATTGCTGCAGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAACTGTTTCATGGATACGAAGTAACCGGGCTGG] [+] EMBL BM606808 [CCGGAGCGCAGTGGCAGAAGCAGCAGGCGATGCAATAGCAACAATAGCAACAAAACAGGCAAGCCCACAAAATCCATCCATCCATCCAAGTAGACAAAGCGGCGAGATAGCTTAAGTAGAGCATCAACCCGTGCGGGAAGCGCGAAATCCTCTTGATAAGAGAGCACCCGGCGGAAGCCGAGAAGAAGTCCGTTAGATAACCTGCGCTTGCAACGGCGGTAATTTTGCTGTACGGCCCCGTTGCCAGATGCAGATTTTATATAACCTTCACTGCTGCACATAGTGCAAGTGCAGTGCAGTGTGTGATTGCTGCAGTTGGTGGTGGTACACTTGCTTCTCCATGCTGTTGGGCTAGGTCGTTCGTGCTCGTGTGCACAATCAAAGATGGACAACGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGATTGCTGCAGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAACTGTTTCATGGATACGAAGTAACCGGGCTGG] consensusID : consensus_3884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGCGGACGCGTGGGCGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGATTGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAACTGTTTCATGGATACGAAGTAACCGGGCTGGAGCACCTGCCGGAAACGGGTGGCGGCGCACTGCTGATCTATTACCACGGTGCGCTGCCCATCGACATGTACTACCTGACGGCGGAAACGATGCTGAAGTGCAACCGGCTGATTCACACCGTTGGCGATCGGTTTCTGGACCGCATTCCCGGCTGGCGGCTCGTTTCGCGCGTGATGAACGTTACCTCCGGCTCGGTGCAATCATGCGTGGCAACGTTGCGTGCCGGTGAGCTGCTGTCGATTGCACCGGGCGGCGTGTACGAGGCCCAGTTCGGCGACAGTGTGTACGAGGTGCTGTGGAAGAATCGAACAGGATTCGCCCGAGTGGCGCTGGAAGCCAAAGTGCCCATCATACCCATGTT] [+] EMBL BM601520 [CCGCGGACGCGTGGGCGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGATTGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAGTAAACTGTTTCATGGATACGAAGTAACCGGGCTGGAGCACCTGCCGGAAACGGGTGGCGGCGCACTGCTGATCTATTACCACGGTGCGCTGCCCATCGACATGTACTACCTGACGGCGGAAACGATGCTGAAGTGCAACCGGCTGATTCACACCGTTGGCGATCGGTTTCTGGACCGCATTCCCGGCTGGCGGCTCGTTTCGCGCGTGATGAACGTTACCTCCGGCTCGGTGCAATCATGCGTGGCAACGTTGCGTGCCGGTGAGCTGCTGTCGATTGCACCGGGCGGCGTGTACGAGGCCCAGTTCGGCGACAGTGTGTACGAGGTGCTGTGGAAGAATCGAACAGGATTCGCCCGAGTGGCGCTGGAAGCCAAAGTGCCCATCATACCCATGTT] consensusID : consensus_3884#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence [AATGAAGAAGAGTCCTGGAAAGCGGCTCGAGGGCTAAGGGCTTACGTGTGGAAACTCCACAGGAAACGGCTTCAGGGATACGAAGTAACCGGGCTGGAGCACCCGCCGGAAACGGGAGGCGGCGCACTGCTGAACTAATACCACGGGGCGCGGCCCAGCGACATGAACTACCTGACGGCGGAAACGAAGCCGAAGGGCAACCGGCCGAATCACACCGGG] [+] EMBL BX613767 [AATGAAGAAGAGTCCTGGAAAGCGGCTCGAGGGCTAAGGGCTTACGTGTGGAAACTCCACAGGAAACGGCTTCAGGGATACGAAGTAACCGGGCTGGAGCACCCGCCGGAAACGGGAGGCGGCGCACTGCTGAACTAATACCACGGGGCGCGGCCCAGCGACATGAACTACCTGACGGCGGAAACGAAGCCGAAGGGCAACCGGCCGAATCACACCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3884#1 CCGCGGACGCGTGGGCGAAAGCATCTCGCACGCATCGGGCGGACTTGGTAGCACGTTGAT 60 consensus_3884#2 ------------------------------------------------------------ consensus_3884#0 -CCGGAGCGCAGTGGCAGAAGCAGCAGGCGATGCAATAGCAACAATAGCAACAAAACAGG 59 consensus_3884#1 TGTTCCGAACTGGTTCGGATGGATGCATAATTTATCGCTACCCCTGTTGGTGGTGTTTCT 120 consensus_3884#2 ------------------------------------------------------------ consensus_3884#0 CAAGCCCACAAAATCCATCCATCCATCCAAGTAGACAAAGCGGCGAGATAGCTTAAGTAG 119 consensus_3884#1 GCTGCCCTGGATGTATGTGCTGCTCATTTTGTCCTCCATTCCGTACCTGCATCTGTGCAA 180 consensus_3884#2 ------------------------------------------------------------ consensus_3884#0 AGCATCA-ACCCGTGCGGGAAGCGCGAAATCCTCTTGATAAGAGAGCACCCGGCG-GAAG 177 consensus_3884#1 TTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAACGAAGATG--AGTTCTGGAAAGCGGCT 238 consensus_3884#2 -------------------------------AATGAAGAAG--AGTCCTGGAAAGCGGCT 27 consensus_3884#0 CCGAGAAGAAGTCCGTTAGATAACCTGCGCTTGCAACGGCGGTAATTTTGCTGTACGGCC 237 * * * * * ** **** consensus_3884#1 CGATGGCTAATGGCTTACGT-GTGGAATCTTCACAGT---AAACTGTTTCATGGATACGA 294 consensus_3884#2 CGAGGGCTAAGGGCTTACGT-GTGGAAACTCCACAGG---AAACGGCTTCAGGGATACGA 83 consensus_3884#0 CCGTTGCCAGATGCAGATTTTATATAACCTTCACTGCTGCACATAGTGCAAGTGCAGTGC 297 * ** * ** * * * ** ** *** * * * * * * * consensus_3884#1 AGTAACCGG--GCTGGAGCACCTGCCGGAA-ACGGGTGGCGGCGCACTGCTGATCTATTA 351 consensus_3884#2 AGTAACCGG--GCTGGAGCACCCGCCGGAA-ACGGGAGGCGGCGCACTGCTGAACTAATA 140 consensus_3884#0 AGTGTGTGATTGCTGCAGTTGGTGGTGGTACACTTGCTTCTCCATGCTGTTGGGCTAGGT 357 *** * **** ** * ** * ** * * * *** ** *** consensus_3884#1 CCACGGTGCGCTGCCCATCGACATGTACTACCTGACGGCGGAAACGATGCTGAAGTGCAA 411 consensus_3884#2 CCACGGGGCGCGGCCCAGCGACATGAACTACCTGACGGCGGAAACGAAGCCGAAGGGCAA 200 consensus_3884#0 CGTTCGTGCTCGTGTGCACAATCAAAGATGGACAACGAAAGCATCTCGCACGCATCG-GG 416 * * ** * * * * *** * * * * * * consensus_3884#1 CCGGCTGATTCACACCGTTGGCGATCGGTTTCTGGACCGCATTC--CCGGCTGGCGGCTC 469 consensus_3884#2 CCGGCCGAATCACACCGGG----------------------------------------- 219 consensus_3884#0 CGGACTTGGTAGCACGTTGATTGCTGCAGTTCCGAACTGGTTCGGATGGATGCATAATTT 476 * * * * *** consensus_3884#1 GTTTCGCGCGTGATGAACGTTACCTCCGGCTCGGTGCAATCATGCGTGGCAACGTTGCGT 529 consensus_3884#2 ------------------------------------------------------------ consensus_3884#0 ATCGCTACCCCTGTTGGTGGTGTTTCTGCTGCCCTGGATGTATGTGCTGCTCATTTTGTC 536 consensus_3884#1 GCCGGTGAGCTGCTGTCGATTGCACCGGGCGGCGTGTACGAGGCCCAGTTCGGCGA-CAG 588 consensus_3884#2 ------------------------------------------------------------ consensus_3884#0 CTCCATTCCGTACCTGCATCTGTGCAATTTTCTGCGGTTGCGTTTTTGGAAGCAAAGCAA 596 consensus_3884#1 TGTGTACGAGGTGCTGTGGAAGAATCGAACAGGATTCGCCCGAGTGGCG---CTGGAAGC 645 consensus_3884#2 ------------------------------------------------------------ consensus_3884#0 CGAAGATGAGTTCTGGAAAGCGGCTCGATGGCTAATGGCTTACGTGTGGAATCTTCACAG 656 consensus_3884#1 CAAAGTGCCCATCATACCCATGTT----------- 669 consensus_3884#2 ----------------------------------- consensus_3884#0 TAAACTGTTTCATGGATACGAAGTAACCGGGCTGG 691 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||