These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 854 fasta sequence [AGGCCAAGAACTTCGGCACGTAGGAGCAAGTGAAAACACGGACGACACCGGACCGGAGAGTAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCAT-CCAGCTACATCACGAAGAACATGGCT-CATACGCGCTGTGCCGGGATTGTGTCGA-AAAATTAAAACAAT-CCGTCGCCTTTCGAGACAACTGCCTAG-CCAATAGTGCGCTA-TTCGAGCAGCTGTACAGTAGTAGCNNTTCATATTACGGGCAGGAGGAAGAACCTCCCGAGAAACACTGGCAAACAGCAAGCATCGAGCGGTANAGGTAGAACCACATTAGAANATTGANAATAGATGTGCGAAAAGCCAACGAAACTTAAACCGAGGCATGNGGCCGGAATGGCAGTACCAGGTGTCGAACGAGTTATTACCACANCGATTCGCACACCTCGGCTGACTGGGCTATATGTACGGGACCNNTATGTNATCGCACCAGCGACCAACATACAAGNTACGGAAGGNCGAACGAGGATAACGATANCTGACGCAAGCCTAACCCTTCACACCCTANTACCTTGGGCACAAAAAACCCAAAATATGGACNACACGCGAGGCCCCGAAACACACATTTGCACAATACGGACACAACAGGCGGACCGACACACCGTTGGGCACTTANGGCCTGCGAAACGGTGAAAACCAGACCCGGGCAGTCNCCCCCCGGAGGGCCAACCAAGAACNACCCCGGGGCCAANAGNNCANGGTCGTTGCCCAGNACGNTTGNTCGGCAAAAGGCGC] [+] EMBL BX468550 [AGGCCAAGAACTTCGGCACGTAGGAGCAAGTGAAAACACGGACGACACCGGACCGGAGAGTAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCAT CCAGCTACATCACGAAGAACATGGCT CATACGCGCTGTGCCGGGATTGTGTCGA AAAATTAAAACAAT CCGTCGCCTTTCGAGACAACTGCCTAG CCAATAGTGCGCTA TTCGA ] [+] EMBL AL695941 [ caggattatCCATTTGTCGGTTTTGTCTGTGCGATAAGGAAATCCG CTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATACCAGCTACA CACGAAGAACATGGCTACATACGCGCTGTGCCGGGATTGTGCCGANACAATTAAAACAATACCGTCG CTTTCGAGACAACTGGCTAGACCAATAGTGCGCTATTTCGAGCAGCTGTACAGTAGTAGCNNTTCATATTACGGGCAGGAGGAAGAACCTCCCGAGAAACACTGGCAAACAGCAAGCATCGAGCGGTANAGGTAGAACCACATTAGAANATTGANAATAGATGTGCGAAAAGCCAACGAAACTTAAACCGAGGCATGNGGCCGGAATGGCAGTACCAGGTGTCGAACGAGTTATTACCACANCGATTCGCACACCTCGGCTGACTGGGCTATATGTACGGGACCNNTATGTNATCGCACCAGCGACCAACATACAAGNTACGGAAGGNCGAACGAGGATAACGATANCTGACGCAAGCCTAACCCTTCACACCCTANTACCTTGGGCACAAAAAACCCAAAATATGGACNACACGCGAGGCCCCGAAACACACATTTGCACAATACGGACACAACAGGCGGACCGACACACCGTTGGGCACTTANGGCCTGCGAAACGGTGAAAACCAGACCCGGGCAGTCNCCCCCCGGAGGGCCAACCAAGAACNACCCCGGGGCCAANAGNNCANGGTCGTTGCCCAGNACGNTTGNTCGGCAAAAGGCGC] consensusID : consensus_3918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGCCGGACCGGAGAGTAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATCCAGCTACACCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATTGTGCCGAAAAATTAAAACAATCCGTCGTCTTTCGAGACAACTGCCTAGCCAATAGTGCGCTTTTCGAGCAGCTGTACAGTAGTAGCATTATATACGGGCAGGAGGAAGAACCTCCCGACGAAACACTGCCAATAGCAGCATCGAGCGCAAAGGTAGAACAATTAGAAATTGAAATAGTGTGTGATAAGCAAACGAAATTAACCGAGGATGGGCCGGAATGGCAGTACAGTGTCGAAGAGTTTTCACACGATTCACCCCACTCGGCTGATGGCTATTGTTCGGAAAATTATATCGCACAGCACGAAATTAAGCCGGAGGCCGAACGAAATAGCGATACTGACGCAAGCCTAACCCTTCCACCTAGTACTGGCAAACCATTGAAACGGCCGAAATTGAAACGAAAAGCGACGGAACGTGGATGGCGGAAGCAACGCCGCTCCCGCGCACAGAAACCGGCCAAAGCAGCTCTGGCCCGACGTGTGGCAAGCTGGTAAACAATCT] [+] EMBL BM655200 [CCGCCGGACCGGAGAGTAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAATCGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATCCAGCTACACCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATTGTGCCGAAAAATTAAAACAATCCGTCGTCTTTCGAGACAACTGCCTAGCCAATAGTGCGCTTTTCGAGCAGCTGTACAGTAGTAGCATTATATACGGGCAGGAGGAAGAACCTCCCGACGAAACACTGCCAATAGCAGCATCGAGCGCAAAGGTAGAACAATTAGAAATTGAAATAGTGTGTGATAAGCAAACGAAATTAACCGAGGATGGGCCGGAATGGCAGTACAGTGTCGAAGAGTTTTCACACGATTCACCCCACTCGGCTGATGGCTATTGTTCGGAAAATTATATCGCACAGCACGAAATTAAGCCGGAGGCCGAACGAAATAGCGATACTGACGCAAGCCTAACCCTTCCACCTAGTACTGGCAAACCATTGAAACGGCCGAAATTGAAACGAAAAGCGACGGAACGTGGATGGCGGAAGCAACGCCGCTCCCGCGCACAGAAACCGGCCAAAGCAGCTCTGGCCCGACGTGTGGCAAGCTGGTAAACAATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3918#0 AGGCCAAGAACTTCGGCACGTAGGAGCAAGTGAAAACACGGACGACACCGGACCGGAGAG 60 consensus_3918#1 --------------------------------------------CCGCCGGACCGGAGAG 16 * ************* consensus_3918#0 TAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAAT 120 consensus_3918#1 TAAAATGTTTCCCATTTGTCGGTTTTGTCTGTGCGATAATGAAACCCGCCTCGATCTAAT 76 ************************************************************ consensus_3918#0 CGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATCCA 180 consensus_3918#1 CGCAACCTCACTGGACGGATCTCTTACGATAGAAAGTGTGGAACGCTTTACAGGCATCCA 136 ************************************************************ consensus_3918#0 GCTACATCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATTGTGTCGAAAAATTAAA 240 consensus_3918#1 GCTACACCACGAAGAACATGGCTCATACGCGCTGTGCCGGGATTGTGCCGAAAAATTAAA 196 ****** **************************************** ************ consensus_3918#0 ACAATCCGTCGCCTTTCGAGACAACTGCCTAGCCAATAGTGCGCTATTCGAGCAGCTGTA 300 consensus_3918#1 ACAATCCGTCGTCTTTCGAGACAACTGCCTAGCCAATAGTGCGCTTTTCGAGCAGCTGTA 256 *********** ********************************* ************** consensus_3918#0 CAGTAGTAGCNNTTCATATTACGGGCAGGAGGAAGAACCTCCCGA-GAAACACTGGCAAA 359 consensus_3918#1 CAGTAGTAGCATTATAT---ACGGGCAGGAGGAAGAACCTCCCGACGAAACACTG-CCAA 312 ********** * ** ************************* ********* * ** consensus_3918#0 CAGCAAGCATCGAGCGGTANAGGTAGAACCACATTAGAANATTGANAATAGATGTGCGAA 419 consensus_3918#1 TAGCA-GCATCGAGCG-CAAAGGTAGAACA--ATTAGAAATT--GAAATAG-TGTGTGAT 365 **** ********** * ********* ******* * ***** **** ** consensus_3918#0 AAGCCAACGAAACTTAAACCGAGGCATGNGGCCGGAATGGCAGTACCAGGTGTCGAACGA 479 consensus_3918#1 AAGCAAACGAAATT--AACCGAGG-ATGGG-CCGGAATGGCAGTAC--AGTGTCGAA-GA 418 **** ******* * ******** *** * *************** ******** ** consensus_3918#0 GTTATTACCACANCGATTCGCACACCTCGGCTGACTGGGCTATATGTACGGGACCNNTAT 539 consensus_3918#1 GTTTTCAC----ACGATTCACCCCACTCGGCTGAT--GGCTAT-TGTTCGG----AAAAT 467 *** * ** ****** * * ********* ****** *** *** ** consensus_3918#0 GTNATCGCACCAGCGACCAACATACAAGNTACGGAAGGNCGAACGAGGATAACGATANCT 599 consensus_3918#1 TATATCGCAC-AGCA--CGAAAT-TAAGCC---GGAGGCCGAACGAA-ATAGCGATAC-T 518 ******* *** * * ** *** * *** ******* *** ***** * consensus_3918#0 GACGCAAGCCTAACCCTTC-ACACCCTANTACCTTGGGCACAAAAAACCCAAAATATGGA 658 consensus_3918#1 GACGCAAGCCTAACCCTTCCACCTAGTACTGGCAAACCATTGAAACGGCCGAAATTGAAA 578 ******************* ** ** * * *** ** **** * consensus_3918#0 CNACACGCGAGGCCCCGAAACACACATTTGCACAATACGGACACAACAGGCGGACCGACA 718 consensus_3918#1 CGAAAAGCGA-----CGGAACGTGGATGGCGGAAGCAACGCCGCTCCCG-CGCACAGAAA 632 * * * **** ** *** ** * * * * * * * ** ** ** * consensus_3918#0 CACCGTTGGGCACTTANGGCCTGCGAAACGGTGAAAACCAGACCCGGGCAGTCNCCCCCC 778 consensus_3918#1 CCGGCCAAAGCAGCTCTGGCC--CGACGTGTGGCAAGCTGG---TAAACAATCT------ 681 * *** * **** *** * * ** * * ** ** consensus_3918#0 GGAGGGCCAACCAAGAACNACCCCGGGGCCAANAGNNCANGGTCGTTGCCCAGNACGNTT 838 consensus_3918#1 ------------------------------------------------------------ consensus_3918#0 GNTCGGCAAAAGGCGC 854 consensus_3918#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||