These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1198 fasta sequence [CCGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAAGCTCGGCATGGCGGTCGGCGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGAGACGGCACTGACCATGATACACACGATACGGGAGGCATTTAACGAGCTGCTGGCGGACATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCAGACGCGATGAACGAACGGATCGGCTATCCGGACATTCTGACCAATGCGGACGAGTTGGAGAAGGAGTACGTGAATCTCACGATACACGGTGGTTTGTTTTTGGAAAACATTCTAAGCATACTGAAGTGGGAGGCTGAGCGGAACCTGCAGCTGCTGCGCAAACCGGTTGACAAAAACAAGTGGGCAACGGAACCGGCCGTTGTAAACGCGTTCTATAATCCCAACAAGAATGATATAGTATTTCCCGCCGGCATTCTGCAGCCGCTGTTCTACAGCCAAAACTTCCCGAAATCGCTCAACTACGGCGGCATCGGGGTGGTGATCGGGCACGAAATAACGCACGGGTTCGACGACAAGGGCCGCCAGTTCGATAAGGACGGCAACATGATGCAATGGTGGAACAATGCAACCATCAAGACATTCCGCGAGCGGGCCCAGTGCATCATCGATCAGTATTCGCGCTACAAAATCGACGAGGTGGGCCTGTACATGGACGGGCGGATGACGCAGGGCGAAAACATTGCCGACAACGGGGGCCTCAAGCAGTCGTATCGGGCATACCGCAAGTGGGTTAGCCAGCACGGGTCGGAACCGGACCTGCCGGGGCTAAACATGACCCACGATCAGCTGTTCTTTCTCAACTACGCCCAGATTTGGTGCGGTTCGATGCGGCCCGAGGACGCACTGACCAAGATCCGGTCGTCGGTACACTCGCCCGGCATAATACGTGTGATTGGGCCGCTGTCGAACTCGCGCGACTTTGCCGAAGCGTACCGGTGTCCGCTCGGTTCGCCGATGAATCCTGTTAGTAAATGTAGCGTGTGGTAAGATAAAAGCTGGTCTTTAGGTGTAGTGTTTGTTTGTTTGTTTGTGTTTTTAAGGAAACCTGTAATAATATTAACGATAATTATGATTGCTATTCTTATGATTGCTGTAACTACTATGATTTCGTACAAAGGCACATATCAACAGTTGAATAGTTGAGCTA] [+] EMBL BM631864 [CCGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAAGCTCGGCATGGCGGTCGGCGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGAGACGGCACTGACCATGATACACACGATACGGGAGGCATTTAACGAGCTGCTGGCGGACATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCAGACGCGATGAACGAACGGATCGGCTATCCGGACATTCTGACCAATGCGGACGAGTTGGAGAAGGAGTACGTGAATCTCACGATACACGGTGGTTTGTTTTTGGAAAACATTCTAAGCATACTGAAGTGGGAGGCTGAGCGGAACCTGCAGCTGCTGCGCAAACCGGTTGACAAAAACAAGTGGGCAACGGAACCGGCCGTTGTAAACGCGTTCTATAATCCCAACAAGAATGATATAGTATTTCCCGCCGGCATTCTGCAGCCGCTGTTCTACAGCCAAAACTTCCCGAAATCGCTCAACTACGGCGGCATCGGGGTGGTGATCGGGCACGAAATAACGCACGGGTTCGACGACAAGGGCCGCCAGTTCGATAAGGACGGCAACATGATGCAATGGTGGAACAATGCAACCATCAAGACATTCCGCGAGCGGGCCCAGTGCATCATCGATCAGTATTCGCGCTACAAAATCGACGAGGTGGGCCTGTACATGG ] [+] EMBL BX616094 [ CGGCGGCATCGGGGTGGTGATCGGGCACGAAATAACGCACGGGTTCGACGACAAGGGCCGCCAGTTCGACAAGGACGGCAACATGATGCAATGGTGGAACAATGCAACCATCAAGACATTCCGCGAGCGGGCCCAGTGCATCATCGATCAGTATTCGCGCTACAAAATCGACGAGGTGGGCCTGTACATGGACGGGCGGATGACGCAGGGCGAAAACATTGCCGACAACGGGGGCCTCAAGCAGTCGTATCGGGCATACCGCAAGTGGGTTAGCCAGCACGGGTCGGAACCGGACCTGCCGGGGCTAAACATGACCCACGATCAGCTGTTCTTTCTCAACTACGCCCAGATTTGGTGCGGTTCGATGCGGCCCGAGGACGCACTGACCAAGATCCGGTCGTCGGTACACTCGCCCGGCATAATACGTGTGATTGGGCCGCTGTCGAACTCGCGCGACTTTGCCGAAGCGTACCGGTGTCCGCTCGGTTCGCCGATGAATCCTGTTAGTAAATGTAGCGTGTGGTAAGATAAAAGCTGGTCTTTAGGTGTAGTGTTTGTTTGTTTGTTTGTGTTTTTAAGGAAACCTGTAATAATATTAACGATAATTATGATTGCTATTCTTATGATTGCTGTAACTACTATGATTTCGTACAAAGGCACATATCAACAGTTGAATAGTTGAGCTA] consensusID : consensus_3890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [CCCCCGAGGTTNACATATCGACGACTACCAGAAGGAGCGCGTCGAGTTTCGGCGCAAGCTGCTCGGCATCCAGTCGGAGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAAGCTCGGCATGGCGGTCGGTGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGAGACGTGCACTGACCATGATACACACGATACGGGAGTGCATTTAACGAGCTGCTGGCGGACATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCGGACGCGATGAACCGAACGGATCCGGGTATCCGGACATTCTTGACCAATGCGGACGANTTTGGAGAAGGAGTACGTTGAATCTCACGATACACGGTTGGTTTGGATTTGGAAAACATTCTAAGCATACTGAAAGTGGGGAGGCTGANCGGAACCTTGCAGCTTGCTGCGGCAAACACGGGTTGACACAAAACAAGGTTGGCNAACGGAACCGGCGTTTGTAAAAACGCCGGTTCTATTAATTCCCAAACAAGAAATGATATAGTATTTCCCCGGCGGCCATTCTTGGAGGCCGCCTTGTTACTAAACAAGGCCAAAAAACGTTTCCCCGAAACTCCGCGTCCACACTAACGAGGCGGGGCATCACGCAGGGTAGGGTTGGCATACGGGGGCACCGAAAATTAACTCGCGACCGGGGGTTTCCNAAGCACACACAGGGGGCCNCCCACANGTTTCAGAACCACANGGACNGGNACCATNATGCACTCGTGGAC] [+] EMBL AL695540 [CCCCCGAGGTTNACATATCGACGACTACCAGAAGGAGCGCGTCGAGTTTCGGCGCAAGCTGCTCGGCATCCAGTCGGAGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAAGCTCGGCATGGCGGTCGGTGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGAGACGTGCACTGACCATGATACACACGATACGGGAGTGCATTTAACGAGCTGCTGGCGGACATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCGGACGCGATGAACCGAACGGATCCGGGTATCCGGACATTCTTGACCAATGCGGACGANTTTGGAGAAGGAGTACGTTGAATCTCACGATACACGGTTGGTTTGGATTTGGAAAACATTCTAAGCATACTGAAAGTGGGGAGGCTGANCGGAACCTTGCAGCTTGCTGCGGCAAACACGGGTTGACACAAAACAAGGTTGGCNAACGGAACCGGCGTTTGTAAAAACGCCGGTTCTATTAATTCCCAAACAAGAAATGATATAGTATTTCCCCGGCGGCCATTCTTGGAGGCCGCCTTGTTACTAAACAAGGCCAAAAAACGTTTCCCCGAAACTCCGCGTCCACACTAACGAGGCGGGGCATCACGCAGGGTAGGGTTGGCATACGGGGGCACCGAAAATTAACTCGCGACCGGGGGTTTCCNAAGCACACACAGGGGGCCNCCCACANGTTTCAGAACCACANGGACNGGNACCATNATGCACTCGTGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3890#0 ------------------------------------------------------------ consensus_3890#1 CCCCCGAGGTTNACATATCGACGACTACCAGAAGGAGCGCGTCGAGTTTCGGCGCAAGCT 60 consensus_3890#0 ----------------CCGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAA 44 consensus_3890#1 GCTCGGCATCCAGTCGGAGCGCAACCGGTGGTCGCAGTGCGTCGAGTGGACGAACAAGAA 120 ****************************************** consensus_3890#0 GCTCGGCATGGCGGTCGGCGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGA 104 consensus_3890#1 GCTCGGCATGGCGGTCGGTGCACTGTTCATACGGGACAACTTCAACCAGGAAAGCAAGGA 180 ****************** ***************************************** consensus_3890#0 GACG-GCACTGACCATGATACACACGATACGGGAG-GCATTTAACGAGCTGCTGGCGGAC 162 consensus_3890#1 GACGTGCACTGACCATGATACACACGATACGGGAGTGCATTTAACGAGCTGCTGGCGGAC 240 **** ****************************** ************************ consensus_3890#0 ATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCAGACGCGATGAAC 222 consensus_3890#1 ATTGACTGGATGGATGACGAGACGCGTGCCGTCGCGAAGGAGAAGGCGGACGCGATGAAC 300 *********************************************** ************ consensus_3890#0 -GAACGGATC-GGCTATCCGGACATTCT-GACCAATGCGGACGAGTT-GGAGAAGGAGTA 278 consensus_3890#1 CGAACGGATCCGGGTATCCGGACATTCTTGACCAATGCGGACGANTTTGGAGAAGGAGTA 360 ********* ** ************** *************** ** ************ consensus_3890#0 CGT-GAATCTCACGATACACGGT-GGTTTGTTTTTGGAAAACATTCTAAGCATACTGAAG 336 consensus_3890#1 CGTTGAATCTCACGATACACGGTTGGTTTGGATTTGGAAAACATTCTAAGCATACTGAAA 420 *** ******************* ****** *************************** consensus_3890#0 T--GGGAGGCTGAGCGGAACCT-GCAGCT-GCTGCG-CAAACC--GGTTGACA-AAAACA 388 consensus_3890#1 GTGGGGAGGCTGANCGGAACCTTGCAGCTTGCTGCGGCAAACACGGGTTGACACAAAACA 480 ********** ******** ****** ****** ***** ******** ****** consensus_3890#0 AG--TGGGCAACGGAACCGGCCGTTGTAAACGCG----TTCTAT-AATCCC--AACAAGA 439 consensus_3890#1 AGGTTGGCNAACGGAACCGGCGTTTGTAAAAACGCCGGTTCTATTAATTCCCAAACAAGA 540 ** *** ************ ******* ** ****** *** ** ******* consensus_3890#0 A-TGATATAGTATTTCCC-GCCGGCATTCTGCAGCCGCTGTTCTACAGCCAAA-ACTTCC 496 consensus_3890#1 AATGATATAGTATTTCCCCGGCGGCCATTCTTGGAGGCCGCCTTGTTACTAAACAAGGCC 600 * **************** * **** * * ** * * * *** * ** consensus_3890#0 CGAAATCGCTCAACTACGGCGGCATCGGGGTGGTGATCGGGCACGAAATAACGCACGGGT 556 consensus_3890#1 AAAAAACGTTTCCCCGAAACTCCGCGTCCACACTAACGAGGCGGGGCATCACGCA-GGGT 659 *** ** * * * * * * *** * ** ***** **** consensus_3890#0 TCGACGACAAGGGCCGCCAGTTCGATAAGGACGGCAACATGATGCAATGGTGGAACAATG 616 consensus_3890#1 ---------AGGGTTGGC------ATACGGG-GGCACCGAAAATTAACT---------CG 694 **** * * *** ** **** * * ** * consensus_3890#0 CAACCATCAAGACATTCCGCGAGCGGGCCCAGTGCATCATCGATCAGTATTCGCGCTACA 676 consensus_3890#1 CGACCG----GGGGTTTCCNAAGCACACACAGGGGGCCNCCCACANGTTTCAGAACCACA 750 * *** * ** * *** * *** * * * * ** * * * *** consensus_3890#0 AAATCGACGAGGTGGGCCTGTACATGGACGGGCGGATGACGCAGGGCGAAAACATTGCCG 736 consensus_3890#1 NGGACNGGNACCATNATGCACTCGTGGAC------------------------------- 779 * * * ***** consensus_3890#0 ACAACGGGGGCCTCAAGCAGTCGTATCGGGCATACCGCAAGTGGGTTAGCCAGCACGGGT 796 consensus_3890#1 ------------------------------------------------------------ consensus_3890#0 CGGAACCGGACCTGCCGGGGCTAAACATGACCCACGATCAGCTGTTCTTTCTCAACTACG 856 consensus_3890#1 ------------------------------------------------------------ consensus_3890#0 CCCAGATTTGGTGCGGTTCGATGCGGCCCGAGGACGCACTGACCAAGATCCGGTCGTCGG 916 consensus_3890#1 ------------------------------------------------------------ consensus_3890#0 TACACTCGCCCGGCATAATACGTGTGATTGGGCCGCTGTCGAACTCGCGCGACTTTGCCG 976 consensus_3890#1 ------------------------------------------------------------ consensus_3890#0 AAGCGTACCGGTGTCCGCTCGGTTCGCCGATGAATCCTGTTAGTAAATGTAGCGTGTGGT 1036 consensus_3890#1 ------------------------------------------------------------ consensus_3890#0 AAGATAAAAGCTGGTCTTTAGGTGTAGTGTTTGTTTGTTTGTTTGTGTTTTTAAGGAAAC 1096 consensus_3890#1 ------------------------------------------------------------ consensus_3890#0 CTGTAATAATATTAACGATAATTATGATTGCTATTCTTATGATTGCTGTAACTACTATGA 1156 consensus_3890#1 ------------------------------------------------------------ consensus_3890#0 TTTCGTACAAAGGCACATATCAACAGTTGAATAGTTGAGCTA 1198 consensus_3890#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||