These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 990 fasta sequence [AATACCCGAGGTTAAACTTATGAACACGAAAAACCTGACCATCCCCCTATNAAACATTANTATTATTCGAACTGATGTATNTTCACACAANTGCGTNACATGGTGGTTCACACGGGCATATACAAACATATTGCCTCCTGCACATCTATACAAGCTTTAATTAACCGAACTTTTCCAACACATTACACGATAAGTATGTGTGGAAACGTCCCAACAGAATATGTTGAATATAATTCGCACAATTCTCACTTGGATTTTCCACCCTATGTTCGCAGTGTCAGGTAATAAGGNTCCAGCAGCAAATACTAATTCAATTCAATTTTGGGCGGGTAAACTATGTGATCTTTTCGTTTTAAATTAGATTCACCTAATTCTTGTTNTNGAATGGTATCTAGTTTACTGNATTAAACGTTCTAGTTATTAAATTCGTNTAGTNGCTGTTTAACANATTAAAACATCATAAATTGGGNNAACTGAAAACCCCTAACAGCAAAACCTACAATNTGANATAGATAATCATTTAGGGCCAAATGNACAGAGTGAACAGAAACCTCTCAAAAACGCATCAATCGTNAAGGTGACACAAGTTAGTCCTTTACAATCCAACTGCGGCTCAGCAACAATTTNGGACGTCCCNTCTATAATGATCCCAGCAGCGGGGATTGTGTAACAGCACGAAACAGAAACCAATCCTTAAATNATTACCTCCCTGGCANTGGTGGTCAGAAATCAATGGAGGGGTGTGTTGTATTCCCTCCTNTGTACCTGGTGTCAAGGTCTGCNCACCTATTAATATAAGGAACNGACTATCTGGGTACNATGGGGAACATACGGTGCCCANNGCAGAGGCGCACNNACNCATNGNTGTGAGNTNGAACTNACACTAAATGGTGGTNGGNGGTAACAGTTTANACCACATTGAAACGGATGNCCTGGCACGACGATTGTCTTACCCTTNTATNNNTGGGGAGGCGCANNGCGACCAGAGAG] [+] EMBL AL932722 [AATACCCGAGGTTAAACTTATGAACACGAAAAACCTGACCATCCCCCTATNAAACATTANTATTATTCGAACTGATGTATNTTCACACAANTGCGTNACATGGTGGTTCACACGGGCATATACAAACATATTGCCTCCTGCACATCTATACAAGCTTTAATTAACCGAACTTTTCCAACACATTACACGATAAGTATGTGTGGAAACGTCCCAACAGAATATGTTGAATATAATTCGCACAATTCTCACTTGGATTTTCCACCCTATGTTCGCAGTGTCAGGTAATAAGGNTCCAGCAGCAAATACTAATTCAATTCAATTTTGGGCGGGTAAACTATGTGATCTTTTCGTTTTAAATTAGATTCACCTAATTCTTGTTNTNGAATGGTATCTAGTTTACTGNATTAAACGTTCTAGTTATTAAATTCGTNTAGTNGCTGTTTAACANATTAAAACATCATAAATTGGGNNAACTGAAAACCCCTAACAGCAAAACCTACAATNTGANATAGATAATCATTTAGGGCCAAATGNACAGAGTGAACAGAAACCTCTCAAAAACGCATCAATCGTNAAGGTGACACAAGTTAGTCCTTTACAATCCAACTGCGGCTCAGCAACAATTTNGGACGTCCCNTCTATAATGATCCCAGCAGCGGGGATTGTGTAACAGCACGAAACAGAAACCAATCCTTAAATNATTACCTCCCTGGCANTGGTGGTCAGAAATCAATGGAGGGGTGTGTTGTATTCCCTCCTNTGTACCTGGTGTCAAGGTCTGCNCACCTATTAATATAAGGAACNGACTATCTGGGTACNATGGGGAACATACGGTGCCCANNGCAGAGGCGCACNNACNCATNGNTGTGAGNTNGAACTNACACTAAATGGTGGTNGGNGGTAACAGTTTANACCACATTGAAACGGATGNCCTGGCACGACGATTGTCTTACCCTTNTATNNNTGGGGAGGCGCANNGCGACCAGAGAG] consensusID : consensus_3932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence [CAGAATCGCNGACGGTTAATGCTAAAATGATGTTTAAAGCGGCATATACAAACATATTGCCTCCTGCACATCTATACAAGCTTTATTACCGAACTTTTCCAGCACATTACACGATAAGTATGGTGGAAAGCGTCCAAAAGAATATGTTGAATATAATTCGCACAATTTCACTTGGATTTTCCACCCTATGTTCGCAGTGTCAGGTAATAAGGCTCCAGCAGCAAATACAAATGACATTAATTTGGGCGTGTAAACTATGTGATCTTTTGTTTTAAATTAGATTCACCTAATTTCTGTTTGAATGGTATCTAGTTTAACTGTTTAAACGTTTTAGTTATTAACTTCGTTTTGTTTGTTTAACAATTAAAACATCATAACTTGGAACTGAAACCCCCTAGCAGCAAAACTAAATTTGAACATAGATCAANATTCTTTCTCTAGGCACAATGANAGAGTGAACAGAAACCTCTCAAAACGCATCAATCGTAAGGTGAAACAAGTAGTCTNTTTCACATCAATTGCGCTAGCCAAATTNGCAGTCCATCTTTAATGATCCGGAAGGAGCCGGGATGTGTAACCGAGAAACAGGAAACAACATCTAATTGTACCTCCTGCATGGTGTCACAAGCATGGAGGGGTGTGTGTNATACTATTCTTATCGTACCTCGTGTCAAGTCTTGTGAGCTTATTANATNATAGCGACACAGATCANTTGGTTTATCA] [+] EMBL AL696267 [CAGAATCGCNGACGGTTAATGCTAAAATGATGTTTAAAGCGGCATATACAAACATATTGCCTCCTGCACATCTATACAAGCTTTATTACCGAACTTTTCCAGCACATTACACGATAAGTATGGTGGAAAGCGTCCAAAAGAATATGTTGAATATAATTCGCACAATTTCACTTGGATTTTCCACCCTATGTTCGCAGTGTCAGGTAATAAGGCTCCAGCAGCAAATACAAATGACATTAATTTGGGCGTGTAAACTATGTGATCTTTTGTTTTAAATTAGATTCACCTAATTTCTGTTTGAATGGTATCTAGTTTAACTGTTTAAACGTTTTAGTTATTAACTTCGTTTTGTTTGTTTAACAATTAAAACATCATAACTTGGAACTGAAACCCCCTAGCAGCAAAACTAAATTTGAACATAGATCAANATTCTTTCTCTAGGCACAATGANAGAGTGAACAGAAACCTCTCAAAACGCATCAATCGTAAGGTGAAACAAGTAGTCTNTTTCACATCAATTGCGCTAGCCAAATTNGCAGTCCATCTTTAATGATCCGGAAGGAGCCGGGATGTGTAACCGAGAAACAGGAAACAACATCTAATTGTACCTCCTGCATGGTGTCACAAGCATGGAGGGGTGTGTGTNATACTATTCTTATCGTACCTCGTGTCAAGTCTTGTGAGCTTATTANATNATAGCGACACAGATCANTTGGTTTATCA] consensusID : consensus_3932#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [GAATCGCCGAGGTTAGGTGAAACAAGTAGTCTTTTAAATCATTGCGCTAGCAAAATTTGCAGTCCATCTTTAATGATCCAAGAGCGGATGTGTAACGAGAAACAGAAACAACATCTAATTATACCTCCTGCATGGTGTCAGAAGCATGGAGGGGTGTGTGTTTTCCCTCTTTTTGTTCTTGTGTCAAGTCTTGTGAGCTTATTAATTATAGGAACAGATTATTTGGTTTTATCATTTGCTTATCACTACTGTTTGCTCCAATGCAAAATGCAACATAACACTAATAGTGTGTGTAAGTGTGGCAAAACTTAGCTAGTTTTATGTTTGTTTGTGTACTGCTTAGTATTAAGACTGATTATCAATAAACCAGACAAAACATTTAATACAGAAAAACAAACAAGGAATATCTGCACGTCATCCAAATTGAAGGGGAACTCTAAACTAGGTAATCCAAATGGATAACAAACAGTGTTGATGTGCATTCGATTCAGCTCAAGCGTAAACTCAAACAACAGATCGACATCACCATTCCCGAGTNGATGGTGAAATAACGGTAACAGTGAATTGGTGGGGCTACACCCCAGCATAAGGTCACGCTTCACGAAAAGGCNTTTTTTTCTATTTGCCGACGCTTCCTCGCGGTTAANATGTGCATTTTTAAAGTAAGCCAAAACGGNATTATTTCATCCCATAACACAAATCTCTCGCTGCCG] [+] EMBL AL934734 [GAATCGCCGAGGTTAGGTGAAACAAGTAGTCTTTTAAATCATTGCGCTAGCAAAATTTGCAGTCCATCTTTAATGATCCAAGAGCGGATGTGTAACGAGAAACAGAAACAACATCTAATTATACCTCCTGCATGGTGTCAGAAGCATGGAGGGGTGTGTGTTTTCCCTCTTTTTGTTCTTGTGTCAAGTCTTGTGAGCTTATTAATTATAGGAACAGATTATTTGGTTTTATCATTTGCTTATCACTACTGTTTGCTCCAATGCAAAATGCAACATAACACTAATAGTGTGTGTAAGTGTGGCAAAACTTAGCTAGTTTTATGTTTGTTTGTGTACTGCTTAGTATTAAGACTGATTATCAATAAACCAGACAAAACATTTAATACAGAAAAACAAACAAGGAATATCTGCACGTCATCCAAATTGAAGGGGAACTCTAAACTAGGTAATCCAAATGGATAACAAACAGTGTTGATGTGCATTCGATTCAGCTCAAGCGTAAACTCAAACAACAGATCGACATCACCATTCCCGAGTNGATGGTGAAATAACGGTAACAGTGAATTGGTGGGGCTACACCCCAGCATAAGGTCACGCTTCACGAAAAGGCNTTTTTTTCTATTTGCCGACGCTTCCTCGCGGTTAANATGTGCATTTTTAAAGTAAGCCAAAACGGNATTATTTCATCCCATAACACAAATCTCTCGCTGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3932#0 AATACCCGAGGTTAAACTTATGAACACGAAAAACCTGACCATCCCCCTATNAAACATTAN 60 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 TATTATTCGAACTGATGTATNTTCACACAANTGCGTNACATGGTGGTTCACACGGGCATA 120 consensus_3932#1 ------CAGAATCGCNGACGGTT------AATGC-TAAAATGATG-TTTAAAGCGGCATA 46 consensus_3932#2 --------GAATCGCCGAGGTTA------GGTGAAACAAGTAGTCTTTTAAATCA--TTG 44 *** * * * ** * * * ** * * * consensus_3932#0 TACAAACATATTGCCTCCTGCACATCTATACAAGCTTTAATTAACCGAACTTTTCCAACA 180 consensus_3932#1 TACAAACATATTGCCTCCTGCACATCTATACAAGCTTTATT--ACCGAACTTTTCCAGCA 104 consensus_3932#2 CGCTAGCAAAAT--TTGCAGTCCATCTTTA-ATGATCCAAG--AGCGGA--TGTGTAACG 97 * * ** * * * * * ***** ** * * * * * ** * * * * * consensus_3932#0 CATTACACGATAAGTATGTGTGGAAACGTCCCAACAGAATATGTTGAATATAATTCGCAC 240 consensus_3932#1 CATTACACGATAAGTATG-GTGGAAAGCGTCCAAAAGAATATGTTGAATATAATTCGCAC 163 consensus_3932#2 AGAAACAGAAACAACATCTAATTATACCTCCT------GCATGGTGTCAGAAGCATGGAG 151 *** * * ** * * * *** ** * * * consensus_3932#0 AATTCTCACTTGGATTTTCCACCCTATGTTCGCAGTGTCAGGTAATAAGGNTCCAGCAGC 300 consensus_3932#1 AATT-TCACTTGGATTTTCCACCCTATGTTCGCAGTGTCAGGTAATAAGGCTCCAGCAGC 222 consensus_3932#2 GGGT-----GTGTGTTTTCCCTCTTTTTGTTCTTGTGTCAAGTCTTGTGAGCTTATTAAT 206 * ** ****** * * * * ****** ** * * * * consensus_3932#0 AAATACTAATTCAATTCAATTTTGGGCGGGTAAACTATGTGATCTTTTCGTTTTAAATTA 360 consensus_3932#1 AAATACAAATGACATTAA--TTTGGGCGTGTAAACTATGTGATCTTTT-GTTTTAAATTA 279 consensus_3932#2 TA-TAGGAAC-AGATTA---TTTGGTTTTATCATTTGCTTATCACTACTGTTT--GCTCC 259 * ** ** *** ***** * * * * * **** * consensus_3932#0 GATTCACCTAATTCTTGTTNTNGAATGGTATCTAGTTTACTGNATTAAACGTTCTAGTTA 420 consensus_3932#1 GATTCACCTAATTTCTGTTT--GAATGGTATCTAGTTTAACTGTTTAAACGTTTTAGTTA 337 consensus_3932#2 AATGCAAAATGCAACATAACACTAATAGTGTGT-GTAAGTGTGGCAAAACTTAGCTAGTT 318 ** ** *** ** * * ** **** * * consensus_3932#0 TTAAATTCGTNTAGTNGCTGTTTAACANATTAAAAC--ATCATAAATTGGGNNAACTGAA 478 consensus_3932#1 TTAACTTCGTTTTGTT--TGTTTAACAA-TTAAAAC--ATCATAACTTGG---AACTGAA 389 consensus_3932#2 TTATGTTTGTTTGTGTACTGCTTAGTA--TTAAGACTGATTATCAATAAACCAGACAAAA 376 *** ** ** * ** *** * **** ** ** ** * * ** ** consensus_3932#0 AACCCCTAACAGCAAAACCTACAATNTGANATAGATAATCATT-----TAGGGCCAAATG 533 consensus_3932#1 ACCCCCTAGCAGCAAAAC-TAAATTTGAACATAGATCAANATTCTTTCTCTAGGCACAAT 448 consensus_3932#2 CATTTAATACAGAAAAAC---AAACAAGGAATATCTGCACGTC--------ATCCAAATT 425 *** ***** * *** * * ** * consensus_3932#0 NACAGAGTGAACAGAAACCTCTCAAAAACGCATCAATCGTNAAGGTGACACAAGTTAGTC 593 consensus_3932#1 GANAGAGTGAACAGAAACCTCTCAAAA-CGCATCAATCGTAA-GGTGAAACAAGT-AGTC 505 consensus_3932#2 GAAGGG--GAACTCTAAACTAGGTAATCCAAATGGATAACAAACAGTGTTGATGTGCATT 483 * * **** ** ** ** * ** ** * * ** * consensus_3932#0 CTTTACAATCCAACTGCGGCTCAGCAACAATTTNGGACGTCCCNTCTATAATGATCCC-- 651 consensus_3932#1 TNTTTCACATCAATTGCG--CTAGC--CAAATTNG--CAGTCCATCTTTAATGATCCGGA 559 consensus_3932#2 CGATTCAGCTCAAGCGTA----AACT-CAAACAA---CAGATCGACATCACCATTCCC-- 533 * ** *** * * * *** * * * * *** consensus_3932#0 AGCAGCGGGGATTGTGTAACAGCACGAAACAGAAACCAATCCTTAAATNATTACCTCCCT 711 consensus_3932#1 AGGAGCCGGGAT-GTGTAAC--CGAGAAACAGGAAACAACATCTAATTG--TACCTCCT- 613 consensus_3932#2 ----GAGTNGATGGTGAAAT-------AACGGTAACAGTGAATTGGTGGGGCTACACCCC 582 * *** *** ** *** * ** * * ** consensus_3932#0 GGCANTGGTGGTCAGAAATCAATGGAGGGGTGTGTTGTATTCCCTCCTNTG-TACCTGGT 770 consensus_3932#1 -GCAT-GGTG-TCACAAGCATGGAGGGGTGTGTGTNATACTATTCTTATCG-TACCTCGT 669 consensus_3932#2 AGCAT--AAGGTCACGCTTCACGAAAAGGCNTTTTTTTCTATTTGCCGACGCTTCCTCGC 640 *** * *** * * * * * * *** * consensus_3932#0 GTCAAGGTCTGCNCACCTATTAA--TATAAGGA-ACNGA-CTATCTGGGT--ACNATGGG 824 consensus_3932#1 GTCAAGTCTTGTGAGCTTATTANATNATAGCGACACAGA-TCANTTGGTTT-ATCA---- 723 consensus_3932#2 GGTTAANA-TGTGCATTT-TTAAAGTAAGCCAAAACGGNATTATTTCATCCCATAACACA 698 * * ** * *** * * ** * * * * * consensus_3932#0 GAACATACGGTGCCCANNGCAGAGGCGCACNNACNCATNGNTGTGAGNTNGAACTNACAC 884 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 AATCTCTCGCTGCCG--------------------------------------------- 713 consensus_3932#0 TAAATGGTGGTNGGNGGTAACAGTTTANACCACATTGAAACGGATGNCCTGGCACGACGA 944 consensus_3932#1 ------------------------------------------------------------ consensus_3932#2 ------------------------------------------------------------ consensus_3932#0 TTGTCTTACCCTTNTATNNNTGGGGAGGCGCANNGCGACCAGAGAG 990 consensus_3932#1 ---------------------------------------------- consensus_3932#2 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||