These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1219 fasta sequence [GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCAAAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTAGTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGCTGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAACAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACAGGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAGCCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGTATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGGTCATACATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTATNNTTTGCGTGAGTATTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCANCGTGCGCCCCATAGGGGCCGGAAAGATAAAAATAGGCACATTGAAAACACCAGCGAAAGCGAGCATCCGTATTATGATTCATTAACTGTGGAGGGTGGAGTGTCTCAACGTTTTCCCAAATACAAGTGGGAATTGTTTGGAATTGTTTTTTTAGCTCTATTTCATGGTGCTCTAATTTTGGAAACGATTCGAGTTTGCTCCTTCAAAACACATGGTGAAGGAGATTGAGAAGATCTTCGTCTGACGGGGAACGTCGTAAATGTCACTCGACTGTTCGTTTCAATCGGTTCCAGTGGCCGCGTGCGGAAAGGGCAGGTTAAATTTAGACTGACGACCGTTCACTCCATTAGCCTTAACAGGTTCCAGCTGAAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACATAGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGCTGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGACAGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGANATGCTTTTGGTGCAGTAAG] [+] EMBL AL696347 [GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCAAAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTAGTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGCTGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAACAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACAGGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAGCCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGTATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGGTCATACATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTATNNTTTGCGTGAGTATTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCANCGTGC ] [+] EMBL BX620001 [ TTCCTGCATTCTTCA GGCTGGTCATACATATATACATTTACGATAGCGTTTGTACATAGGTTTGCGATAGTAT TTTTGCGTGAGTATTTTAAACCGTGT TTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCAGCGTGCGCCCCATAGGGGCCGGAAAGATAAAAATAGGCACATTGAAAACACCAGCGAAAGCGAGCATCCGTATTATGATTCATTAACTGTGGAGGGTGGAGTGTCTCAACGTTTTCCCAAATACAAGTGGGAATTGTTTGGAATTGTTTTTTTAGCTCTATTTCATGGTGCTCTAATTTTGGAAACGATTCGAGTTTGCTCCTTCAAAACACATGGTGAAGGAGATTGAGAAGATCTTCGTCTGACGGGGAACGTCGTAAATGTCACTCGACTGTTCGTTTCAATCGGTTCCAGTGGCCGCGTGCGGAAAGGGCAGGTTAAATTTAGACTGACGACCGTTCACTCCATTAGCCTTAACAGGTTCCAGCTGAAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACATAGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGCTGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGACAGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGANATGCTTTTGGTGCAGTAAG] consensusID : consensus_3936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATACATATATACATTTACGATAGCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGAGTATTTTAAACCGTGTTTAACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGCGCCCCATANGGGCCGGAAAGATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAGCATCCGCTATTATGATTCATTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTTCCCAAATACAACGCTGGGAACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCCATGGGTGGCTCCTAATTTTGGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGTGACACGGACGACTTGACCGAACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTCCACTCGAACTNGGTGCGNTTTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGAGGCGAGCGTTAANAAGTTTACGGACTGGACGAACCGGTTCACCTCCACTATAGACCTTTAAACAGGGTTTCCANACTGAAAAGGCACAACTATTGATTTTACAAAACTACAAACACAAACGGGAGA] [+] EMBL AL933382 [TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATACATATATACATTTACGATAGCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGAGTATTTTAAACCGTGTTTAACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGCGCCCCATANGGGCCGGAAAGATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAGCATCCGCTATTATGATTCATTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTTCCCAAATACAACGCTGGGAACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCCATGGGTGGCTCCTAATTTTGGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGTGACACGGACGACTTGACCGAACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTCCACTCGAACTNGGTGCGNTTTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGAGGCGAGCGTTAANAAGTTTACGGACTGGACGAACCGGTTCACCTCCACTATAGACCTTTAAACAGGGTTTCCANACTGAAAAGGCACAACTATTGATTTTACAAAACTACAAACACAAACGGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3936#0 GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCA 60 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 AAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTA 120 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 GTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGC 180 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 TGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAA 240 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 CAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACA 300 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 GGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAG 360 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 CCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGT 420 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 ATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGG-TCATA 479 consensus_3936#1 -------------------TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATA 41 **** ******************* ***** ***** consensus_3936#0 CATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTA--TNNTTTGCGTGA 537 consensus_3936#1 CATATATACATTTACGATAGCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGA 101 ******************* ************ *********** * * ****** consensus_3936#0 GTATTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCC-ANCGTGC 596 consensus_3936#1 GTATTTTAAACCGTGTTTAACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGC 161 **************** * * **************************** ** * ***** consensus_3936#0 GCCCCATAGGGGCCGGAAAGATAAAAATAG-GCACATTGAAAA-CACCAGCGAAAGCGAG 654 consensus_3936#1 GCCCCATANGGGCCGGAAAGATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAG 221 ******** ************* ** **** ********* ** **************** consensus_3936#0 CATCCG-TATTATGATTCATTAA----CTGTGGAGGGTG-GAG-TGTCTCAACGT--TTT 705 consensus_3936#1 CATCCGCTATTATGATTCATTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTT 281 ****** **************** *** * **** *** *********** *** consensus_3936#0 CCCAAATACAAG--TGGGAATTGT----TTGGAATTGT----TTTTTTAGCTCTATTTC- 754 consensus_3936#1 CCCAAATACAACGCTGGGAACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCC 341 *********** ****** * * * ** * * * * * * *********** consensus_3936#0 ATGGT--GCTC-TAATTTTGGAAACGATTCGAGTTT-GCTCCTTCAAA-ACACATGGTG- 808 consensus_3936#1 ATGGGTGGCTCCTAATTTTGGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGT 401 **** **** ************************ *********** ****** *** consensus_3936#0 ---AAGGA------GATTGAGAAGATCTTCGTC-TGACGGGG-AACGT-CGTAA-ATGTC 855 consensus_3936#1 GACACGGACGACTTGACCGAACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTC 461 * *** ** ** ********* ******** ***** ***** ***** consensus_3936#0 -ACTCGAC-----TGTTCGTTTCAATC---GGTTCCAGTGG--CCGCGTGC---GGAAAG 901 consensus_3936#1 CACTCGAACTNGGTGCGNTTTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGA 521 ****** ** ****** ********** ******** * ** consensus_3936#0 GGCAGGTTAAATTTAGACTGACGACCGTTCACTCCA-TTAGCCTTAACAGGTTCCAGCTG 960 consensus_3936#1 GGCGAGCGTTAANAAGTTTACGGACTGGACGAACCGGTTCACCTCCACTA--TAGACCTT 579 *** * * ** * *** * * ** ** *** ** * * ** consensus_3936#0 AAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACAT 1020 consensus_3936#1 TAAACAGGGT--TTCCANACTGAAAAGGCACAACTATTGATTTTACAAAACTACAAACAC 637 ** ** * ** * * * *** ** * * ** * *** *** consensus_3936#0 AGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGC 1080 consensus_3936#1 AAACGGGAGA-------------------------------------------------- 647 * * * * consensus_3936#0 TGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGAC 1140 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 AGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGAN 1200 consensus_3936#1 ------------------------------------------------------------ consensus_3936#0 ATGCTTTTGGTGCAGTAAG 1219 consensus_3936#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||