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Anopheles gambiae
cluster # 3900 cluster # 3900       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3900#0 length = 1222 sequences # 2  
consensus_3900#1 length = 535 sequences # 1  

consensusID : consensus_3900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1222
fasta sequence
                              [AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTCGGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGAACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCGGCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTACTTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCAGCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACAAGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAAGTTCGTCTCGAGCCTATGGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTGCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAACGTTGCCCAGCTGCAATGGCCGGAGTATTTCGTACAGCTGACGCAGGGCGTTCGGCGCTACCTCAACAACGAGCATCCCAAGTCGCTCGATGCCGCCCGCCGAAAGGACAAAGTCCTGTTCGTGGTAGATTTGGTGTTCCAGGTGCTGATCTTCGCCCTGCTGGGGTGGCTGCTCGCCACCGTGTTCGGCACCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCTATTTACTCTTCAGTCTGCTCTAAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCGATCGTCGGTCAAAGGGGGGGGTTGAAACAGCCGTATTAAATTGCATTTCACTATTACATTGCCCGTTGCCGAGCACGATCGTTCCACTTTTACTCTCTCTTGCCACACACACAAACACCCTCATACCTCATACTCACTCGTTAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAAGACTCCGCATCATCCCGCAGCTTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAATGATATTTCTTCTAATGNGTAAGCTACTANGGAGAAGCGTACA]

[+] EMBL BX620447             [AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTCGGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGAACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCGGCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTACTTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCAGCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACAAGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAAGTTCGTCTCGAGCCTATGGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTGCGGGTGACCGGCGGTCGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX621357             [                                                                                                                                                                                                                                                                                                                                                                                                   aggCACGGTTGAAGTTCGTCTCGAGCCTATGGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTGCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAACGTTGCCCAGCTGCAATGGCCGGAGTATTTCGTACAGCTGACGCAGGGCGTTCGGCGCTACCTCAACAACGAGCATCCCAAGTCGCTCGATGCCGCCCGCCGAAAGGACAAAGTCCTGTTCGTGGTAGATTTGGTGTTCCAGGTGCTGATCTTCGCCCTGCTGGGGTGGCTGCTCGCCACCGTGTTCGGCACCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCTATTTACTCTTCAGTCTGCTCTAAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCGATCGTCGGTCAAAGGGGGGGGTTGAAACAGCCGTATTAAATTGCATTTCACTATTACATTGCCCGTTGCCGAGCACGATCGTTCCACTTTTACTCTCTCTTGCCACACACACAAACACCCTCATACCTCATACTCACTCGTTAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAAGACTCCGCATCATCCCGCAGCTTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAATGATATTTCTTCTAATGNGTAAGCTACTANGGAGAAGCGTACA]


>consensus_3900#0 AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTC GGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGA ACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCG GCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTAC TTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCA GCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACA AGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAAGTTCGTCTCGAGCCTATGGG TGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGC TGCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTCGC TGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCAGC AGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAACGTTGCCCAGC TGCAATGGCCGGAGTATTTCGTACAGCTGACGCAGGGCGTTCGGCGCTACCTCAACAACG AGCATCCCAAGTCGCTCGATGCCGCCCGCCGAAAGGACAAAGTCCTGTTCGTGGTAGATT TGGTGTTCCAGGTGCTGATCTTCGCCCTGCTGGGGTGGCTGCTCGCCACCGTGTTCGGCA CCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCTATTTACTCTTCAGTCTGCTCT AAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCGATCGTCGGTCAAAGGGGGGGG TTGAAACAGCCGTATTAAATTGCATTTCACTATTACATTGCCCGTTGCCGAGCACGATCG TTCCACTTTTACTCTCTCTTGCCACACACACAAACACCCTCATACCTCATACTCACTCGT TAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAAGACTCCGCATCATCCCGCAGC TTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAATGATATTTCTTCTAATGNGTA AGCTACTANGGAGAAGCGTACA



consensusID : consensus_3900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence
                              [CCGAGGTTAAATCGGCATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTAGCGGGTGACCGGCGGTCGGCCATGCTGATGCGCCGCAACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCCCAGCATGCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGGCCGCTACTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAAGGGACAAAAGNTCNCATGTNNACAGATGNGTAGCAATANAGGGNTGGTTACCAGAGACTGCTGAATCTTTTCCNAGACCCGAACTGGGANNANATGGACCTGGCATCGACCAACCGGTGNT]

[+] EMBL AL695666             [CCGAGGTTAAATCGGCATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTAGCGGGTGACCGGCGGTCGGCCATGCTGATGCGCCGCAACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCCCAGCATGCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGGCCGCTACTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAAGGGACAAAAGNTCNCATGTNNACAGATGNGTAGCAATANAGGGNTGGTTACCAGAGACTGCTGAATCTTTTCCNAGACCCGAACTGGGANNANATGGACCTGGCATCGACCAACCGGTGNT]


>consensus_3900#1 CCGAGGTTAAATCGGCATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTGGTGT ACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTAG CGGGTGACCGGCGGTCGGCCATGCTGATGCGCCGCAACACGAACGTGTGGGAGTCGCTGA ACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGCACCCAGCAGCT GGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCCCAGCAT GCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGGCCGCTA CTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAAGGGACA AAAGNTCNCATGTNNACAGATGNGTAGCAATANAGGGNTGGTTACCAGAGACTGCTGAAT CTTTTCCNAGACCCGAACTGGGANNANATGGACCTGGCATCGACCAACCGGTGNT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3900#0      AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTC 60
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      GGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGA 120
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      ACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCG 180
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      GCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTAC 240
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      TTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCA 300
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      GCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACA 360
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      AGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAA-GTTCGTCTCGAGCCTATGG 419
consensus_3900#1      ---CCGAGGTTAAATCGGC-ATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTG 56
                          *  * * ******** ******************** ******** ******** *

consensus_3900#0      GTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTG 479
consensus_3900#1      GTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTG 116
                      ************************************************************

consensus_3900#0      CT-GCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTC 538
consensus_3900#1      CTAGCGGGTGACCGGCGGTCGGCC-ATGCTGATGCGCCGCAACACGAACGTGTGGGAGTC 175
                      ** ********************* ************* * *******************

consensus_3900#0      GCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCA 598
consensus_3900#1      GCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGC-ACCCA 234
                      ************************************************ ***** *****

consensus_3900#0      GCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAA-CGTT-GCC 656
consensus_3900#1      GCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCC 294
                      *************************************************** **** ***

consensus_3900#0      CAGC-TGCAA----TGGCCGGAG-TATTTC--GTACAGCTGACGCAGGGCG----TTCGG 704
consensus_3900#1      CAGCATGCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGG 354
                      **** *** *     * * **** *****   *************  *  *    *****

consensus_3900#0      CGCTACCTCAACAACGA--GCATCCCAAGTCGCTC--GATGCCGCCCGCCGAAAGGACAA 760
consensus_3900#1      CCGCTACTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAA 414
                      *     **********   *************     ******      *  * * * **

consensus_3900#0      AGTCCTGTTCGTGGTAGATTTGGTGTTC-CAGGTGCTGATCTTCGCCCTGCTGGGGTGGC 819
consensus_3900#1      GGGAC-------AAAAGNTCNCATGTNNACAGATGNG-----TAGCAATANAGGGNTGGT 462
                       *  *          ** *    ***   *** **       * **  *   *** *** 

consensus_3900#0      TGCTCGCCACCGTGTTCGGCACCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCT 879
consensus_3900#1      TACCAGAGAC--TGCTGAATCTTTTCCNAGACCCGAACTGGGANNANATGGAC--CTGGC 518
                      * *  *  **  ** *       * *     *  *  *****   *      *    *  

consensus_3900#0      ATTTACTCTTCAGTCTGCTCTAAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCG 939
consensus_3900#1      ATCGACCAACCGGTGNT------------------------------------------- 535
                      **  **    * **                                              

consensus_3900#0      ATCGTCGGTCAAAGGGGGGGGTTGAAACAGCCGTATTAAATTGCATTTCACTATTACATT 999
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      GCCCGTTGCCGAGCACGATCGTTCCACTTTTACTCTCTCTTGCCACACACACAAACACCC 1059
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      TCATACCTCATACTCACTCGTTAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAA 1119
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      GACTCCGCATCATCCCGCAGCTTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAA 1179
consensus_3900#1      ------------------------------------------------------------
                                                                                  

consensus_3900#0      TGATATTTCTTCTAATGNGTAAGCTACTANGGAGAAGCGTACA 1222
consensus_3900#1      -------------------------------------------
                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)