These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 844 fasta sequence [CCGATCGAATTTATATATGTTTGATGGTTCTCGTAGCCGAGCGAGAAGCAGCGACGAACACATACTAGAGACGGGCAGTCCAGTGCAGCCAAAGCGAAGCCAATCCACCAGCCATTACTGTTTGTTAATATATGTGTATATGAAATCATAAATATTGAAATATGAATGTTTAGTGACCGGAAATCCAAACCAAACCAACTTAAAA-------AAAAACAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATTGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATAC--AGAGAGAGAGAAAGAGAAATGCTTTTTTCCATCTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAATAATAGCTTCATTGGACAGTTTTTCCAAAAGAAATGCAACCCCTTTTCCCTCGCGTTTCCCTTTTATCCTAGTCGTAGAAATGTCCCCGCGTTGCTCTTAGCAGGTTTGTCTCCTACCCATCCGCTCCGTCAATCACCCAACCATCTTAGGCGCACTTCTCTCGTTGGTAGGTTAGTTTGCAACACTGTACACAATTGTGGCTTTTAGGGAGGCTTTCACCGGCAGACACAGGCAGGCTTTGGGCAGGGCTTTAAGGAACAGGAAAAACTCGGTATCGAATGTCGGTTCTGTATCGGACCGAGTCGATCGAGTTTTTCACGATACTATTACCGGCACTCTCGCTGTGACTATTCCTGGACGTTCGAATCGCGTTGCTGTTTTTCCACCGAATTATCTTGTAGCTGTACTTTTCTCGCGTTACAACGTTTCTCGCTAGCTCG] [+] EMBL BM619981 [CCGATCGAATTTATATATGTTTGATGGTTCTCGTAGCCGAGCGAGAAGCAGCGACGAACACATACTAGAGACGGGCAGTCCAGTGCAGCCAAAGCGAAGCCAATCCACCAGCCATTACTGTTTGTTAATATATGTGTATATGAAATCATAAATATTGAAATATGAATGTTTAGTGACCGGAAATCCAAACCAAACCAACTTAAAA AAAAACAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATTGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATAC AGAGAGAGAGAAAGAGAAATGCTTTTTTCCATCTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAATAATAGCTTCATTGGACAGTTTTTCCAAAAGAAATGCAACCCCTTTTCCCTCGCGTTTCCCTTTTATCCTAGTCGTAGAAATGTCCCCGCGTTGCTCTTAGCAGGTTTGTCTCCTACCCATCCGCTCCGTCAATCACCCAACCATCTTAGGCGCACTTCTCTCGTTGGTAGGTTAGTTTGCAACACTGTACACAATTGTGGCTTTTAGGGAGGCTTTCACCGGCAGACACAGGCAGGCTTTGGGCAGGGCTTTAAGGAACAGGAAAAACTCGGTATCGAATGTCGGTT ] [+] EMBL BM631749 [ ccgACCAAACCAACTTAAAAAAAAAACAAAAACAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATTGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATACAGAGAGAGAGAGAAAGAGAAATGCTTTTTTCCATCTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAATAATAGCTTCATTGGACAGTTTTTCCAAAAGAAATGCAACCCCTTTTCCCTCGCGTTTCCCTTTTATCCTAGTCGTAGAAATGTCCCCGCGTTGCTCTTAGCAGGTTTGTCTCCTACCCATCCGCTCCGTCAATCACCCAACCATCTTAGGCGCACTTCTCTCGTTGGTAGGTTAGTTTGCAACACTGTACACAATTGTGGCTTTTAGGGAGGCTTTCACCGGCAGACACAGGCAGGCTTTGGGCAGGGCTTTAAGGAACAGGAAAAACTCGGTATCGAATGTCGGTTCTGTATCGGACCGAGTCGATCGAGTTTTTCACGATACTATTACCGGCACTCTCGCTGTGACTATTCCTGGACGTTCGAATCGCGTTGCTGTTTTTCCACCGAATTATCTTGTAGCTGTACTTTTCTCGCGTTACAACGTTTCTCGCTAGCTCG] consensusID : consensus_3913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [GCAGATTGCCCAGGTTTATCAAACAAACAACTTACAAAAAAANACAAAAATAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATATGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATACAGAGAGAGAGAAAGAGAAATGCTTTATTTCCATCTACTACTACTACTACTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAACTAATAGCTTCATTTGGACAGCTTTTTCCAAAAGCAAATGCAACCCCTATTATACCCTACGCGCTTTCCCTATATNATACCTAGTACGGTAGGAAATGTCCCCGCCGTATGCTCTTAGCCAGGCTANNAGTACTCCTACCCATCCGCTCCGTCACATCACCCACACCATCCTCTAGGNGCGCACTTCNTCCTCGTTGGCTAAGGCTAAAGCTATANGCAACACTGGTACCAACCNNACTCTGCTGCGGCCTCTCNCCACGCGGGCACAGCGCTNTNCTCAACCCGGGCCGAGTACCCACCGATGGGCCCTGCTGCTCTTCTCTGGGGCGCNCNGCGGCCCTTNNTCTCCACGGGGACTCACTCTACGTGCCGCNCACACCCNTCCGCGNNNACTCCCGCGCCACGTTGGTTCCGGGCTCNCCNTCGGTNNNCTTCCGGGGCACCCCCGGNGCGCTTNCGGTANTTCGGCNGGGTTCTCCCTNCCNCGCCNNGNACTGAGTCGTTACTTTCACCCGGGCTCACC] [+] EMBL AL695809 [GCAGATTGCCCAGGTTTATCAAACAAACAACTTACAAAAAAANACAAAAATAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATATGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATACAGAGAGAGAGAAAGAGAAATGCTTTATTTCCATCTACTACTACTACTACTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAACTAATAGCTTCATTTGGACAGCTTTTTCCAAAAGCAAATGCAACCCCTATTATACCCTACGCGCTTTCCCTATATNATACCTAGTACGGTAGGAAATGTCCCCGCCGTATGCTCTTAGCCAGGCTANNAGTACTCCTACCCATCCGCTCCGTCACATCACCCACACCATCCTCTAGGNGCGCACTTCNTCCTCGTTGGCTAAGGCTAAAGCTATANGCAACACTGGTACCAACCNNACTCTGCTGCGGCCTCTCNCCACGCGGGCACAGCGCTNTNCTCAACCCGGGCCGAGTACCCACCGATGGGCCCTGCTGCTCTTCTCTGGGGCGCNCNGCGGCCCTTNNTCTCCACGGGGACTCACTCTACGTGCCGCNCACACCCNTCCGCGNNNACTCCCGCGCCACGTTGGTTCCGGGCTCNCCNTCGGTNNNCTTCCGGGGCACCCCCGGNGCGCTTNCGGTANTTCGGCNGGGTTCTCCCTNCCNCGCCNNGNACTGAGTCGTTACTTTCACCCGGGCTCACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3913#0 CCGATCGAATTTATATATGTTTGATGGTTCTCGTAGCCGAGCGAGAAGCAGCGACGAACA 60 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 CATACTAGAGACGGGCAGTCCAGTGCAGCCAAAGCGAAGCCAATCCACCAGCCATTACTG 120 consensus_3913#1 ------------------------------------------------------------ consensus_3913#0 TTTGTTAATATATGTGTATATGAAATCATAAATATTGAAATATGAATGTTTAGTGACCGG 180 consensus_3913#1 ----------------------------------GCAGATTGCCCAGGTTTATCAAACAA 26 * * * ***** * * consensus_3913#0 AAATCCAAACCAAACCAACTTAAAAAAAAACAAAACCAGAGAAATTCCTAGTAAATCCTA 240 consensus_3913#1 ACAACTTA--CAAAAAAAN----ACAAAAATAAAACCAGAGAAATTCCTAGTAAATCCTA 80 * * * * **** ** * ***** ***************************** consensus_3913#0 CCTCGAT-TGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAG 299 consensus_3913#1 CCTCGATATGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAG 140 ******* **************************************************** consensus_3913#0 AAACTAAGGTAGAGGGAGATACAGAGAGAGAGAAAGAGAAATGCTTT-TTTCCATCTACT 358 consensus_3913#1 AAACTAAGGTAGAGGGAGATACAGAGAGAGAGAAAGAGAAATGCTTTATTTCCATCTACT 200 *********************************************** ************ consensus_3913#0 ACTACTACTACTACTACTACT---------------TCAACTACTACTTCTCTCATTCAA 403 consensus_3913#1 ACTACTACTACTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAA 260 ********************* ************************ consensus_3913#0 -TAATAGCTTCATT-GGACAG-TTTTTCCAAAAG-AAATGCAACCCCTTTT----CCCTC 455 consensus_3913#1 CTAATAGCTTCATTTGGACAGCTTTTTCCAAAAGCAAATGCAACCCCTATTATACCCTAC 320 ************* ****** ************ ************* ** ** * consensus_3913#0 GCGTTTCCCTTTTATC----CTAGTC--GTAG-AAATGTCCCCGC-GT-TGCTCTTAGC- 505 consensus_3913#1 GCGCTTTCCCTATATNATACCTAGTACGGTAGGAAATGTCCCCGCCGTATGCTCTTAGCC 380 *** ** ** * *** ***** **** ************ ** ********** consensus_3913#0 AGGTTTGT----CTCCTACCCATCCGCTCCGTCA-ATCACCCA-ACCATCTT----AGGC 555 consensus_3913#1 AGGCTANNAGTACTCCTACCCATCCGCTCCGTCACATCACCCACACCATCCTCTAGGNGC 440 *** * ********************** ******** ****** * ** consensus_3913#0 GCACTTCT--CTCGTTGGT--AGGTTAG-----TTTGCAACACTGTACACAATTGTGGCT 606 consensus_3913#1 GCACTTCNTCCTCGTTGGCTAAGGCTAAAGCTATANGCAACACTG-GTACCAACCNNACT 499 ******* ******** *** ** * ********* ** * ** consensus_3913#0 TTTAGGGAGGCTTTCACCG-GCAGACACAG-GCAGGCTTTGGGCAGGGCTTTA-AGGAAC 663 consensus_3913#1 CTGCTGCGGCCTCTCNCCACGCGGGCACAGCGCTNTNCTCAACCCGGGCCGAGTACCCAC 559 * * * ** ** ** ** * ***** ** * * **** * ** consensus_3913#0 AGGAAAAACTCGGTA-TCGAATGTCGGTTCTGTATCGGACCGAGTCGATCG-AGTTTTTC 721 consensus_3913#1 CGATGGGCCCTGCTGCTCTTCTCTGGGGCGCNCNGCGGCCCTTNNTCTCCACGGGGACTC 619 * * * * ** * * ** *** ** * * ** consensus_3913#0 ACGATAC-TATTACCGGCACTCTCGCTGTGACTATTCCTGGAC-------GTTCGAATCG 773 consensus_3913#1 ACTCTACGTGCCGCNCACACCCNT-CCGCGNNNACTCCCGCGCCACGTTGGTTCCGGGCT 678 ** *** * * *** * * * * * *** * * **** * consensus_3913#0 CGTTGCTGTTTTTCCACCGAATTATCTTGTAGCTGTACTTTTCTCGCGTTACAACGTTTC 833 consensus_3913#1 CNCCNTCGGTNNNCTTCCGGGGCACCCCC--GGNGCGCTTNCGGTANTTCGGCNGGGTTC 736 * * * * *** * * * * *** * * *** consensus_3913#0 TCGCTAGCTCG------------------------------------ 844 consensus_3913#1 TCCCTNCCNCGCCNNGNACTGAGTCGTTACTTTCACCCGGGCTCACC 783 ** ** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||