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Anopheles gambiae
cluster # 3936 cluster # 3936       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3936#0 length = 1219 sequences # 2  
consensus_3936#1 length = 647 sequences # 1  

consensusID : consensus_3936#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1219
fasta sequence
                              [GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCAAAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTAGTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGCTGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAACAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACAGGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAGCCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGTATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGGTCATACATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTATNNTTTGCGTGAGTATTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCANCGTGCGCCCCATAGGGGCCGGAAAGATAAAAATAGGCACATTGAAAACACCAGCGAAAGCGAGCATCCGTATTATGATTCATTAACTGTGGAGGGTGGAGTGTCTCAACGTTTTCCCAAATACAAGTGGGAATTGTTTGGAATTGTTTTTTTAGCTCTATTTCATGGTGCTCTAATTTTGGAAACGATTCGAGTTTGCTCCTTCAAAACACATGGTGAAGGAGATTGAGAAGATCTTCGTCTGACGGGGAACGTCGTAAATGTCACTCGACTGTTCGTTTCAATCGGTTCCAGTGGCCGCGTGCGGAAAGGGCAGGTTAAATTTAGACTGACGACCGTTCACTCCATTAGCCTTAACAGGTTCCAGCTGAAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACATAGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGCTGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGACAGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGANATGCTTTTGGTGCAGTAAG]

[+] EMBL AL696347             [GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCAAAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTAGTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGCTGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAACAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACAGGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAGCCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGTATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGGTCATACATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTATNNTTTGCGTGAGTATTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCANCGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX620001             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTCCTGCATTCTTCA GGCTGGTCATACATATATACATTTACGATAGCGTTTGTACATAGGTTTGCGATAGTAT TTTTGCGTGAGTATTTTAAACCGTGT TTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCAGCGTGCGCCCCATAGGGGCCGGAAAGATAAAAATAGGCACATTGAAAACACCAGCGAAAGCGAGCATCCGTATTATGATTCATTAACTGTGGAGGGTGGAGTGTCTCAACGTTTTCCCAAATACAAGTGGGAATTGTTTGGAATTGTTTTTTTAGCTCTATTTCATGGTGCTCTAATTTTGGAAACGATTCGAGTTTGCTCCTTCAAAACACATGGTGAAGGAGATTGAGAAGATCTTCGTCTGACGGGGAACGTCGTAAATGTCACTCGACTGTTCGTTTCAATCGGTTCCAGTGGCCGCGTGCGGAAAGGGCAGGTTAAATTTAGACTGACGACCGTTCACTCCATTAGCCTTAACAGGTTCCAGCTGAAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACATAGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGCTGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGACAGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGANATGCTTTTGGTGCAGTAAG]


>consensus_3936#0 GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCA AAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTA GTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGC TGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAA CAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACA GGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAG CCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGT ATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGGTCATAC ATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTATNNTTTGCGTGAGTA TTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCCANCGTGCGCCC CATAGGGGCCGGAAAGATAAAAATAGGCACATTGAAAACACCAGCGAAAGCGAGCATCCG TATTATGATTCATTAACTGTGGAGGGTGGAGTGTCTCAACGTTTTCCCAAATACAAGTGG GAATTGTTTGGAATTGTTTTTTTAGCTCTATTTCATGGTGCTCTAATTTTGGAAACGATT CGAGTTTGCTCCTTCAAAACACATGGTGAAGGAGATTGAGAAGATCTTCGTCTGACGGGG AACGTCGTAAATGTCACTCGACTGTTCGTTTCAATCGGTTCCAGTGGCCGCGTGCGGAAA GGGCAGGTTAAATTTAGACTGACGACCGTTCACTCCATTAGCCTTAACAGGTTCCAGCTG AAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACAT AGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGC TGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGAC AGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGAN ATGCTTTTGGTGCAGTAAG



consensusID : consensus_3936#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence
                              [TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATACATATATACATTTACGATAGCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGAGTATTTTAAACCGTGTTTAACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGCGCCCCATANGGGCCGGAAAGATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAGCATCCGCTATTATGATTCATTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTTCCCAAATACAACGCTGGGAACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCCATGGGTGGCTCCTAATTTTGGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGTGACACGGACGACTTGACCGAACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTCCACTCGAACTNGGTGCGNTTTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGAGGCGAGCGTTAANAAGTTTACGGACTGGACGAACCGGTTCACCTCCACTATAGACCTTTAAACAGGGTTTCCANACTGAAAAGGCACAACTATTGATTTTACAAAACTACAAACACAAACGGGAGA]

[+] EMBL AL933382             [TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATACATATATACATTTACGATAGCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGAGTATTTTAAACCGTGTTTAACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGCGCCCCATANGGGCCGGAAAGATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAGCATCCGCTATTATGATTCATTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTTCCCAAATACAACGCTGGGAACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCCATGGGTGGCTCCTAATTTTGGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGTGACACGGACGACTTGACCGAACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTCCACTCGAACTNGGTGCGNTTTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGAGGCGAGCGTTAANAAGTTTACGGACTGGACGAACCGGTTCACCTCCACTATAGACCTTTAAACAGGGTTTCCANACTGAAAAGGCACAACTATTGATTTTACAAAACTACAAACACAAACGGGAGA]


>consensus_3936#1 TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATACATATATACATTTACGATA GCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGAGTATTTTAAACCGTGTTTA ACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGCGCCCCATANGGGCCGGAAA GATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAGCATCCGCTATTATGATTCA TTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTTCCCAAATACAACGCTGGGA ACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCCATGGGTGGCTCCTAATTTT GGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGTGACACGGACGACTTGACCG AACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTCCACTCGAACTNGGTGCGNT TTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGAGGCGAGCGTTAANAAGTTT ACGGACTGGACGAACCGGTTCACCTCCACTATAGACCTTTAAACAGGGTTTCCANACTGA AAAGGCACAACTATTGATTTTACAAAACTACAAACACAAACGGGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3936#0      GCAGATCCCCACGCAGNNTANCTTTACATCGTTGTCGTCAAACCCAAGAAAGCGAATGCA 60
consensus_3936#1      ------------------------------------------------------------
                                                                                  

consensus_3936#0      AAACCACTTACATGCATACTTAGTAGTATATATACAGACATGCGTACTTGCTAAGAGTTA 120
consensus_3936#1      ------------------------------------------------------------
                                                                                  

consensus_3936#0      GTTAGTTAAGAAAGATGTTTAGCAATAAACCCGACCGGTATTAAGTTCTCTCCCCGCGGC 180
consensus_3936#1      ------------------------------------------------------------
                                                                                  

consensus_3936#0      TGTGTGTCCCTTAGTGCTCGCTCCATTACCCCCCGCATTACCTCATTAGGCGATTAGGAA 240
consensus_3936#1      ------------------------------------------------------------
                                                                                  

consensus_3936#0      CAGCGGCTGGGACGCACGCGGGAGAGATTTCTACTGACTGAGGGTGCTTGGTATATTACA 300
consensus_3936#1      ------------------------------------------------------------
                                                                                  

consensus_3936#0      GGTCAGTTAGGTCCGGTGCTTTGCAGGGTGATCCCTTTGCACAACGATCAACTGCGGCAG 360
consensus_3936#1      ------------------------------------------------------------
                                                                                  

consensus_3936#0      CCGGAAATAGATTAATTAAGGAAAGCTTGGCACGTTCGTCGCTTGCTTACCGTTGAGTGT 420
consensus_3936#1      ------------------------------------------------------------
                                                                                  

consensus_3936#0      ATTCAGTTTTCGTAATGTTGTGCTAGTTTATTTTCCTGCATTCTTCANAGCTGG-TCATA 479
consensus_3936#1      -------------------TAGCTAANCTATTTTCCTGCATTCTTCAACGCTGGGTCATA 41
                                           ****   *******************  ***** *****

consensus_3936#0      CATATATACATTTACGATANCGTTTGTACATAGGTTTGCGATAGTA--TNNTTTGCGTGA 537
consensus_3936#1      CATATATACATTTACGATAGCGTTTGTACATAAGTTTGCGATAGNTATTTTCTCGCGTGA 101
                      ******************* ************ ***********    *   * ******

consensus_3936#0      GTATTTTAAACCGTGTCTTAGGGTCAGCGCATTTAAAGCTTTTCTACTTCCC-ANCGTGC 596
consensus_3936#1      GTATTTTAAACCGTGTTTAACGGTCAGCGCATTTAAAGCTTTTCTACTTNCCCAGCGTGC 161
                      **************** * * **************************** ** * *****

consensus_3936#0      GCCCCATAGGGGCCGGAAAGATAAAAATAG-GCACATTGAAAA-CACCAGCGAAAGCGAG 654
consensus_3936#1      GCCCCATANGGGCCGGAAAGATNAACATAGTGCACATTGANAAACACCAGCGAAAGCGAG 221
                      ******** ************* ** **** ********* ** ****************

consensus_3936#0      CATCCG-TATTATGATTCATTAA----CTGTGGAGGGTG-GAG-TGTCTCAACGT--TTT 705
consensus_3936#1      CATCCGCTATTATGATTCATTAAGCTGCTGCGAGCGGTGCGAGCTGTCTCAACGTATTTT 281
                      ****** ****************    *** *   **** *** ***********  ***

consensus_3936#0      CCCAAATACAAG--TGGGAATTGT----TTGGAATTGT----TTTTTTAGCTCTATTTC- 754
consensus_3936#1      CCCAAATACAACGCTGGGAACTNTGGTCTGGGNACTCTGTCTTNTCTCAGCTCTATTTCC 341
                      ***********   ****** * *    * ** * * *    * * * *********** 

consensus_3936#0      ATGGT--GCTC-TAATTTTGGAAACGATTCGAGTTT-GCTCCTTCAAA-ACACATGGTG- 808
consensus_3936#1      ATGGGTGGCTCCTAATTTTGGAAACGATTCGAGTTTTGCTCCTTCAAAGACACATTGTGT 401
                      ****   **** ************************ *********** ****** *** 

consensus_3936#0      ---AAGGA------GATTGAGAAGATCTTCGTC-TGACGGGG-AACGT-CGTAA-ATGTC 855
consensus_3936#1      GACACGGACGACTTGACCGAACGCATCTTCGTCCTGACGGGGGAACGTTCGTAACATGTC 461
                         * ***      **  **    ********* ******** ***** ***** *****

consensus_3936#0      -ACTCGAC-----TGTTCGTTTCAATC---GGTTCCAGTGG--CCGCGTGC---GGAAAG 901
consensus_3936#1      CACTCGAACTNGGTGCGNTTTTCAACTCTGGGTTCCAGTGTGCCCGCGTGCCGNGAAAGA 521
                       ******      **    ******     **********   ********   * **  

consensus_3936#0      GGCAGGTTAAATTTAGACTGACGACCGTTCACTCCA-TTAGCCTTAACAGGTTCCAGCTG 960
consensus_3936#1      GGCGAGCGTTAANAAGTTTACGGACTGGACGAACCGGTTCACCTCCACTA--TAGACCTT 579
                      ***  *    *   **  *   *** *  *   **  **  ***  **    *  * ** 

consensus_3936#0      AAAGCAATATGATTTAAAAATAAAACACAACGGACACAACATACGCACGATCACATACAT 1020
consensus_3936#1      TAAACAGGGT--TTCCANACTGAAAAGGCACAACTATTGATTTTACAAAACTACAAACAC 637
                       ** **   *  **  * * * ***    **    *     *   **  *  *** *** 

consensus_3936#0      AGCCCGTATCCATAGCACAGTGGATCATCAATCCGCATAGAATATGATCCGCACGCTTGC 1080
consensus_3936#1      AAACGGGAGA-------------------------------------------------- 647
                      *  * * *                                                    

consensus_3936#0      TGTAAGTTGATGAGAAATGAGGAGAAATGAGAAATCGCTACGCTTCGCACAGTTTAAGAC 1140
consensus_3936#1      ------------------------------------------------------------
                                                                                  

consensus_3936#0      AGTGNTGTAGTGCGCAGATTTAGTCNACGGCNATATTTATTATACCTTCNCATGGGGGAN 1200
consensus_3936#1      ------------------------------------------------------------
                                                                                  

consensus_3936#0      ATGCTTTTGGTGCAGTAAG 1219
consensus_3936#1      -------------------
                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)