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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 738 fasta sequence
[CTCTATGCAGAATCCNCGGTTATACGGAGTGATCGTCTTCGTCCGCGGCAATAATGTTACCAGGAGGACAACAAAGTAGACAAGAGTGACGAGATGGAAGACTGCGACTCCAAGAAACGCGGCTGACTTTGATGGAAGAGGTGCTACTGTTGGGCTAAGGATAAGTGAGGGCTACACATCATTCTGGAACGATTTGCTATCGAGCGGGTTTGCCGAGGATTGTATTCCTTGAATTGACTGGCCTTCCGGCGTATTCAAACTGGGCGGAGGCCGGCTATTGCGAANGGGAAAGGGGGTATTGTGCCACAGCCGAAAAAACAATCCTCAAATTCCGAAAACACCGGAACCGGGTTGCATTGTTCACTTGCATCCGAACATGAAGAGGTCCTTGACACGAGCAATTATTTANACCGGAAACANCGTTGCCCCCAACCCNGGAAAGAANCCAATNTCAAAAGGCCTTGGGAATTCGNAAATACTTATGGAACGCACGNGGGGAAAACATTGNGAACAGTTCCCCGGNTCAACGACATTACGGCGNTCATTCGCAGGTAGGAACACATCANTTGTTGCAGCCGGAAGACGGACGTAAGACCCACAGGACACTANTAAGGTTCCGAAAAAACAGGAGNTTGGTAACCTTAAAGACGGAACNGGGAANGAAAAAGCAAAACAANAGTATATATACTACGCTTAATATCCGGATTAACTTGGACNGGAGCGATCAACAATTCCAAC]
[+] EMBL AL696442 [CTCTATGCAGAATCCNCGGTTATACGGAGTGATCGTCTTCGTCCGCGGCAATAATGTTACCAGGAGGACAACAAAGTAGACAAGAGTGACGAGATGGAAGACTGCGACTCCAAGAAACGCGGCTGACTTTGATGGAAGAGGTGCTACTGTTGGGCTAAGGATAAGTGAGGGCTACACATCATTCTGGAACGATTTGCTATCGAGCGGGTTTGCCGAGGATTGTATTCCTTGAATTGACTGGCCTTCCGGCGTATTCAAACTGGGCGGAGGCCGGCTATTGCGAANGGGAAAGGGGGTATTGTGCCACAGCCGAAAAAACAATCCTCAAATTCCGAAAACACCGGAACCGGGTTGCATTGTTCACTTGCATCCGAACATGAAGAGGTCCTTGACACGAGCAATTATTTANACCGGAAACANCGTTGCCCCCAACCCNGGAAAGAANCCAATNTCAAAAGGCCTTGGGAATTCGNAAATACTTATGGAACGCACGNGGGGAAAACATTGNGAACAGTTCCCCGGNTCAACGACATTACGGCGNTCATTCGCAGGTAGGAACACATCANTTGTTGCAGCCGGAAGACGGACGTAAGACCCACAGGACACTANTAAGGTTCCGAAAAAACAGGAGNTTGGTAACCTTAAAGACGGAACNGGGAANGAAAAAGCAAAACAANAGTATATATACTACGCTTAATATCCGGATTAACTTGGACNGGAGCGATCAACAATTCCAAC]
consensusID : consensus_3945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CCGCCCACGCGTCCGCGAGGACGGCGGCCTAAAACGGCATCGGCTGAACGATGAATCGAACTGACGGGCTTGTGCGACGTGTAAAAGCACGCGACACCGAATCGAACGGAGGATCGTCTTCGTCCGCGGCAAATAATGTCGACCAGGAGGACAACAAAGTAGACAAGGAGGACGAGATGGAAGACTGCGACTCCAAGGAAACGCGGCTGACTTTGATGGAAGAGGTGCTGCTGTTGGGGCTAAAGGATAAGGAGGGCTACACATCATTCTGGAACGATTGCATATCGAGCGGGTTGCGAGGATGTATCCTGATTGAGCTGGGCCTTCGCGGGCGTATCGAACTGGAGCGGGCCGGTATGCGAAGGAAGGGTTTGTGCACGCGAAAAATCATTCTCAAATCCGACACACCGACCGGTGATGTACTGCTCGACGAGGCCTTGAAACATATTAAAGAAACGTGCCCACCGGAGACCATTCAGAGCTGGATCGAATATTTGAGCGGGGAAACATGGAATCCGTTAAAGATACGCTATCAGCTGAAAAATGTGCGCGAGCGGCTAGCCAAGAATTTAGTCGAAAAGGGTGTACTAACGACGGAGAAACAAAATTTTCTCCTATTCGATATGACGACACATCCACTAACTGATAACGTTATCAAGTGCCGGTTG]
[+] EMBL BM578400 [CCGCCCACGCGTCCGCGAGGACGGCGGCCTAAAACGGCATCGGCTGAACGATGAATCGAACTGACGGGCTTGTGCGACGTGTAAAAGCACGCGACACCGAATCGAACGGAGGATCGTCTTCGTCCGCGGCAAATAATGTCGACCAGGAGGACAACAAAGTAGACAAGGAGGACGAGATGGAAGACTGCGACTCCAAGGAAACGCGGCTGACTTTGATGGAAGAGGTGCTGCTGTTGGGGCTAAAGGATAAGGAGGGCTACACATCATTCTGGAACGATTGCATATCGAGCGGGTTGCGAGGATGTATCCTGATTGAGCTGGGCCTTCGCGGGCGTATCGAACTGGAGCGGGCCGGTATGCGAAGGAAGGGTTTGTGCACGCGAAAAATCATTCTCAAATCCGACACACCGACCGGTGATGTACTGCTCGACGAGGCCTTGAAACATATTAAAGAAACGTGCCCACCGGAGACCATTCAGAGCTGGATCGAATATTTGAGCGGGGAAACATGGAATCCGTTAAAGATACGCTATCAGCTGAAAAATGTGCGCGAGCGGCTAGCCAAGAATTTAGTCGAAAAGGGTGTACTAACGACGGAGAAACAAAATTTTCTCCTATTCGATATGACGACACATCCACTAACTGATAACGTTATCAAGTGCCGGTTG]
consensusID : consensus_3945#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[ACCGTGTGAGGTGTCTGTCGGCAATCCCCCCGCACGGAGGCTGACAACTCTTCGCCACCGCAAAACAATCATATACCCACGAGGACGGCGGCCTAAAACGGCATCGGCTGAGCGATGAATCGAACTGACGGGCTTGTGCGACGTGTAAAAGCACGCGACACCGAATCGAACGGAGGATCGTCTTCGTCCGCGGCAAATAATGTCGACCAGGAGGACAACAAAGTAGACAAGGAGGACGAGATGGAAGACTGCGACTCCAAGGAAACGCGGCTGACTTTGATGGAAGAGGTGCTGCTGTTNGGGCTAAAGGATAAGGAGGGCTACACATCATTCTGGAACGATTGCATATCGAGCGGGTTGCGAGGATGTATCCTGATTGAGCTGGGCCTTCGCGGGCGTATCGAACTGGAGCGAGCCGGTATGCGAAGGAAGGGTTTGTGCACGCGAAAAATCATTCTCAAATCCGACACACCGACCGGTGATGTACTGCTCGACGAGGCCTTGAAACATATTAAAGAAACGTGCCCACCGGAGACCATTCAGAGCTGGATCGAATATTTGAGCGGGGAAACATGGAATCCGTTAAAGATACGCTATCAGCTGAAAAATGTGCGCGAGCGGCTAGCCAAGAATTTAGTCGAAAAGGGTGTACTA]
[+] EMBL BX627154 [ACCGTGTGAGGTGTCTGTCGGCAATCCCCCCGCACGGAGGCTGACAACTCTTCGCCACCGCAAAACAATCATATACCCACGAGGACGGCGGCCTAAAACGGCATCGGCTGAGCGATGAATCGAACTGACGGGCTTGTGCGACGTGTAAAAGCACGCGACACCGAATCGAACGGAGGATCGTCTTCGTCCGCGGCAAATAATGTCGACCAGGAGGACAACAAAGTAGACAAGGAGGACGAGATGGAAGACTGCGACTCCAAGGAAACGCGGCTGACTTTGATGGAAGAGGTGCTGCTGTTNGGGCTAAAGGATAAGGAGGGCTACACATCATTCTGGAACGATTGCATATCGAGCGGGTTGCGAGGATGTATCCTGATTGAGCTGGGCCTTCGCGGGCGTATCGAACTGGAGCGAGCCGGTATGCGAAGGAAGGGTTTGTGCACGCGAAAAATCATTCTCAAATCCGACACACCGACCGGTGATGTACTGCTCGACGAGGCCTTGAAACATATTAAAGAAACGTGCCCACCGGAGACCATTCAGAGCTGGATCGAATATTTGAGCGGGGAAACATGGAATCCGTTAAAGATACGCTATCAGCTGAAAAATGTGCGCGAGCGGCTAGCCAAGAATTTAGTCGAAAAGGGTGTACTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3945#1 ------------------------------------------------------------
consensus_3945#2 ACCGTGTGAGGTGTCTGTCGGCAATCCCCCCGCACGGAGGCTGACAACTCTTCGCCACCG 60
consensus_3945#0 ------------------------------------------------------------
consensus_3945#1 ----CCGCCCACGCGTCCGCGAGGACGGCGGCCTAAAACGGCATCGGCTGAACGATGAAT 56
consensus_3945#2 CAAAACAATCATATACCCACGAGGACGGCGGCCTAAAACGGCATCGGCTGAGCGATGAAT 120
consensus_3945#0 ------------------------------------------------------------
consensus_3945#1 CGAACTGACGGGCTTGTGCGACGTGTAAAAGCACGCGACACCGAATCGAACGGAG-GATC 115
consensus_3945#2 CGAACTGACGGGCTTGTGCGACGTGTAAAAGCACGCGACACCGAATCGAACGGAG-GATC 179
consensus_3945#0 --------------------------CTCTATGCAGAATCCNCGGTTATACGGAGTGATC 34
* * * * ****** ****
consensus_3945#1 GTCTTCGTCCGCGGCAAATAATGTCGACCAGGAGGACAACAAAGTAGACAAGGAGGACGA 175
consensus_3945#2 GTCTTCGTCCGCGGCAAATAATGTCGACCAGGAGGACAACAAAGTAGACAAGGAGGACGA 239
consensus_3945#0 GTCTTCGTCCGCGGCAA-TAATGTT-ACCAGGAGGACAACAAAGTAGACAAGAGTGACGA 92
***************** ****** ************************** *****
consensus_3945#1 GATGGAAGACTGCGACTCCAAGGAAACGCGGCTGACTTTGATGGAAGAGGTGCTGCTGTT 235
consensus_3945#2 GATGGAAGACTGCGACTCCAAGGAAACGCGGCTGACTTTGATGGAAGAGGTGCTGCTGTT 299
consensus_3945#0 GATGGAAGACTGCGACTCCAAG-AAACGCGGCTGACTTTGATGGAAGAGGTGCTACTGTT 151
********************** ******************************* *****
consensus_3945#1 GGGGCTAAAGGATAAGGAGGGCTACACATCATTCTGGAACGATTGCATATCGAGCGGGTT 295
consensus_3945#2 NGGGCTAAAGGATAAGGAGGGCTACACATCATTCTGGAACGATTGCATATCGAGCGGGTT 359
consensus_3945#0 GGG-CTAAGGATAAGTGAGGGCTACACATCATTCTGGAACGATTTGCTATCGAGCGGGTT 210
** **** * * **************************** *************
consensus_3945#1 G--CGAGGAT-GTATCC--TGATTGAGCTGGGCCTTCGCGGGCGTAT-CGAACTGGA-GC 348
consensus_3945#2 G--CGAGGAT-GTATCC--TGATTGAGCTGGGCCTTCGCGGGCGTAT-CGAACTGGA-GC 412
consensus_3945#0 TGCCGAGGATTGTATTCCTTGAATTGACTGGCCTTCCG---GCGTATTCAAACTGGGCGG 267
******* **** * *** * **** * * ** ****** * ****** *
consensus_3945#1 GGGCCGGT--------ATGCGAAGGAAGGGTTTGTGC----ACGCGAAAAATCATTCTCA 396
consensus_3945#2 GAGCCGGT--------ATGCGAAGGAAGGGTTTGTGC----ACGCGAAAAATCATTCTCA 460
consensus_3945#0 AGGCCGGCTATTGCGAANGGGAAAGGGGGTATTGTGCCACAGCCGAAAAAACAATCCTCA 327
***** * * *** * ** ****** * ***** ** ****
consensus_3945#1 AATCC--GACACACCG-ACCGGTGATGTACTGCTCGACGAGGCCTTGAAACATATTAAAG 453
consensus_3945#2 AATCC--GACACACCG-ACCGGTGATGTACTGCTCGACGAGGCCTTGAAACATATTAAAG 517
consensus_3945#0 AATTCCGAAAACACCGGAACCGGGTTGCATTGTTCACT--TGCATCCGAACATG--AAGA 383
*** * * ****** * * * * ** * ** ** ** * ***** **
consensus_3945#1 AAACGTGCCCACCGGAGACCATTCAGAGCTGGATCGAATATTTGAGCGGGGAAACATGGA 513
consensus_3945#2 AAACGTGCCCACCGGAGACCATTCAGAGCTGGATCGAATATTTGAGCGGGGAAACATGGA 577
consensus_3945#0 GGTCCTTGACACGAGCAATTATTTANACCGGAAACANCGTTGCCCCCAACCCNGGAAAGA 443
* * *** * * *** * * * * * * * * * **
consensus_3945#1 ATCCGTTA--AAGATACGCTATCAGCTGAAAAATGTGCGCGAGCGGCTAGCCAAGAATTT 571
consensus_3945#2 ATCCGTTA--AAGATACGCTATCAGCTGAAAAATGTGCGCGAGCGGCTAGCCAAGAATTT 635
consensus_3945#0 ANCCAATNTCAAAAGGCCTTGGGAATTCGNAAATACTTATGGAACGCACGNGGGGAAAAC 503
* ** * ** * * * * * **** * ** * ***
consensus_3945#1 AGTCGAAAAGGGTGTACTAA-CGACGGAGAAACAAAATTTTCTCCTATTCGATATGACGA 630
consensus_3945#2 AGTCGAAAAGGGTGTACTA----------------------------------------- 654
consensus_3945#0 ATTGNGAACAGTTCCCCGGNTCAACGACATTACGGCGNTCATTCGCAGGTAGGAACACAT 563
* * ** * * *
consensus_3945#1 CACATCCACTAACTGATAACGTTATCAAGTGCCGGTTG---------------------- 668
consensus_3945#2 ------------------------------------------------------------
consensus_3945#0 CANTTGTTGCAGCCGGAAGACGGACGTAAGACCCACAGGACACTANTAAGGTTCCGAAAA 623
consensus_3945#1 ------------------------------------------------------------
consensus_3945#2 ------------------------------------------------------------
consensus_3945#0 AACAGGAGNTTGGTAACCTTAAAGACGGAACNGGGAANGAAAAAGCAAAACAANAGTATA 683
consensus_3945#1 -------------------------------------------------------
consensus_3945#2 -------------------------------------------------------
consensus_3945#0 TATACTACGCTTAATATCCGGATTAACTTGGACNGGAGCGATCAACAATTCCAAC 738
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||