cluster # 3903

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Anopheles gambiae
cluster # 3903 cluster # 3903 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3903#0 length = 624 sequences # 2

consensus_3903#1 length = 403 sequences # 1

consensusID : consensus_3903#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence

                              [TGGTTTCGCCGATGACGGTACGCCGGTCCAGCCCAGCCGTAGCAGCGGCCGACGGCCTACTGTACGTGGCTGGTGGTGATCAGCCCTGCGAGATCAACTTTTACCGGGCGCAAATTACAATCGCTTCGTTCGAGTGCTACAATCCCATCACGGACTAGTGGAAGGTGTGCCCGGATCTACCGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAACCCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAAAATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGCGATTGAATAGCAAACCACTCGCGTGTGTGCTACCCCCGTGCAAACGCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTTCTTCTTCTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTTACATTTGATCAACACTTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAAATGTTTTAAACATATAGATGTGCAACTAGATATATTATAGTGTGTAGTACCACCACCACCATATTAATCTGCGTACACGATCCCCAGCCCGATCCTTTT]

[+] EMBL BX617619             [TGGTTTCGCCGATGACGGTACGCCGGTCCAGCCCAGCCGTAGCAGCGGCCGACGGCCTACTGTACGTGGCTGGTGGTGATCAGCCCTGCGAGATCAACTTTTACCGGGCGCAAATTACAATCGCTTCGTTCGAGTGCTACAATCCCATCACGGACTAGTGGAAGGTGTGCCCGGATCTACCGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAACCCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAAAATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGCGATTGAATAGCAAACCACTCGCGTGTGTGCTACCCCCGTGCAAACGCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTTCTTCTTCTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTTACATTTGATCAACACTTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAAATGTTTTAAACATATAGATGTGCAACTAGATATATTATAGTGTGTAGTACCACCACCACCATATTAATCTGCGTACACGATCCCCAGCCCGATCCTTTT]
[+] EMBL BX615202             [                                                                                                                                                                                                                            AAAAAAGGCACAAAAACAACCTCCTTTGGGGATTTATCTCTATTCCTCGGTCCAATCGGCGCTCCTAACATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGCGATTGAATAGCAAACCACTCGCGTGTGTGCTACCCCCGTGCAAACCCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTTCTTCTTCTCGTTTGTTTGATCGTTGTTTCTTTCCATGTTACATTTGATCATCAGTTTTTCGATCA                                                                                                                                     ]




>consensus_3903#0
TGGTTTCGCCGATGACGGTACGCCGGTCCAGCCCAGCCGTAGCAGCGGCCGACGGCCTAC
TGTACGTGGCTGGTGGTGATCAGCCCTGCGAGATCAACTTTTACCGGGCGCAAATTACAA
TCGCTTCGTTCGAGTGCTACAATCCCATCACGGACTAGTGGAAGGTGTGCCCGGATCTAC
CGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAAC
CCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAAAATTCGCCATCG
CAAAACCAAAGATGCGCTTATAAAGCGCTGCGATTGAATAGCAAACCACTCGCGTGTGTG
CTACCCCCGTGCAAACGCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATAC
GTATTTCTTCTTCTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTTACATTTGATCAACAC
TTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAAATGTTTTAAACATAT
AGATGTGCAACTAGATATATTATAGTGTGTAGTACCACCACCACCATATTAATCTGCGTA
CACGATCCCCAGCCCGATCCTTTT

consensusID : consensus_3903#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 403
fasta sequence

                              [TTGCCCCAGGGTATTCGAGTGCTACAATCCCATCACGACCAGTGGAAGGTGTGCCGGATCTACCGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAACCCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAACATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGGATTGAATAGCAAACATTCGCGTGTGTGCTACCCGCGCAAAGCCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTCTTCTACTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTAACATTTGATCAACAGTTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAA]

[+] EMBL AL695720             [TTGCCCCAGGGTATTCGAGTGCTACAATCCCATCACGACCAGTGGAAGGTGTGCCGGATCTACCGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAACCCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAACATTCGCCATCGCAAAACCAAAGATGCGCTTATAAAGCGCTGGATTGAATAGCAAACATTCGCGTGTGTGCTACCCGCGCAAAGCCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACGTATTCTTCTACTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTAACATTTGATCAACAGTTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAA]




>consensus_3903#1
TTGCCCCAGGGTATTCGAGTGCTACAATCCCATCACGACCAGTGGAAGGTGTGCCGGATC
TACCGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAAC
AACCCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAACATTCGCCA
TCGCAAAACCAAAGATGCGCTTATAAAGCGCTGGATTGAATAGCAAACATTCGCGTGTGT
GCTACCCGCGCAAAGCCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATACG
TATTCTTCTACTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTAACATTTGATCAACAGTT
TTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3903#0      TGGTTTCGCCGATGACGGTACGCCGGTCCAGCCCAGCCGTAGCAGCGGCCGACGGCCTAC 60
consensus_3903#1      ------------------------------------------------------------
                                                                                  

consensus_3903#0      TGTACGTGGCTGGTGGTGATCAGCCCTGCGAGATCAACTTTTACCGGGCGCAAATTACAA 120
consensus_3903#1      ------------------------------------------------------TTGCCC 6
                                                                            ** *  

consensus_3903#0      TCGCTTCGTTCGAGTGCTACAATCCCATCACGGACTAGTGGAAGGTGTGCCCGGATCTAC 180
consensus_3903#1      CAGGGT-ATTCGAGTGCTACAATCCCATCACG-ACCAGTGGAAGGTGTGCC-GGATCTAC 63
                        *  *  ************************ ** *************** ********

consensus_3903#0      CGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAAC 240
consensus_3903#1      CGACCAGTCGTTCTGAGGCGGGTGCGGTAGTCGTCTAAACAAAAAAGGCACAAAAACAAC 123
                      ************************************************************

consensus_3903#0      CCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAAAATTCGCCATCG 300
consensus_3903#1      CCCCTTTGGGGATTTATCTCTATCCCTCGGTCCAATCGGCGCGCCTAACATTCGCCATCG 183
                      ************************************************ ***********

consensus_3903#0      CAAAACCAAAGATGCGCTTATAAAGCGCTGCGATTGAATAGCAAACCACTCGCGTGTGTG 360
consensus_3903#1      CAAAACCAAAGATGCGCTTATAAAGCGCTG-GATTGAATAGCAAAC-ATTCGCGTGTGTG 241
                      ****************************** *************** * ***********

consensus_3903#0      CTACCCCCGTGCAAACGCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATAC 420
consensus_3903#1      CTACC--CGCGCAAAGCCGCGAAACCGAACCGACCTTTTGCGTTGAAAGTGCCGAAATAC 299
                      *****  ** *****  *******************************************

consensus_3903#0      GTATTTCTTCTTCTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTTACATTTGATCAACAC 480
consensus_3903#1      GTATT-CTTCTACTCGTTTGTTTGATCGTTGTTTCTTTCCAAGTAACATTTGATCAACAG 358
                      ***** ***** ******************************** ************** 

consensus_3903#0      TTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAAATGTTTTAAACATAT 540
consensus_3903#1      TTTTTCGATCACTTACCAACAAACAAACGATGAGATGATGGTGAA--------------- 403
                      *********************************************               

consensus_3903#0      AGATGTGCAACTAGATATATTATAGTGTGTAGTACCACCACCACCATATTAATCTGCGTA 600
consensus_3903#1      ------------------------------------------------------------
                                                                                  

consensus_3903#0      CACGATCCCCAGCCCGATCCTTTT 624
consensus_3903#1      ------------------------