These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CCGCGGACGCGTGGGTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCGTGTGTTTCCAAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGACTGTATGCACTTTGGCTGTGACGGAATGGTGCAGCCCCGTAGCATTCTTTCGCACGAGACGTGAGCAACCGCAATCCCTTCATCACAAACACCGTTCGTCCGTCGCTTGCTGTGCATGGGAACGCAGTCGGAGTCTCTTGTGTGTATGTGTATGTGTGTTTGTGCCAAGGAGAAGGTGTGTAGGGGAGTGTAGCGTTGCTGTCGTCGTTGTGAATGAGCAGTGTGTGCATTGACTGTGTAGAAAGTGGCCGTAGAAAACTGAAGAGCCCATTTCGAGGGAATTGAAAACAACGGGCTTTTCAACGGGCCTTGTGCCGGAAGCCAAAACTGCCACCGGCGCGCGTTTGTGTATATGTGTATGTGTGTGTGCGTTTGTGCGTCCGGTTCCATCCGTGTTTTCTGTGGTGATCGCGTCCGACAGTGATCCCC] [+] EMBL BM615007 [CCGCGGACGCGTGGGTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCGTGTGTTTCCAAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGACTGTATGCACTTTGGCTGTGACGGAATGGTGCAGCCCCGTAGCATTCTTTCGCACGAGACGTGAGCAACCGCAATCCCTTCATCACAAACACCGTTCGTCCGTCGCTTGCTGTGCATGGGAACGCAGTCGGAGTCTCTTGTGTGTATGTGTATGTGTGTTTGTGCCAAGGAGAAGGTGTGTAGGGGAGTGTAGCGTTGCTGTCGTCGTTGTGAATGAGCAGTGTGTGCATTGACTGTGTAGAAAGTGGCCGTAGAAAACTGAAGAGCCCATTTCGAGGGAATTGAAAACAACGGGCTTTTCAACGGGCCTTGTGCCGGAAGCCAAAACTGCCACCGGCGCGCGTTTGTGTATATGTGTATGTGTGTGTGCGTTTGTGCGTCCGGTTCCATCCGTGTTTTCTGTGGTGATCGCGTCCGACAGTGATCCCC] consensusID : consensus_3924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 600 fasta sequence [ATTTATTTTCCTCCCGTGAAACGCGCTCCTTTTTCCGTTTCCAGTTTCCTGTTTTGTTCGCCCCTCTCTCCTGCTGTGTGTCCTCGTATGCGTTCCCGCCCCTGTACGGCTGTCCCTTGTGCGGTGCGCCGCCCTTCATTTCCGCGCCCTTAGCCAAGCTAATCTCCAAGTTGCGAAGACGAACCCATCCGCCCGTCGGTGTTGTGCGCTGGTGTGTTCGTCCCGTTTTCATTCATTCAGTCCGTTGCGAGCATTCCTCCGTTCTCCGTCTGACCGTTGGTTCGTGTCGTGTTCTCTCGAGTGGAACCGTGTGTGTCACCACATACTCACACACACACGCAGACGTGCGCGCGTTCGCACACAGACCACTACCACCACCACCATCAGCCTGTGGGCTCGCCGAGGGTCTAGTAGTCTGTTTTTGTGTGTTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCTTGTGTTTCCAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGACTGTATGC] [+] EMBL BM600268 [ATTTATTTTCCTCCCGTGAAACGCGCTCCTTTTTCCGTTTCCAGTTTCCTGTTTTGTTCGCCCCTCTCTCCTGCTGTGTGTCCTCGTATGCGTTCCCGCCCCTGTACGGCTGTCCCTTGTGCGGTGCGCCGCCCTTCATTTCCGCGCCCTTAGCCAAGCTAATCTCCAAGTTGCGAAGACGAACCCATCCGCCCGTCGGTGTTGTGCGCTGGTGTGTTCGTCCCGTTTTCATTCATTCAGTCCGTTGCGAGCATTCCTCCGTTCTCCGTCTGACCGTTGGTTCGTGTCGTGTTCTCTCGAGTGGAACCGTGTGTGTCACCACATACTCA ] [+] EMBL BX617303 [ GTTTCCTGTTTTGTTCGCCCCTCTCTCCTGCTGTGTGTCCTCGTATGCGTTCCCGCCCCTGTACGGCTGTCCCTTGTGCGGTGCGCCGCCCTTCATTTCCGCGCCCTTAGCCAAGCTAATCTCCAAGTTGCGAAGACGAACCCATCCGCCCGTCGGTGTTGTGCGCTGGTGTGTTCGTCCCGTTTTCATTCATTCAGTCCGTTGCGAGCATTCCTCCGTTCTCCGTCTGACCGTTGGTTCGTGTCGTGTTCTCTCGAGTGGAACCGTGTGTGTCACCACATACTCACACACACACGCAGACGTGCGCGCGTTCGCACACAGACCACTACCACCACCACCATCAGCCTGTGGGCTCGCCGAGGGTCTAGTAGTCTGTTTTTGTGTGTTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAGAGGCGAAGAGAACAGTGTGTGTGCTTGTGTTTCCAATCCAAATCAATTGCAGCTGCTTGGAATTGGCCTGCAATTGCTGCACCGACTGTATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3924#0 CCGCGGACGCGTGGGTTCGAACGTCGAACGCAACCGTCCTCCAGTGCTGGTTCGGGCGGT 60 consensus_3924#1 ------ATTTATTT-TCCTCCCGTGAAACGCGCTCCTTTTTCCGTTTCCAGTTTCCTGTT 53 * * * * *** ***** * * * * ** * * * consensus_3924#0 ACGGGCCACCGTTTCGTTTGCGGTCTCGCAAAG-AGGCGAAGAGAACAGTGTGTGTGCGT 119 consensus_3924#1 TTGTTCGCCCCTCTCTCCTGCTGTGTGTCCTCGTATGCGTTCCCGCCCCTGTACGGCTGT 113 * * ** * ** *** ** * * * * *** * *** * ** consensus_3924#0 GTGTTTCCAAATCCAAA-----TCAATTGCAGCTGCTTGG---AATTGGCCTGCAA-TTG 170 consensus_3924#1 CCCTTGTGCGGTGCGCCGCCCTTCATTTCCGCGCCCTTAGCCAAGCTAATCTCCAAGTTG 173 ** * * *** ** * *** * * * ** *** *** consensus_3924#0 CTGCACCGACTGTATGCACTT-TGGCTGTGACGGAATGGTGCAGCCCCGTAGCATTCTTT 229 consensus_3924#1 CGAAGACGAACCCATCCGCCCGTCGGTGTTGTGCGCTGGTGTGTTCGTCCCGTTTTCATT 233 * *** ** * * * * *** * ***** * * *** ** consensus_3924#0 CGCACGAGACGTGAGCAACCGCAATCCCTTCATCACAAACACCGTTCGTCCGTCGCTTGC 289 consensus_3924#1 CATTCAGTCCGTTGCGAGC----ATTCCTCCGTT-----CTCCGTCTGACCGTTGGTTCG 284 * * *** * * ** *** * * * **** * **** * ** consensus_3924#0 TGTGCATGGGAACGCAGTCGGAGTCTCTTGTGTGTATGTGTATGTGTGTTTGTGCCAAGG 349 consensus_3924#1 TGT-CGTGTTCTCTCGAGTGGAACCGTGTGTGTCACCACATACTCACACACACACGCAGA 343 *** * ** * * *** * ***** ** * ** consensus_3924#0 AGAAGGTGTGTAGGGGAGTGTAGCGTTGCTGTCGTCGTTGTGAATGAGCAGTGTGTGCAT 409 consensus_3924#1 CGTGCGCGCGTTCGCACACAGACCACTACCACCACCACCATCAGC---CTGTGGGCTCGC 400 * * * ** * * * * * * * * * * *** * * consensus_3924#0 TGACTGTGTAGAAAGTGGCCGTAGAAAACTGAAGAGCCCATTTCGAGGGAATTGAAAACA 469 consensus_3924#1 CGAGGGTCTAGTAGTCTGTTTTTGTG------------TGTTTCGAACG--TCGAACGCA 446 ** ** *** * * * * ****** * * *** ** consensus_3924#0 ACGGGCTTTTCAACGGGCCTTGTGCCGGAAGCCAAAACTGCCACCGGCGCGCGTTTGTGT 529 consensus_3924#1 ACCGTCCTC-CAGTGCTGGTTCGGGCGGTACGGGCCACCGTTTCGTTTGCGGTCTCGCAA 505 ** * * * ** * ** * *** * ** * * *** * * consensus_3924#0 ATATGTGTATGT----GTGTGTGCGTTTGTGCGTCCGGTTCCA-TCCGTGTTTTCTGTGG 584 consensus_3924#1 AGAGGCGAAGAGAACAGTGTGTGTGCTTGTGTTTCCAATCCAAATCAATTGCAGCTGCTT 565 * * * * * ******* * ***** *** * * * ** * *** consensus_3924#0 TGATCGCGTCCGACAGTGATCCCC----------- 608 consensus_3924#1 GGAATTGGCCTGCAATTGCTGCACCGACTGTATGC 600 ** * * * * ** * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||