These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3888#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1184 fasta sequence [CAGAATTCCCGAGGTTAACTTCCTAATGACAACCGAGCTGCCGGAAAGCTGTGTGTGATATCTGATCGACGTTCGCAAGGGTTCGGGTGAGAGCTGCTGTATAGAAACGGCAAGGGGCATTTCCTGCCCTACTACGTGTTGGTCAGTTAGAAAAGACGTACTCTGCAACAAAAAAAAAACCACTACCCACAATACGGTGCTGAGTTAGTGTACGTACTATTGTACGTATTCCGCGCATTTGCATTCAATATGTGCTGTCTATCATTCCCTGGCTATANCAGAATCGTTGTTGTGTACAGTANTATGTATNGTGTTGTATCCTNGGGTGAGGGAGCTNGTTCCATATTCCGTAACCGCAGGCTTGTATTCGACNTCCTATCTATANNCCCCCCCAACCCCGAAAATTGGGGGAAACAGGTATTACAAAACCAAACTATACCGAGGCGACAAACAACCTTGGGCCAANCGTGGCCATCTCNAACCACTACCAANCACAACACGGTCACTCTATCCGCACCACCCACCNTCCCCTNCNTCCTCCAACTTCACTACCCATAACCCCAAACCATGGCATGCGGACCTACAGNNACGGGCCAGGAANCGTGGCGCANGCNATGCNACACCCCCTAAACNNCAGCNTTACCAACACGAGCCCAACCCTCNNCCCCCCTAACTNGGGANAANCCNCNGAAGGCATNATGGCNANCAAGACACCACGCTANAGCACAACCGCTAGCTCGCACNACACCCAACACGGGGCACTACGCGAAANACACAGCAAACACAACTNAACACCAANACCCNCGACCACACNCACCAAACACAAAACTCCAAAACAGGCCACACTANAACAAGGACCTTTACCCTCCCGCGCCAGTCTCATANCCACGACGCCAGGCANACACAAACAATACCAGGCCCATCCCCCGCACAACACAGCCCCACGANCCCGGGTGNCCCNNACANAGGGCAAACANAGCGGGCATGAACCCNGNCCATATGCACGAACCGCGGCAGGAACCCAAACANTCCACAGACGNNCACACAACGCCCTCAACCACAACACCCCCCACAACACCCACAACGAACACACCCCCCCCCCGCCANACCACCAGCCCCCCCGCCACCCCCCCACACCCCCACCGCCCCAGCACCACCCACCNNCCCCAACAGCGCNGCCGACA] [+] EMBL AL695506 [CAGAATTCCCGAGGTTAACTTCCTAATGACAACCGAGCTGCCGGAAAGCTGTGTGTGATATCTGATCGACGTTCGCAAGGGTTCGGGTGAGAGCTGCTGTATAGAAACGGCAAGGGGCATTTCCTGCCCTACTACGTGTTGGTCAGTTAGAAAAGACGTACTCTGCAACAAAAAAAAAACCACTACCCACAATACGGTGCTGAGTTAGTGTACGTACTATTGTACGTATTCCGCGCATTTGCATTCAATATGTGCTGTCTATCATTCCCTGGCTATANCAGAATCGTTGTTGTGTACAGTANTATGTATNGTGTTGTATCCTNGGGTGAGGGAGCTNGTTCCATATTCCGTAACCGCAGGCTTGTATTCGACNTCCTATCTATANNCCCCCCCAACCCCGAAAATTGGGGGAAACAGGTATTACAAAACCAAACTATACCGAGGCGACAAACAACCTTGGGCCAANCGTGGCCATCTCNAACCACTACCAANCACAACACGGTCACTCTATCCGCACCACCCACCNTCCCCTNCNTCCTCCAACTTCACTACCCATAACCCCAAACCATGGCATGCGGACCTACAGNNACGGGCCAGGAANCGTGGCGCANGCNATGCNACACCCCCTAAACNNCAGCNTTACCAACACGAGCCCAACCCTCNNCCCCCCTAACTNGGGANAANCCNCNGAAGGCATNATGGCNANCAAGACACCACGCTANAGCACAACCGCTAGCTCGCACNACACCCAACACGGGGCACTACGCGAAANACACAGCAAACACAACTNAACACCAANACCCNCGACCACACNCACCAAACACAAAACTCCAAAACAGGCCACACTANAACAAGGACCTTTACCCTCCCGCGCCAGTCTCATANCCACGACGCCAGGCANACACAAACAATACCAGGCCCATCCCCCGCACAACACAGCCCCACGANCCCGGGTGNCCCNNACANAGGGCAAACANAGCGGGCATGAACCCNGNCCATATGCACGAACCGCGGCAGGAACCCAAACANTCCACAGACGNNCACACAACGCCCTCAACCACAACACCCCCCACAACACCCACAACGAACACACCCCCCCCCCGCCANACCACCAGCCCCCCCGCCACCCCCCCACACCCCCACCGCCCCAGCACCACCCACCNNCCCCAACAGCGCNGCCGACA] consensusID : consensus_3888#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 196 fasta sequence [GGCATTTCCTGCCCTACTCGTGTTGGTCAGTTAGAAAAGACGTCTCTGCAACAAAAAAAAAAAACCACTCCCACAATCGGTGCTGAGTTAGTGTCGTCTTTGTACGTTTTCGGATTGATTCAATTTGTGCTGTCTATCATTCCTGCTTTTTTTTTGTGTGTGTCAGTTTTGTATGTGTGTTATCTGGGTGAGGAGC] [+] EMBL BX613968 [GGCATTTCCTGCCCTACTCGTGTTGGTCAGTTAGAAAAGACGTCTCTGCAACAAAAAAAAAAAACCACTCCCACAATCGGTGCTGAGTTAGTGTCGTCTTTGTACGTTTTCGGATTGATTCAATTTGTGCTGTCTATCATTCCTGC ] [+] EMBL BX613967 [ AAAAGACGTCTCTGCAACAAAAAAAAAAAACCACTCCCACAATCGGGGCTGAGTTAGTGTCGTCTTTGTACGTTTTCGGATTGATTCAATTTGTGCTGTCTATCATTCCTGCTTTTTTTTTGTGTGTGTCAGTTTTGTATGTGTGTTATCTGGGTGAGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3888#0 CAGAATTCCCGAGGTTAACTTCCTAATGACAACCGAGCTGCCGGAAAGCTGTGTGTGATA 60 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 TCTGATCGACGTTCGCAAGGGTTCGGGTGAGAGCTGCTGTATAGAAACGGCAAGGGGCAT 120 consensus_3888#1 -------------------------------------------------------GGCAT 5 ***** consensus_3888#0 TTCCTGCCCTACTACGTGTTGGTCAGTTAGAAAAGACGTACTCTGCAACAAAAAAAAAA- 179 consensus_3888#1 TTCCTGCCCTACT-CGTGTTGGTCAGTTAGAAAAGACGT-CTCTGCAACAAAAAAAAAAA 63 ************* ************************* ******************* consensus_3888#0 -CCACTACCCACAATACGGTGCTGAGTTAGTGTACGTACTATTGTACGTATTCCGCGCAT 238 consensus_3888#1 ACCACT-CCCACAAT-CGGTGCTGAGTTAGTGT---CGTCTTTGTACGTTTTC---GGAT 115 ***** ******** ***************** ******** *** * ** consensus_3888#0 TTGCATTCAATATGTGCTGTCTATCATTCCCTGGCTATANCAGAATCGTTGTTGTGTACA 298 consensus_3888#1 TG--ATTCAATTTGTGCTGTCTATCATTCCT--GCT---------TTTTTTTTGTGTGTG 162 * ******* ****************** *** * ** ****** consensus_3888#0 GTANTATGTATNGTGTTGTATCCTNGGGTGAGGGAGCTNGTTCCATATTCCGTAACCGCA 358 consensus_3888#1 TCAGTTTTGTATGTGTGTTATC--TGGGTGAGG-AGC----------------------- 196 * * * **** **** ******** *** consensus_3888#0 GGCTTGTATTCGACNTCCTATCTATANNCCCCCCCAACCCCGAAAATTGGGGGAAACAGG 418 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 TATTACAAAACCAAACTATACCGAGGCGACAAACAACCTTGGGCCAANCGTGGCCATCTC 478 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 NAACCACTACCAANCACAACACGGTCACTCTATCCGCACCACCCACCNTCCCCTNCNTCC 538 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 TCCAACTTCACTACCCATAACCCCAAACCATGGCATGCGGACCTACAGNNACGGGCCAGG 598 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 AANCGTGGCGCANGCNATGCNACACCCCCTAAACNNCAGCNTTACCAACACGAGCCCAAC 658 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CCTCNNCCCCCCTAACTNGGGANAANCCNCNGAAGGCATNATGGCNANCAAGACACCACG 718 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CTANAGCACAACCGCTAGCTCGCACNACACCCAACACGGGGCACTACGCGAAANACACAG 778 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CAAACACAACTNAACACCAANACCCNCGACCACACNCACCAAACACAAAACTCCAAAACA 838 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 GGCCACACTANAACAAGGACCTTTACCCTCCCGCGCCAGTCTCATANCCACGACGCCAGG 898 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CANACACAAACAATACCAGGCCCATCCCCCGCACAACACAGCCCCACGANCCCGGGTGNC 958 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CCNNACANAGGGCAAACANAGCGGGCATGAACCCNGNCCATATGCACGAACCGCGGCAGG 1018 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 AACCCAAACANTCCACAGACGNNCACACAACGCCCTCAACCACAACACCCCCCACAACAC 1078 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CCACAACGAACACACCCCCCCCCCGCCANACCACCAGCCCCCCCGCCACCCCCCCACACC 1138 consensus_3888#1 ------------------------------------------------------------ consensus_3888#0 CCCACCGCCCCAGCACCACCCACCNNCCCCAACAGCGCNGCCGACA 1184 consensus_3888#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||