These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3946#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence [CAGAATCNCCCCGAGGTCATTCTGAGTAGGAACGGGGGGATGGTCTCCGAAAAGACTGATTTAACCACACGCACACACGGCTGCGGTGGTGTAGAGGTTTCTCGCGCACGGTTTCACGAACAACGCGTTCAAGCGCAAACAACGCACATACACACACGCGCGCGCGCGCAGGAAAACAACATGCTGCAGCATCTCCGGCACTTTTGCTGCTGGAAAGCAGCAACATTTTTGAATCTCTTGGCTGCGCACCGCGCAACCCGCTAGGAGCGAGCGACTCAAACAAAACAAAACAAAATATTCAATTTGGTATTTGCGCCGAGGAGAAGGGAGGAGACGCGCGCGTACCTGTGATATGCTTACCGGGCCCCTCTTGCGCCTCCACACGTATAGCTATACATATATGTACGTCTATGTATGTCGGTTTCCCGTCCACTTAGCAGCTAGTGCGCGCGTTTGTTTGAAGCTTATCGAAAACGAAAAAAAAAAGAAAACAGGAAAACCAAACACTCCTCCATATGATATAGGCCACAGAACACACACACACACACACACACTCGTTGTTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTNNTGTGTGTATAATTAACCCATTTTAGTTTAAGTTTTTTCAGTCTTTTGTGTCGTATNAGTTTGGCTAGAAAAAGCATATGCATGAATTTTTGCATTGNGACGAAGACGAAAAACACAGTCAGTGGTTCAGCACTAGGTTCCTTTTCAGCTCGT] [+] EMBL AL931987 [CAGAATCNCCCCGAGGTCATTCTGAGTAGGAACGGGGGGATGGTCTCCGAAAAGACTGATTTAACCACACGCACACACGGCTGCGGTGGTGTAGAGGTTTCTCGCGCACGGTTTCACGAACAACGCGTTCAAGCGCAAACAACGCACATACACACACGCGCGCGCGCGCAGGAAAACAACATGCTGCAGCATCTCCGGCACTTTTGCTGCTGGAAAGCAGCAACATTTTTGAATCTCTTGGCTGCGCACCGCGCAACCCGCTAGGAGCGAGCGACTCAAACAAAACAAAACAAAATATTCAATTTGGTATTTGCGCCGAGGAGAAGGGAGGAGACGCGCGCGTACCTGTGATATGCTTACCGGGCCCCTCTTGCGCCTCCACACGTATAGCTATACATATATGTACGTCTATGTATGTCGGTTTCCCGTCCACTTAGCAGCTAGTGCGCGCGTTTGTTTGAAGCTTATCGAAAACGAAAAAAAAAAGAAAACAGGAAAACCAAACACTCCTCCATATGATATAGGCCACAGAACACACACACACACACACACACTCGTTGTTTACACTTTTCTGTCACATTTTGCATTACTTTTCTTTTNNTGTGTGTATAATTAACCCATTTTAGTTTAAGTTTTTTCAGTCTTTTGTGTCGTATNAGTTTGGCTAGAAAAAGCATATGCATGAATTTTTGCATTGNGACGAAGACGAAAAACACAGTCAGTGGTTCAGCACTAGGTTCCTTTTCAGCTCGT] consensusID : consensus_3946#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence [CCGAGCGGGAGGAGGTGCAGAAGGAGCAGGAGGACGAGATGGTGGTGGAGGAGCAGGACGATGGGCCCGAGCGGCTGGTCAACATGTTTTCGCTCAAAGCCGCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGTGCGGGCCAGCACCATCACCCTTACCACCAGCACCACTTCCATCGGCACCACCGGCAGCAGGAAGAGACGATCACCACCAGCAGCAACAGCAGCAGCCCGCCGATTCTGATCGACGACGAGCCGTGCCGGGACTGGCTGACGGCTGGCGTAGGCTCAGCGCCGCCACTGCCCGTCGGGTACGCCGCCGGTGGCATCAAGCGCCGCCCGGACAGCCAGCGCCGTAGCTCGGCCAAGCGCAAGCTGGCGGAGCAGCACGGGCCGCCGGGCAGCAGCGCTGGCGGTGGTGACAGTCACCACCACCCCACCGATCGGAAGCGTCGCACCGCCAGCAGCGACTCGATGGAGTAGCCTTCCCAGCGCGCAGTGTAATATTAAGCAGTAGGGCGGCCTTAGCGTGCTGAAATGCTGCGCCGAACAAGGGGGAAAACACGAGCTAGATTTAACAGCAACAATTGTTAAGAAAAATGGGAGGGGGAAACAAAGGGAAAACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGGCAGCGCAGCGACAACAGAGCA] [+] EMBL BM630569 [CCGAGCGGGAGGAGGTGCAGAAGGAGCAGGAGGACGAGATGGTGGTGGAGGAGCAGGACGATGGGCCCGAGCGGCTGGTCAACATGTTTTCGCTCAAAGCCGCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGTGCGGGCCAGCACCATCACCCTTACCACCAGCACCACTTCCATCGGCACCACCGGCAGCAGGAAGAGACGATCACCACCAGCAGCAACAGCAGCAGCCCGCCGATTCTGATCGACGACGAGCCGTGCCGGGACTGGCTGACGGCTGGCGTAGGCTCAGCGCCGCCACTGCCCGTCGGGTACGCCGCCGGTGGCATCAAGCGCCGCCCGGACAGCCAGCGCCGTAGCTCGGCCAAGCGCAAGCTGGCGGAGCAGCACGGGCCGCCGGGCAGCAGCGCTGGCGGTGGTGACAGTCACCACCACCCCACCGATCGGAAGCGTCGCACCGCCAGCAGCGACTCGATGGAGTAGCCTTCCCAGCGCGCAGTGTAATATTAAGCAGTAGGGCGGCCTTAGCGTGCTGAAATGCTGCGCCGAACAAGGGGGAAAACACGAGCTAGATTTAACAGCAACAATTGTTAAGAAAAATGGGAGGGGGAAACAAAGGGAAAACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGGCAGCGCAGCGACAACAGAGCA] consensusID : consensus_3946#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [CCCCAGGTTTGTTAAGAAAAATGGGAGGGGCGCAAACAAGNGAANACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGTGCAGCGCAGCAACAACAGAGCACACACACAGAGAGAGCGTGCGTGATTTGCTCGGTTTTACAGGTGTTGTAGAGGAAGCTAAGCTGGGAAGGAAATCCATCCACGCGGGGCAGCATACTGCTTTGGGGTGTGGTGGTGTTGTATATTAGTTTGTNTATTGCTGCTGCCCCATAGGGTATTTTGTAAAGAGGCATTAACCGAGAATGACTGCCATTTAGTGATTTTCTTTAAACGTTCTTCATATTGTTAATCTAATCCCTTCTTTGGCGGGGAGANTGAACAGGTCCAACAAAGAGGCAGGCAGCAGCAAGGCAGCACCAATTTCGCTAGCCAAACAAGAAAGGAGGAGGAAGAGTAGGCAACTGGGGGGCATGGTCTCCGAAAAGACTGATTTAACCACACGCACACACGGCTGCGGTGGTAGTAGAGGTANACTCGCGCACGGTTTCACGAACAACGCGTTCAAGCGCAAA] [+] EMBL AL696454 [CCCCAGGTTTGTTAAGAAAAATGGGAGGGGCGCAAACAAGNGAANACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGTGCAGCGCAGCAACAACAGAGCACACACACAGAGAGAGCGTGCGTGATTTGCTCGGTTTTACAGGTGTTGTAGAGGAAGCTAAGCTGGGAAGGAAATCCATCCACGCGGGGCAGCATACTGCTTTGGGGTGTGGTGGTGTTGTATATTAGTTTGTNTATTGCTGCTGCCCCATAGGGTATTTTGTAAAGAGGCATTAACCGAGAATGACTGCCATTTAGTGATTTTCTTTAAACGTTCTTCATATTGTTAATCTAATCCCTTCTTTGGCGGGGAGANTGAACAGGTCCAACAAAGAGGCAGGCAGCAGCAAGGCAGCACCAATTTCGCTAGCCAAACAAGAAAGGAGGAGGAAGAGTAGGCAACTGGGGGGCATGGTCTCCGAAAAGACTGATTTAACCACACGCACACACGGCTGCGGTGGTAGTAGAGGTANACTCGCGCACGGTTTCACGAACAACGCGTTCAAGCGCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3946#0 CAGAATCNCCCCGAGGTCATTCTGAGTAGGAACGGGGGGATGGTCTCCGAAAAGACTGAT 60 consensus_3946#2 ------------------------------------CCCCAGGTTTGTTAAGAAA---AA 21 consensus_3946#1 ----------------------CCGAGCGGGAGGAGGTGCAGAAGGAGCAGGAGGACGAG 38 * * * * consensus_3946#0 TTAACCACACGCACACACGGCTGCGGTGGTGTAGAGGTTTCTCGCGCACGGTTTCACGAA 120 consensus_3946#2 TGGGAGGGGCGCAAACA-AGNGAANACTTTTTAAAAGTACCGCACTAATCGATTTGCAAG 80 consensus_3946#1 ATGGTGGTGGAGGAGCAGGACGATGGGCCCGAGCGGCTGGTCAACATGTTTTCGCTCAAA 98 ** * * * * consensus_3946#0 CAACGCGTTCAAGCGCAAACAA-CGCACATACA-CACAC-GCGCGCGCGCGCAGGAAAAC 177 consensus_3946#2 TG-TGCAGCGCAGCAACAACAG-AGCACACACA-CAGA--GAGAGCGTGCGT-GATTTGC 134 consensus_3946#1 -GCCGCAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAAAGTGCGGGCCAGCACCATCACCC 157 ** *** * ** *** ** ** * * * ** ** * consensus_3946#0 AACATGCTG-CAGCATCTCCGGCACTTTTGCTGCTGGAAAGCAGCAACATTTTTGAATCT 236 consensus_3946#2 TCGGTTTTA-CAGGTGTTGTAGAGGAAGCTAAGCTGGGAAGGAAATCCATCCACG----- 188 consensus_3946#1 TTACCACCAGCACCACTTCCATCGGCACCACCGGCAGCAGGAAGAGACGATCACC----- 212 ** * * * * * * * consensus_3946#0 CTTGGCTGCGCACCGCGCAACCCGCTAGGAGCGAGCGACTCAAACAAAAC-AAAACAAAA 295 consensus_3946#2 CGGGGCAGCATACTGCTTTGGGGTGTGGTGGTGTTGTATATTAGTTTGTN-TATTGCTGC 247 consensus_3946#1 ACCAGCAGCA-ACAGC--AGCAGCCCGCCGATTCTGATCGACGACGAGCCGTGCCGGGAC 269 ** ** ** ** consensus_3946#0 TATTCAATTTGGTATTT-GCGCCGAGGAGAAGGGAGGAGACGCGCGCGTACCTGTGATAT 354 consensus_3946#2 TGCCCCATAGGGTATTTTGTAAAGAGGCATTAACCGAGAATGACTGCCATTTAGTGATTT 307 consensus_3946#1 TGGCTGACGGCTGGCGT--AGGCTCAGCGCCGCCACTGCCCGTCGGGTACGCCGCCGGTG 327 * * * * * * * consensus_3946#0 GCTTACCGGGCCCCTCTTGCGCCTCCACACGTATAGCTATACATATATGTACGTCTATGT 414 consensus_3946#2 TCTTTAAACGTTCTTCATA---TTGTTAATCTAATCCCTTCTTTGGCGGGGAGANTGAAC 364 consensus_3946#1 GCATCAAGCGCCGCCCGGACAGCCAGCGCCGTAGCTCGGCCAAGCGCAAGCTGGCGGAGC 387 * * * * ** * * consensus_3946#0 ATGTCGGTTTCCCGTCCAC--TTAGCAGCTAGTGCGCGCGTTTGTTTGAAGCTTATCGAA 472 consensus_3946#2 AGGTCCAACAAAGAGGCAG--GCAGCAGCAAG-GCA-GCACCAATTT--CGCTAGCCAAA 418 consensus_3946#1 AGCACGGGCCGCCGGGCAGCAGCGCTGGCGGTGGTG-ACAGTCACCACCACCCCACCGAT 446 * * ** ** * * * * * consensus_3946#0 AACGAAAAAAAAAAGAAAACAGGAAAACCAAACACTCCTCCATATGATATAGGCCACAGA 532 consensus_3946#2 CAAGAAAGGAGGAGGAAGAGTAGGCAACTGGGGGGCATGGTCTCCGAAAAGACTGATTTA 478 consensus_3946#1 CGGAAGCGTCGCACCGCCAGCAG-CGACTCGATGGAGTAGCCTTCCCAGCGCGCAGTGTA 505 * * * * ** * * consensus_3946#0 AC-ACACACAC--ACACACACACACTCGTTGTTTACACTTTTCTGT-CACATTTTG---C 585 consensus_3946#2 ACCACACGCAC--ACACGGCTGCGGTGGTAGTAGAGGTANACTCGCGCACGGTTT----C 532 consensus_3946#1 ATATTAAGCAGTAGGGCGGCCTTAGCGTGCTGAAATGCTGCGCCGAACAAGGGGGAAAAC 565 * * ** * * * ** * consensus_3946#0 ATTACTTTTCTTTTNNTGTGTGTATAATTAACCCATTTTAGTTTAAGTTTTTTCAGTCTT 645 consensus_3946#2 ACGAACAACGCGTTCAAGCGCAAA------------------------------------ 556 consensus_3946#1 ACGAGCTAGATTTAACAGCAACAATTGTTAAGAAAAATGGGAGGGGGAAACAAAGGGAAA 625 * * * * * consensus_3946#0 TTGTGTCGTATNAGTTTGGCTAGAAAAAGCATATGCATGAATTTTTGCATTGNGACGAAG 705 consensus_3946#2 ------------------------------------------------------------ consensus_3946#1 ACTTTTTAAAAGTACCGCACTAATCGATTTGCAAGTGGCAGCGCAGCGACAACAGAGCA- 684 consensus_3946#0 ACGAAAAACACAGTCAGTGGTTCAGCACTAGGTTCCTTTTCAGCTCGT 753 consensus_3946#2 ------------------------------------------------ consensus_3946#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||