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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3941#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 867 fasta sequence
[CCCTAGCAGAATTCCCCGAGGTTAACACGAAACTGAAGCTNGTGTTTGCGATCGGANNTAACTACGAGGTAGTGCGGAAGTGCGCTGGAGCGTGCCGTGCCTCGCGGGGGACACGTTGCCTCCAATCTACGTGTTTGAAGGTGGTTCAATGGACGACTGTTGAAACATTGCCTGACGTGACTTCACTTGNGAACGTGAGACGNGGGAAAGCCGAANAAACGTTTGTGGCACCTTTATCTTGGGTTGACTCCAACAANAAACGNGGTGTGCCGCAGCACTATTATGGTAGTTTCCCTACCCGGAAACCATTTCACGGGAGGACCCCAATTTAAAAGTGGCGGTTGCCAAGAGTTAAACCAATACNGCNCTTGGCGCCTATGCNCACTTTGCGAACACTCTGAACAGGAANTAACTTAGGGCAACAACACGGGGCGTCGTTGTTNGGATTTGGGGCGCCAACANAGTTTACCCCCCGGTAAAGTGGCTTAACACAAACCTATGTANCAAGCGATTATTCCCAAGGACNTGGGCNCCACCCCTTTATACTAACTTATGNGAGGAAGCAGGGAAACAACTGGAGAGTACACAAATGGGGGACGTTACACCCAAACAATTGTCGTCCGTTGGTAANCGGCATAACACCCNGGNTATACACCGATTCTATTNTAAATCACCACCNGGATNGTATCNTGNGTACCACTNGGTGTTCATCCAGGGAACGGCTTTTCCTACATTTTCCTAATACGTTCCTGAGGCGCAAAAAGTANNGACCCCACCGATATTTTACAANAACATCTCCGGACATAATGCTGNTGTNCACAGTTGCCCGAAAGGAGTATGANTAACTACTGGGGTGNAAAGNAGTGT]
[+] EMBL AL696412 [CCCTAGCAGAATTCCCCGAGGTTAACACGAAACTGAAGCTNGTGTTTGCGATCGGANNTAACTACGAGGTAGTGCGGAAGTGCGCTGGAGCGTGCCGTGCCTCGCGGGGGACACGTTGCCTCCAATCTACGTGTTTGAAGGTGGTTCAATGGACGACTGTTGAAACATTGCCTGACGTGACTTCACTTGNGAACGTGAGACGNGGGAAAGCCGAANAAACGTTTGTGGCACCTTTATCTTGGGTTGACTCCAACAANAAACGNGGTGTGCCGCAGCACTATTATGGTAGTTTCCCTACCCGGAAACCATTTCACGGGAGGACCCCAATTTAAAAGTGGCGGTTGCCAAGAGTTAAACCAATACNGCNCTTGGCGCCTATGCNCACTTTGCGAACACTCTGAACAGGAANTAACTTAGGGCAACAACACGGGGCGTCGTTGTTNGGATTTGGGGCGCCAACANAGTTTACCCCCCGGTAAAGTGGCTTAACACAAACCTATGTANCAAGCGATTATTCCCAAGGACNTGGGCNCCACCCCTTTATACTAACTTATGNGAGGAAGCAGGGAAACAACTGGAGAGTACACAAATGGGGGACGTTACACCCAAACAATTGTCGTCCGTTGGTAANCGGCATAACACCCNGGNTATACACCGATTCTATTNTAAATCACCACCNGGATNGTATCNTGNGTACCACTNGGTGTTCATCCAGGGAACGGCTTTTCCTACATTTTCCTAATACGTTCCTGAGGCGCAAAAAGTANNGACCCCACCGATATTTTACAANAACATCTCCGGACATAATGCTGNTGTNCACAGTTGCCCGAAAGGAGTATGANTAACTACTGGGGTGNAAAGNAGTGT]
consensusID : consensus_3941#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence
[GGCATATAGCTCGAGAACAACTACGTGTGCAGTGACGATGGCGAACTACAGTACGGTGTACGATGAGACCACCCGAACCTGGCACGGTCCTACCGTGAAGCATCTGTTCAACCCGGAGGCCAGCATGGGACAGATCATGCTGGAGGTACTGAGCCGCTCGCCAGATCGCGTGATGCAGCAGGACATGGACACTGGGCGATCGCTGACGTACGCCGAGTTTCGGACGCGTTTGATCCGCTTCGCCCAAAACCTTACGGAGGTCGGTCTGCGGGCAGGTGAGGTGGTAGTTTTAGCCAATGCAAACAGTGAAAATCTGGCTCCCCTGGCGTGTGCCTTGCTAACGATCGGTGTACCGTTTAATCCGCTGGCGCCGGCCTTTAACGAGGACGATATGGAAAACATGCTGCGAACAACGAAACCGAAGCTGGTGTTTGCCGATGCGGACAACTACGAGGTAGTGCGGAAGGCGCTGGAGCGTGCCGTGCCTCGCGGGGACACGTTGCCTCCAATCTACGTGTTTGAGTGTACAAGGGACGATGTGAAACATGCGGAGGACTTC]
[+] EMBL BX628122 [GGCATATAGCTCGAGAACAACTACGTGTGCAGTGACGATGGCGAACTACAGTACGGTGTACGATGAGACCACCCGAACCTGGCACGGTCCTACCGTGAAGCATCTGTTCAACCCGGAGGCCAGCATGGGACAGATCATGCTGGAGGTACTGAGCCGCTCGCCAGATCGCGTGATGCAGCAGGACATGGACACTGGGCGATCGCTGACGTACGCCGAGTTTCGGACGCGTTTGATCCGCTTCGCCCAAAACCTTACGGAGGTCGGTCTGCGGGCAGGTGAGGTGGTAGTTTTAGCCAATGCAAACAGTGAAAATCTGGCTCCCCTGGCGTGTGCCTTGCTAACGATCGGTGTACCGTTTAATCCGCTGGCGCCGGCCTTTAACGAGGACGATATGGAAAACATGCTGCGAACAACGAAACCGAAGCTGGTGTTTGCCGATGCGGACAACTACGAGGTAGTGCGGAAGGCGCTGGAGCGTGCCGTGCCTCGCGGGGACACGTTGCCTCCAATCTACGTGTTTGAGTGTACAAGGGACGATGTGAAACATGCGGAGGACTTC]
consensusID : consensus_3941#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[CAGAATNGCCCGANGTGGATGACACTGGGCGATCGCTGACGTACGCGAGTTCGGACGCGTTTGATCGCTTCGCCAAAACTTACGGAGGTCGGTCTGCGGGCAGGTGAGGTGTAGTTTAGCCATGCAACAGTGAAATCTGGCTCCCCTGGCGTGTGCTTGCTAACGATCGGTGTACGTTAATCCGTGGGCCGGCTTTTACGAGGACGATATGGGAAACATGTTGGGAACAGAACGAATGGGTGTTTGCCGATGCGGGACAATACAGTATGCGGAAGCCTGGAACGTGCCGCCTCCGGGGACACGTTGGCTCCCATCTACCT]
[+] EMBL AL697136 [CAGAATNGCCCGANGTGGATGACACTGGGCGATCGCTGACGTACGCGAGTTCGGACGCGTTTGATCGCTTCGCCAAAACTTACGGAGGTCGGTCTGCGGGCAGGTGAGGTGTAGTTTAGCCATGCAACAGTGAAATCTGGCTCCCCTGGCGTGTGCTTGCTAACGATCGGTGTACGTTAATCCGTGGGCCGGCTTTTACGAGGACGATATGGGAAACATGTTGGGAACAGAACGAATGGGTGTTTGCCGATGCGGGACAATACAGTATGCGGAAGCCTGGAACGTGCCGCCTCCGGGGACACGTTGGCTCCCATCTACCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3941#1 ------------------------------------------------------------
consensus_3941#2 ------------------------------------------------------------
consensus_3941#0 CCCTAGCAGAATTCCCCGAGGTTAACACGAAACTGAAGCTNGTGTTTGCGATCGGANNTA 60
consensus_3941#1 ------------------------------------------------------------
consensus_3941#2 ------------------------------------------------------------
consensus_3941#0 ACTACGAGGTAGTGCGGAAGTGCGCTGGAGCGTGCCGTGCCTCGCGGGGGACACGTTGCC 120
consensus_3941#1 ---------------GGCATATAGCTCGA-GAACAACTACGTGTGCAGTGACGATGGCGA 44
consensus_3941#2 ------------------------------------------------------------
consensus_3941#0 TCCAATCTACGTGTTTGAAGGTGGTTCAATGGACGACTGTTGAAACATTGCCTGACGTGA 180
consensus_3941#1 ACTACAGTACGG-TGTACGATGAGACCACCCGAACCTGGCACGGTCCTACCGTGAAGCAT 103
consensus_3941#2 ------------------------------------------------------------
consensus_3941#0 CTTCACTTGNGAACGTGAGACGNGGGAAAGCCGAANAAACGTTTGTGGCACCTTTATCTT 240
consensus_3941#1 CTGTTCAACCCGGAGGCCAGCATGGGACAGATCA-TGCTGGAGGTACTGAGCCGCTCGCC 162
consensus_3941#2 ----------------------------------------------------------CA 2
consensus_3941#0 GGGTTGACTCCAACAANAAACGNGGTGTGCCGCAGCACTATTATGGTAGTTTCCCTACCC 300
*
consensus_3941#1 AGATCGCGTGATGCAGCAGGACATGGACACTG----GGCGATCGCTGACG--TACGCCGA 216
consensus_3941#2 GAATNGCCCGANGT----GGAT---GACACTG----GGCGATCGCTGACG--TACGC-GA 48
consensus_3941#0 GGAAACCATTTCACGGGAGGACCCCAATTTAAAAGTGGCGGTTGCCAAGAGTTAAACCAA 360
* * *** * **** * ** * ** * *
consensus_3941#1 ----GTTTCGGACGCGTTTGATCCGCTTCGCCCAAAACCTTA-CGGAGGTCGGTCTGCGG 271
consensus_3941#2 ----GTT-CGGACGCGTTTGATC-GCTTCGCCAAAA--CTTA-CGGAGGTCGGTCTGCGG 99
consensus_3941#0 TACNGCNCTTGGCGCCTATGCNC-ACTTTGCGAACACTCTGAACAGGAANTAACTTAGGG 419
* * *** * ** * *** ** * * ** * * * * **
consensus_3941#1 -----GCAGGTGAGGTGGTAGTTTTAGCCAATGCAAACAGTGAAAATCTGGCTCCCCTGG 326
consensus_3941#2 -----GCAGGTGAGGTG-TAGTTT-AGCCA-TGCAA-CAGTGAAA-TCTGGCTCCCCTGG 149
consensus_3941#0 CAACAACACGGGGCGTCGTTGTTNGGATTTGGGGCGCCAACANAG--TTTACCCCCCGGT 477
** * * ** * *** * ** * * * **** *
consensus_3941#1 CGTGTGCCTTGCTAACGATCGGTGTACCGT----TTAATCCGCTGGCGCCGGCCTTTAAC 382
consensus_3941#2 CGTGTGC-TTGCTAACGATCGGTGTACG------TTAATCCGTGGGC--CGGCTTTTA-C 199
consensus_3941#0 AAAGTGGCTTAACACAAACCTATGTANCAAGCGATTATTCCCAAGGACNTGGGCNCCACC 537
*** ** * * * **** *** *** ** ** * *
consensus_3941#1 GAGGACGATATGGAAAAC-ATGCTGCGAACAACGAAACCGAAGCTGGTGTTTGCCGATGC 441
consensus_3941#2 GAGGACGATATGGGAAAC-ATGTTGGGAACAG---AACGAATG--GGTGTTTGCCGATGC 253
consensus_3941#0 C----CTTTATACTAACTTATGNGAGGAAGCAGGGAAACAACTGGAGAGTACACAAATGG 593
* *** ** *** *** ** * * ** * ***
consensus_3941#1 GGACAACTACGAGGTAGTG--CGGAAGGCGCTGGAGCGTGCCGTGCCTCGCGGGG-ACAC 498
consensus_3941#2 GGGACAATACA--GTA-TG--CGGAAGCC--TGGAACGTGCCG--CCTC-CGGGG-ACAC 302
consensus_3941#0 GGGACGTTACACCCAAACAATTGTCGTCCGTTGGTAANCGGCATAACACCCNGGNTATAC 653
** *** * * * *** * * * * * ** * **
consensus_3941#1 GTTGCCTCCAATCTACGTGTTTGAGTGTACAAGGGACGATGTGAAACATGCGGAGGACTT 558
consensus_3941#2 GTTGGCTCCCATCTACCT------------------------------------------ 320
consensus_3941#0 ACCGATTCTATTNTAAATCACCACCNGGATNGTATCNTGNGTACCACTNGGTGTTCATCC 713
* ** * ** *
consensus_3941#1 C----------------------------------------------------------- 559
consensus_3941#2 ------------------------------------------------------------
consensus_3941#0 AGGGAACGGCTTTTCCTACATTTTCCTAATACGTTCCTGAGGCGCAAAAAGTANNGACCC 773
consensus_3941#1 ------------------------------------------------------------
consensus_3941#2 ------------------------------------------------------------
consensus_3941#0 CACCGATATTTTACAANAACATCTCCGGACATAATGCTGNTGTNCACAGTTGCCCGAAAG 833
consensus_3941#1 ----------------------------------
consensus_3941#2 ----------------------------------
consensus_3941#0 GAGTATGANTAACTACTGGGGTGNAAAGNAGTGT 867
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||