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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 729 fasta sequence
[ATGCTCGATGGCAGATCGCCCCGACGGTTATTCGGATAATGGTACAAATTCCGTCGGTGCAAAGANACGCACTTCACCAAGTCTACCAGATGCTGCATGACGAAGCTCAAAACCGTCAAATCAATAACTATCTAGCAGAAGAAGGAATTGAATGGCACCTTATTACCACCTCGTGCACCAAACTTCGGTGTGGCTTTTGGGAAGCCGCCGTGAAGGTGGCCAAGAAGCTTATTTGGTCAGGCACGTATAGGTGTCTCGCTACTATCTTATGAGGATCTGGCAACAGTGCTGATCAAAATCGACAGGCTGCATGAATTCTCGTACCGTTGACGCCGCTATTCGAATGACCCTAACGATATTGTCAGCTTTAACACCGAGTCATATTACTCATCAAGGGANTGATGCGTCCACCTCCAGAAACTGACCATACGGGATGTCCCGACCACATCGACTCGACCAGTATCAGCGGTTGCAGACAGTACGCTCCAACCATAATCTTGGCNAGACCGCTGGCGTACCAGAGTACCTTCCATGAGCTATGCTTCAGCAACAGCCGACGTAATCCANCCAGAACAAAACAAGTCCTCTATCGGAGACATCGTCATTATCAAGGATGAACAGCTCCCACCCGCTCGTTGGCCCTTGGCTCGAATCGTGGAAGTACACCCTGGGTAGGATGGGATTGTGCGTGTTGTAACCTTAAAAACTGCCTCTGGGGTAATGAANAGA]
[+] EMBL AL695968 [ATGCTCGATGGCAGATCGCCCCGACGGTTATTCGGATAATGGTACAAATTCCGTCGGTGCAAAGANACGCACTTCACCAAGTCTACCAGATGCTGCATGACGAAGCTCAAAACCGTCAAATCAATAACTATCTAGCAGAAGAAGGAATTGAATGGCACCTTATTACCACCTCGTGCACCAAACTTCGGTGTGGCTTTTGGGAAGCCGCCGTGAAGGTGGCCAAGAAGCTTATTTGGTCAGGCACGTATAGGTGTCTCGCTACTATCTTATGAGGATCTGGCAACAGTGCTGATCAAAATCGACAGGCTGCATGAATTCTCGTACCGTTGACGCCGCTATTCGAATGACCCTAACGATATTGTCAGCTTTAACACCGAGTCATATTACTCATCAAGGGANTGATGCGTCCACCTCCAGAAACTGACCATACGGGATGTCCCGACCACATCGACTCGACCAGTATCAGCGGTTGCAGACAGTACGCTCCAACCATAATCTTGGCNAGACCGCTGGCGTACCAGAGTACCTTCCATGAGCTATGCTTCAGCAACAGCCGACGTAATCCANCCAGAACAAAACAAGTCCTCTATCGGA ]
[+] EMBL BX627123 [ CTGCATGACGAAGCTCAAAACCGTCAAATCAATAACTATCTAGCAGAAGAAGGAATTGAATGGCACCTTATT CCACCTCGTGCACCAAACTTCGGTG GGC TTTGGGAAGCCGCCGTGAAGGTGGCCAAGAAGCT TTTGGTCAGGCA GT TAGGTGTCTCGCTACTATCTTATGAGGATCTGGCAACAGTGCTGATCAAAATCGA AGGCTGCATGAATTCTCGT CCGTTGACGCCGCT TTCGAATGACCCTAACGAT TTGTCAGCTTTAACACCGAGTCAT TTTCTCATCAAGGGAATGATGCGTCCACCTCCAGAAACTGA CATACGGGATGTCCCGACCA ATCGACTCGACCAGTATCAGCGGTTGCAGA AGTACGCT CAA CAT TTC TGGC AG CGCTGGCGTA CAGAGTACCTT CATGAGCT TGC TCAGCAACAG CGACGTAATCCA CCAGAAC AACAAGT CTCTATCGGAGACATCGTCATTATCAAGGATGAACAGCTCCCACCCGCTCGTTGGCCCTTGGCTCGAATCGTGGAAGTACACCCTGGGTAGGATGGGATTGTGCGTGTTGTAACCTTAAAAACTGCCTCTGGGGTAATGAANAGA]
consensusID : consensus_3902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[AGATGCCCGAGGCTCGCTATATCTTATGAGGATCTGGCACAGTGCTGATCAAAATCGAAGGCTGCATGAATTCTCGTCCGTTGACGCCGCTTTCGAATGACCCTAACGATTTGTCAGCTTTAACACCGAGTCATTTTCTCATCAAGGGAATGATGCGTCCACCTCCAGAAACTGACATACGGGGATGTCCGACCAATCGGACTCGACCCAGTATCAGCGGGTTGGCAAGGAAAGGTAACCGGCTTCAAAACAATTTTTCTGGGCAAGCGCCTGGGCCGGTAACCAGGAAGTTACCCTTTCAATTGAAGCTTTGCTTCCAGGCAAAACAAGGCGGAACCGTAAATTCCCACCCAAGGAAAA]
[+] EMBL AL695699 [AGATGCCCGAGGCTCGCTATATCTTATGAGGATCTGGCACAGTGCTGATCAAAATCGAAGGCTGCATGAATTCTCGTCCGTTGACGCCGCTTTCGAATGACCCTAACGATTTGTCAGCTTTAACACCGAGTCATTTTCTCATCAAGGGAATGATGCGTCCACCTCCAGAAACTGACATACGGGGATGTCCGACCAATCGGACTCGACCCAGTATCAGCGGGTTGGCAAGGAAAGGTAACCGGCTTCAAAACAATTTTTCTGGGCAAGCGCCTGGGCCGGTAACCAGGAAGTTACCCTTTCAATTGAAGCTTTGCTTCCAGGCAAAACAAGGCGGAACCGTAAATTCCCACCCAAGGAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3902#0 ATGCTCGATGGCAGATCGCCCCGACGGTTATTCGGATAATGGTACAAATTCCGTCGGTGC 60
consensus_3902#1 ------------------------------------------------------------
consensus_3902#0 AAAGANACGCACTTCACCAAGTCTACCAGATGCTGCATGACGAAGCTCAAAACCGTCAAA 120
consensus_3902#1 ------------------------------------------------------------
consensus_3902#0 TCAATAACTATCTAGCAGAAGAAGGAATTGAATGGCACCTTATTACCACCTCGTGCACCA 180
consensus_3902#1 ------------------------------------------------------------
consensus_3902#0 AACTTCGGTGTGGCTTTTGGGAAGCCGCCGTGAAGGTGGCCAAGAAGCTTATTTGGTCAG 240
consensus_3902#1 ------------------------------------------------------------
consensus_3902#0 GCACGTATAGGTGTCTCGCTACTATCTTATGAGGATCTGGCAACAGTGCTGATCAAAATC 300
consensus_3902#1 --AGATGCCCGAGGCTCGCTA-TATCTTATGAGGATCTGGCA-CAGTGCTGATCAAAATC 56
* * * * ******* ******************** *****************
consensus_3902#0 GACAGGCTGCATGAATTCTCGTACCGTTGACGCCGCTATTCGAATGACCCTAACGATATT 360
consensus_3902#1 GA-AGGCTGCATGAATTCTCGT-CCGTTGACGCCGCT-TTCGAATGACCCTAACGAT-TT 112
** ******************* ************** ******************* **
consensus_3902#0 GTCAGCTTTAACACCGAGTCATATTACTCATCAAGGGANTGATGCGTCCACCTCCAGAAA 420
consensus_3902#1 GTCAGCTTTAACACCGAGTCAT-TTTCTCATCAAGGGAATGATGCGTCCACCTCCAGAAA 171
********************** ** ************ *********************
consensus_3902#0 CTGACCATACGGGATGTCCCGACCACATCGACTCGACC-AGTATCAGCGGTTGCAGACAG 479
consensus_3902#1 CTGAC-ATACGGGGATGTCCGACCAATCGGACTCGACCCAGTATCAGCGG--GTTGGCAA 228
***** ******* ******* ********* *********** * * **
consensus_3902#0 TACGCTCCAACCATAATCTTGGCNAGACCGCTGG-CGTACCAGAGTACCTTCCATGAGCT 538
consensus_3902#1 GGAAAGGTAACCGGCTTCAAAACAATTTTTCTGGGCAAGCGCCTGGGCCGGTAACCAGG- 287
**** ** * * **** * * * ** * **
consensus_3902#0 ATGCTTCAGCAACAGCCGACGTAATCCANCCAGAACAAAACAAGTCCTCTATCGGAGACA 598
consensus_3902#1 AAGTTACCCTTTCAATTGAAGCTTTGCTTCCAGG-CAAAACAAGGCGGA-ACCGTAAAT- 344
* * * * ** ** * * * **** ********* * * ** * *
consensus_3902#0 TCGTCATTATCAAGGATGAACAGCTCCCACCCGCTCGTTGGCCCTTGGCTCGAATCGTGG 658
consensus_3902#1 ---TCCCACCCAAGGAAAA----------------------------------------- 360
** ****** *
consensus_3902#0 AAGTACACCCTGGGTAGGATGGGATTGTGCGTGTTGTAACCTTAAAAACTGCCTCTGGGG 718
consensus_3902#1 ------------------------------------------------------------
consensus_3902#0 TAATGAANAGA 729
consensus_3902#1 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||