These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1222 fasta sequence [AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTCGGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGAACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCGGCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTACTTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCAGCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACAAGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAAGTTCGTCTCGAGCCTATGGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTGCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAACGTTGCCCAGCTGCAATGGCCGGAGTATTTCGTACAGCTGACGCAGGGCGTTCGGCGCTACCTCAACAACGAGCATCCCAAGTCGCTCGATGCCGCCCGCCGAAAGGACAAAGTCCTGTTCGTGGTAGATTTGGTGTTCCAGGTGCTGATCTTCGCCCTGCTGGGGTGGCTGCTCGCCACCGTGTTCGGCACCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCTATTTACTCTTCAGTCTGCTCTAAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCGATCGTCGGTCAAAGGGGGGGGTTGAAACAGCCGTATTAAATTGCATTTCACTATTACATTGCCCGTTGCCGAGCACGATCGTTCCACTTTTACTCTCTCTTGCCACACACACAAACACCCTCATACCTCATACTCACTCGTTAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAAGACTCCGCATCATCCCGCAGCTTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAATGATATTTCTTCTAATGNGTAAGCTACTANGGAGAAGCGTACA] [+] EMBL BX620447 [AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTCGGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGAACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCGGCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTACTTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCAGCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACAAGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAAGTTCGTCTCGAGCCTATGGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTGCGGGTGACCGGCGGTCGGCC ] [+] EMBL BX621357 [ aggCACGGTTGAAGTTCGTCTCGAGCCTATGGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTGCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAACGTTGCCCAGCTGCAATGGCCGGAGTATTTCGTACAGCTGACGCAGGGCGTTCGGCGCTACCTCAACAACGAGCATCCCAAGTCGCTCGATGCCGCCCGCCGAAAGGACAAAGTCCTGTTCGTGGTAGATTTGGTGTTCCAGGTGCTGATCTTCGCCCTGCTGGGGTGGCTGCTCGCCACCGTGTTCGGCACCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCTATTTACTCTTCAGTCTGCTCTAAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCGATCGTCGGTCAAAGGGGGGGGTTGAAACAGCCGTATTAAATTGCATTTCACTATTACATTGCCCGTTGCCGAGCACGATCGTTCCACTTTTACTCTCTCTTGCCACACACACAAACACCCTCATACCTCATACTCACTCGTTAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAAGACTCCGCATCATCCCGCAGCTTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAATGATATTTCTTCTAATGNGTAAGCTACTANGGAGAAGCGTACA] consensusID : consensus_3900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [CCGAGGTTAAATCGGCATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTAGCGGGTGACCGGCGGTCGGCCATGCTGATGCGCCGCAACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCCCAGCATGCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGGCCGCTACTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAAGGGACAAAAGNTCNCATGTNNACAGATGNGTAGCAATANAGGGNTGGTTACCAGAGACTGCTGAATCTTTTCCNAGACCCGAACTGGGANNANATGGACCTGGCATCGACCAACCGGTGNT] [+] EMBL AL695666 [CCGAGGTTAAATCGGCATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTAGCGGGTGACCGGCGGTCGGCCATGCTGATGCGCCGCAACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCCCAGCATGCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGGCCGCTACTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAAGGGACAAAAGNTCNCATGTNNACAGATGNGTAGCAATANAGGGNTGGTTACCAGAGACTGCTGAATCTTTTCCNAGACCCGAACTGGGANNANATGGACCTGGCATCGACCAACCGGTGNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3900#0 AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTC 60 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 GGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGA 120 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 ACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCG 180 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 GCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTAC 240 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 TTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCA 300 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 GCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACA 360 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 AGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAA-GTTCGTCTCGAGCCTATGG 419 consensus_3900#1 ---CCGAGGTTAAATCGGC-ATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTG 56 * * * ******** ******************** ******** ******** * consensus_3900#0 GTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTG 479 consensus_3900#1 GTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTG 116 ************************************************************ consensus_3900#0 CT-GCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTC 538 consensus_3900#1 CTAGCGGGTGACCGGCGGTCGGCC-ATGCTGATGCGCCGCAACACGAACGTGTGGGAGTC 175 ** ********************* ************* * ******************* consensus_3900#0 GCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCA 598 consensus_3900#1 GCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGC-ACCCA 234 ************************************************ ***** ***** consensus_3900#0 GCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAA-CGTT-GCC 656 consensus_3900#1 GCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCC 294 *************************************************** **** *** consensus_3900#0 CAGC-TGCAA----TGGCCGGAG-TATTTC--GTACAGCTGACGCAGGGCG----TTCGG 704 consensus_3900#1 CAGCATGCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGG 354 **** *** * * * **** ***** ************* * * ***** consensus_3900#0 CGCTACCTCAACAACGA--GCATCCCAAGTCGCTC--GATGCCGCCCGCCGAAAGGACAA 760 consensus_3900#1 CCGCTACTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAA 414 * ********** ************* ****** * * * * ** consensus_3900#0 AGTCCTGTTCGTGGTAGATTTGGTGTTC-CAGGTGCTGATCTTCGCCCTGCTGGGGTGGC 819 consensus_3900#1 GGGAC-------AAAAGNTCNCATGTNNACAGATGNG-----TAGCAATANAGGGNTGGT 462 * * ** * *** *** ** * ** * *** *** consensus_3900#0 TGCTCGCCACCGTGTTCGGCACCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCT 879 consensus_3900#1 TACCAGAGAC--TGCTGAATCTTTTCCNAGACCCGAACTGGGANNANATGGAC--CTGGC 518 * * * ** ** * * * * * ***** * * * consensus_3900#0 ATTTACTCTTCAGTCTGCTCTAAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCG 939 consensus_3900#1 ATCGACCAACCGGTGNT------------------------------------------- 535 ** ** * ** consensus_3900#0 ATCGTCGGTCAAAGGGGGGGGTTGAAACAGCCGTATTAAATTGCATTTCACTATTACATT 999 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 GCCCGTTGCCGAGCACGATCGTTCCACTTTTACTCTCTCTTGCCACACACACAAACACCC 1059 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 TCATACCTCATACTCACTCGTTAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAA 1119 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 GACTCCGCATCATCCCGCAGCTTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAA 1179 consensus_3900#1 ------------------------------------------------------------ consensus_3900#0 TGATATTTCTTCTAATGNGTAAGCTACTANGGAGAAGCGTACA 1222 consensus_3900#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||