These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGCCCACGCGTCCGGTGGACAGTGTGTATTTTTGCGTAGCTAGAGCGACTCGATGCTGCTAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGGAAGGAATGATTTTGTGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTCGTGTTGCTACTGTTGTGCCTCGTGCTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGCTGTGTGCTGATACCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATGATCGTTGGCATAGCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATGCTTGCGATACTGGCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTTGTGCAGTAATAGGAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGTGCGGTGCGGCAGATGCCACCTCGGAGATTAGAATTGCGGAGATCGATTAGCTGAAGCAGCAGCGGTAGTAGC] [+] EMBL BM598028 [CCGCCCACGCGTCCGGTGGACAGTGTGTATTTTTGCGTAGCTAGAGCGACTCGATGCTGCTAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGGAAGGAATGATTTTGTGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTCGTGTTGCTACTGTTGTGCCTCGTGCTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGCTGTGTGCTGATACCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATGATCGTTGGCATAGCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATGCTTGCGATACTGGCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTTGTGCAGTAATAGGAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGTGCGGTGCGGCAGATGCCACCTCGGAGATTAGAATTGCGGAGATCGATTAGCTGAAGCAGCAGCGGTAGTAGC] consensusID : consensus_3926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCCGAGGTTTACTAGAGCGACTCGATGCTGCTAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGTGAAGGAATGATTTTGCGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTCGTGTTGCTACTGTTGTGCCTCGTGCTACAACACACCGATTTTGCTGTGTATGGAAGTCTNGTGCTAGTGTTGCTTGATACCGGTGCTCGGGCTGCTGGTGATTCTTGTTCGGCGCAGNTGTTTGGCATGGATCGTTGGCATAGGCCTGGCTGGCACAGAACCACACCGAACCGGCGACCGTCAAACCGTATTGCTTGCGATACTGGCAAAACAGTTCCGGCGGGGAGTCTTTCAGCCGGAGCTGAACAACAGTGTTGTGCACGTAGGAGCTTGGGACGGTTGGANGGGCAGTATGTAAATTCAAATCCCATTTAATTCAAAGANCTTGGGCATTGGGTTCTCCGNGATTGGGTTCCAAACGGGTCNACAAATTGGCGGTTGCCGGANTGCTCGGGGCACGGATTGACCCACNCCCCTCTCGTGCAGGCANATTTCANGAATTNTGCCGGGAGGCATTCCGCGATCTAGCTTCGCAAACGGCCCAGCCAGAGNGGCGGCTAGGTTAAAGNACAAGGGANCCTATCCAACGCATA] [+] EMBL AL696173 [CCCGAGGTTTACTAGAGCGACTCGATGCTGCTAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGTGAAGGAATGATTTTGCGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTCGTGTTGCTACTGTTGTGCCTCGTGCTACAACACACCGATTTTGCTGTGTATGGAAGTCTNGTGCTAGTGTTGCTTGATACCGGTGCTCGGGCTGCTGGTGATTCTTGTTCGGCGCAGNTGTTTGGCATGGATCGTTGGCATAGGCCTGGCTGGCACAGAACCACACCGAACCGGCGACCGTCAAACCGTATTGCTTGCGATACTGGCAAAACAGTTCCGGCGGGGAGTCTTTCAGCCGGAGCTGAACAACAGTGTTGTGCACGTAGGAGCTTGGGACGGTTGGANGGGCAGTATGTAAATTCAAATCCCATTTAATTCAAAGANCTTGGGCATTGGGTTCTCCGNGATTGGGTTCCAAACGGGTCNACAAATTGGCGGTTGCCGGANTGCTCGGGGCACGGATTGACCCACNCCCCTCTCGTGCAGGCANATTTCANGAATTNTGCCGGGAGGCATTCCGCGATCTAGCTTCGCAAACGGCCCAGCCAGAGNGGCGGCTAGGTTAAAGNACAAGGGANCCTATCCAACGCATA] consensusID : consensus_3926#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [ATGCCCGAGGTTTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGCTGTGTGCTGATACCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATGATCGTTGGCATAGCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATGCTTGCGATACTGGCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTTGTGCAGTAATAGGAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGTGCGGTGCGGCAGATGC] [+] EMBL AL934766 [ATGCCCGAGGTTTACAACACACCGATCTGCTGTGTTGGAAGTCTGTGCTGTGTGCTGATACCGCTGCTCGGGCTGCTGGTGATTCTGTTCGGCGCAGTGTTTGGCATGATCGTTGGCATAGCCTGGCTGACACAGAACCACACCGAACCAGCGACCGTCAACCGTATGCTTGCGATACTGGCAAACAGTTCCGCCGGGGAGTCTTTCACCGCGAGCGAACAAAGTGTTGTGCAGTAATAGGAGCTGGACGGTGGAGGAGTTGTTATCAATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAAAAAAACATCTTTAGAGCAACTTTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCCCGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGTGCGGTGCGGCAGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3926#0 CCGCCCACGCGTCCGGTGGACAGTGTGTATTTTTGCGTAGCTAGAGCGACTCGATGCTGC 60 consensus_3926#2 ------------------------------------------------------------ consensus_3926#1 -----------------------------CCCGAGGTTTACTAGAGCGACTCGATGCTGC 31 consensus_3926#0 TAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATG-GAAGGAATGA 119 consensus_3926#2 ------------------------------------------------------------ consensus_3926#1 TAGTGAACGAGTGAGAGTTTTAGGCGATTCTTTTTTAGGGCCGCGGATGTGAAGGAATGA 91 consensus_3926#0 TTTTGTGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTC 179 consensus_3926#2 ------------------------------------------------------------ consensus_3926#1 TTTTGCGGGTAGAATCGAACCGAGCAGCACCGGCAGTCCGATGGGAGAGTGCGTCAAGTC 151 consensus_3926#0 GTGTTGCTACTGTTGTGCCTCGTGCT-ACAACACACCGATCT-GCTGTGT-TGGAAGTCT 236 consensus_3926#2 --------------ATGCCCGAGGTTTACAACACACCGATCT-GCTGTGT-TGGAAGTCT 44 consensus_3926#1 GTGTTGCTACTGTTGTGCCTCGTGCT-ACAACACACCGATTTTGCTGTGTATGGAAGTCT 210 **** * * ************* * ******* ********* consensus_3926#0 G-TGCT-GTGTG--CTGATACCGCTGCTCGGGCTGCTGGTGATTCT-GTTCGGCGCAGT- 290 consensus_3926#2 G-TGCT-GTGTG--CTGATACCGCTGCTCGGGCTGCTGGTGATTCT-GTTCGGCGCAGT- 98 consensus_3926#1 NGTGCTAGTGTTGCTTGATACCGGTGCTCGGGCTGCTGGTGATTCTTGTTCGGCGCAGNT 270 **** **** ******** ********************** *********** consensus_3926#0 GTTTGGCATG-ATCGTTGGCATAG-CCTGGCTGACACAGAACCACACCGAACCAGCGACC 348 consensus_3926#2 GTTTGGCATG-ATCGTTGGCATAG-CCTGGCTGACACAGAACCACACCGAACCAGCGACC 156 consensus_3926#1 GTTTGGCATGGATCGTTGGCATAGGCCTGGCTGGCACAGAACCACACCGAACCGGCGACC 330 ********** ************* ******** ******************* ****** consensus_3926#0 GTCAA-CCGTAT-GCTTGCGATACTGGCAAA-CAGTTCCGCCGGGGAGTCTTTCACCGCG 405 consensus_3926#2 GTCAA-CCGTAT-GCTTGCGATACTGGCAAA-CAGTTCCGCCGGGGAGTCTTTCACCGCG 213 consensus_3926#1 GTCAAACCGTATTGCTTGCGATACTGGCAAAACAGTTCCGGCGGGGAGTCTTTCAGCCGG 390 ***** ****** ****************** ******** ************** * * consensus_3926#0 AGC-GAACAA-AGTGTTGTGCAGTAATAGGAGCT--GGACGGT-GGAGGAGTTGT-TATC 459 consensus_3926#2 AGC-GAACAA-AGTGTTGTGCAGTAATAGGAGCT--GGACGGT-GGAGGAGTTGT-TATC 267 consensus_3926#1 AGCTGAACAACAGTGTTGTGCA--CGTAGGAGCTTGGGACGGTTGGANGGGCAGTATGTA 448 *** ****** *********** ******** ******* *** * * ** * * consensus_3926#0 AATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAA------ 513 consensus_3926#2 AATCCATTATCAAGCACTTCCGACACAACACGAACAGCGGGTGTCAACACACAA------ 321 consensus_3926#1 AATTCAAATCCCATTTAATTCAA-AGANCTTGGGCATTGGGTTCTCCGNGATTGGGTTCC 507 *** ** * * * * * * * * * ** **** * consensus_3926#0 AAAAACATCTTTAGAGCAACT-TTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCC 572 consensus_3926#2 AAAAACATCTTTAGAGCAACT-TTGTATGCTAGGTCTTTCCCCTACAGCAACAACACCCC 380 consensus_3926#1 AAACGGGTCNACAAATTGGCGGTTGCCGGANTGCTCGGGGCACGGATTGACCCACNCCCC 567 *** ** * * * *** * * ** * * * * ** **** consensus_3926#0 -CGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGT-GCGGTGCGGCAGATGCC 630 consensus_3926#2 -CGGGGACTGGCATGGTTCTCGGATGGTCAAGGAAAATGCGT-GCGGTGCGGCAGATGC- 437 consensus_3926#1 TCTCGTGCAGGCANATTTCANGAATTNTGCCGGGAGGCATTCCGCGATCTAGCTT-CGCA 626 * * * **** *** * ** * ** * *** * ** ** consensus_3926#0 ACCTCGGAGATTAGAATTGCGGAGATCGATTAGCTGAAGCAGCAGCGGTAGTAGC--- 685 consensus_3926#2 ---------------------------------------------------------- consensus_3926#1 AACGGCCCAGCCAGAGNGGCGGCTAGGTTAAAGNACAAGGGANCCTATCCAACGCATA 684 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||