These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3944#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1001 fasta sequence [CCGCCCACGCGTCCGGCGATGGTGGCGGTGGAGGAGGCGGTGGCGGTGGCGGCGGTGGTCCCAAGCACAAGAAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGGAGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGGTGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAAAAGCTGGAGAAGCGGCAGGAAGTGAAGGCGGCGGCGGCGGCCACCGCAGCGACTGCGCCGGTCCTGCAGACGGCCACCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGTCGATGGACATACGGATCGACAACTTCGACGTGTCGTTCGGCGACAAGACGCTGCTGCAGAACGCTGATTTGCTGCTGGCTTCCGGCCGGCGGTACGGGTTCGTCGGGCGGAACGGGCTGGGCAAGACGACGCTGCTGAAGATGATTTCCGGCAAGCAGCTGCAAATCCCCAGCCACATCTCGGTGCTGCACGTCGAGCAGGAGGTGGTGGGCGACGATACGACTGCCCTGGACAGCGTGCTCGAGGTCGACACGGTGCGGACGGAGCTGTTGCAGCGCGAGCGGGACCTGAACGCGCAGATAGCGGCCGGCTCGACCGATGCCAACCTTGGCAACGAGCTGTCCGAGGTGTACAATCAACTGCAGACGATCGAGGCGGACAAAGCGCCGGCCCGTGCCTCCATCATCCTGAACGGGTTGGGCTTCACGAAGGAGATGCAGGCCCGTGCGACCCGTACCTTCTCGGGCGGCTGGCGTATGCGACTCGCGCTCGCCCGGGCCCTCTTCTCCAAGCCCGAGCTGCTGCTGCTCGACGAACCGACGAACATGTTGGACATCAAGGCAATCATCTGGCTGGAGAACTATCTGCAGAACTGGCCCACGACGCTGCTGGTCGTGTCGCACGACCGGAACTTCCTCGAC] [+] EMBL BM650041 [CCGCCCACGCGTCCGGCGATGGTGGCGGTGGAGGAGGCGGTGGCGGTGGCGGCGGTGGTCCCAAGCACAAGAAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGGAGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGGTGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAAAAGCTGGAGAAGCGGCAGGAAGTGAAGGCGGCGGCGGCGGCCACCGCAGCGACTGCGCCGGTCCTGCAGACGGCCACCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGTCGATGGACATACGGATCGACAACTTCGACGTGTCGTTCGGCGACAAGACGCTGCTGCAGAACGCTGATTTGCTGCTGGCTTCCGGCCGGCGGTACGGGTTCGTCGGGCGGAACGGGCTGGGCAAGACGACGCTGCTG ] [+] EMBL BM629706 [ ccgGGCGGTACGGGTTCGTCGGGCGGAACGGGCTGGGCAAGACGACGCTGCTGAAGATGATTTCCGGCAAGCAGCTGCAAATCCCCAGCCACATCTCGGTGCTGCACGTCGAGCAGGAGGTGGTGGGCGACGATACGACTGCCCTGGACAGCGTGCTCGAGGTCGACACGGTGCGGACGGAGCTGTTGCAGCGCGAGCGGGACCTGAACGCGCAGATAGCGGCCGGCTCGACCGATGCCAACCTTGGCAACGAGCTGTCCGAGGTGTACAATCAACTGCAGACGATCGAGGCGGACAAAGCGCCGGCCCGTGCCTCCATCATCCTGAACGGGTTGGGCTTCACGAAGGAGATGCAGGCCCGTGCGACCCGTACCTTCTCGGGCGGCTGGCGTATGCGACTCGCGCTCGCCCGGGCCCTCTTCTCCAAGCCCGAGCTGCTGCTGCTCGACGAACCGACGAACATGTTGGACATCAAGGCAATCATCTGGCTGGAGAACTATCTGCAGAACTGGCCCACGACGCTGCTGGTCGTGTCGCACGACCGGAACTTCCTCGAC] consensusID : consensus_3944#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGGAGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGGTGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAGAAGCTGGAGAAGCGGCAGGAGGTGAAAGGCGGCGGCGGCGGCCACCGCAGCGACGGCGCCGGTCCTGCAGACGGCCACCCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGTCGATG] [+] EMBL BM599706 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGGAGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGGTGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAGAAGCTGGAGAAGCGGCAGGAGGTGAAAGGCGGCGGCGGCGGCCACCGCAGCGACGGCGCCGGTCCTGCAGACGGCCACCCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGTCGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3944#0 CCGCCCACGCGTCCGGCGATGGTGGCGGTGGAGGAGGCGGTGGCGGTGGCGGCGGTGGTC 60 consensus_3944#1 CCGCCCACGCGTCCGCCCACG----------------CGTCCGCCCACGCGTCCG----C 40 *************** * * * ** ** *** * * * consensus_3944#0 CCAAGCACAAGAAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGG 120 consensus_3944#1 CCACGCGTCCGA-GATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGG 99 *** ** ** *********************************************** consensus_3944#0 AGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGG 180 consensus_3944#1 AGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGG 159 ************************************************************ consensus_3944#0 TGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAAAAGCTGGAGAAGCGGC 240 consensus_3944#1 TGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAGAAGCTGGAGAAGCGGC 219 ******************************************* **************** consensus_3944#0 AGGAAGTGAA-GGCGGCGGCGGCGGCCACCGCAGCGACTGCGCCGGTCCTGCAGACGGCC 299 consensus_3944#1 AGGAGGTGAAAGGCGGCGGCGGCGGCCACCGCAGCGACGGCGCCGGTCCTGCAGACGGCC 279 **** ***** *************************** ********************* consensus_3944#0 ACC-GCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCG 358 consensus_3944#1 ACCCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCG 339 *** ******************************************************** consensus_3944#0 GTCGATGGACATACGGATCGACAACTTCGACGTGTCGTTCGGCGACAAGACGCTGCTGCA 418 consensus_3944#1 GTCGATG----------------------------------------------------- 346 ******* consensus_3944#0 GAACGCTGATTTGCTGCTGGCTTCCGGCCGGCGGTACGGGTTCGTCGGGCGGAACGGGCT 478 consensus_3944#1 ------------------------------------------------------------ consensus_3944#0 GGGCAAGACGACGCTGCTGAAGATGATTTCCGGCAAGCAGCTGCAAATCCCCAGCCACAT 538 consensus_3944#1 ------------------------------------------------------------ consensus_3944#0 CTCGGTGCTGCACGTCGAGCAGGAGGTGGTGGGCGACGATACGACTGCCCTGGACAGCGT 598 consensus_3944#1 ------------------------------------------------------------ consensus_3944#0 GCTCGAGGTCGACACGGTGCGGACGGAGCTGTTGCAGCGCGAGCGGGACCTGAACGCGCA 658 consensus_3944#1 ------------------------------------------------------------ consensus_3944#0 GATAGCGGCCGGCTCGACCGATGCCAACCTTGGCAACGAGCTGTCCGAGGTGTACAATCA 718 consensus_3944#1 ------------------------------------------------------------ consensus_3944#0 ACTGCAGACGATCGAGGCGGACAAAGCGCCGGCCCGTGCCTCCATCATCCTGAACGGGTT 778 consensus_3944#1 ------------------------------------------------------------ consensus_3944#0 GGGCTTCACGAAGGAGATGCAGGCCCGTGCGACCCGTACCTTCTCGGGCGGCTGGCGTAT 838 consensus_3944#1 ------------------------------------------------------------ consensus_3944#0 GCGACTCGCGCTCGCCCGGGCCCTCTTCTCCAAGCCCGAGCTGCTGCTGCTCGACGAACC 898 consensus_3944#1 ------------------------------------------------------------ consensus_3944#0 GACGAACATGTTGGACATCAAGGCAATCATCTGGCTGGAGAACTATCTGCAGAACTGGCC 958 consensus_3944#1 ------------------------------------------------------------ consensus_3944#0 CACGACGCTGCTGGTCGTGTCGCACGACCGGAACTTCCTCGAC 1001 consensus_3944#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||